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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181401 8g7s:8 (3.1) BS02 ZN ? GO:0003735 ... A0A0E2L017 38538914
    181402 8g7t:A (3.2) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    181403 8g7t:C (3.2) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    181404 8g7u:C (4.0) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    181405 8g7v:C (3.9) BS03 ZN 3.6.4.13 GO:0002230 ... O95786 37951994
    181406 8g8h:A (1.64) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    181407 8g8j:A (1.74) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    181408 8g8p:AAA (1.83) BS04 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 38346985
    181409 8g8p:AAA (1.83) BS05 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 38346985
    181410 8g8p:AAA (1.83) BS06 MN 6.3.2.31
    6.3.2.34
    GO:0005525 ... O28028 38346985
    181411 8g8z:J (4.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    181412 8g99:A (2.8) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    181413 8g99:A (2.8) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    181414 8g9c:A (1.4) BS02 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0000287 ... O95989 37773020
    181415 8g9c:A (1.4) BS03 MG 3.6.1.10
    3.6.1.52
    3.6.1.59
    3.6.1.61
    3.6.1.62
    GO:0000287 ... O95989 37773020
    181416 8g9e:A (1.75) BS03 MG 2.7.4.24 GO:0000829 ... O43314 37773020
    181417 8g9e:A (1.75) BS04 MG 2.7.4.24 GO:0000829 ... O43314 37773020
    181418 8g9e:A (1.75) BS05 MG 2.7.4.24 GO:0000829 ... O43314 37773020
    181419 8g9f:A (3.2) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    181420 8g9f:A (3.2) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    181421 8g9f:D (3.2) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    181422 8g9l:A (3.3) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    181423 8g9n:A (3.5) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    181424 8g9o:A (4.4) BS04 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    181425 8g9p:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 37590355
    181426 8g9p:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 37590355
    181427 8g9q:A (1.4) BS02 MG 3.6.5.2 GO:0003924 ... P01116 37590355
    181428 8g9u:P (3.0) BS02 MG 3.1.-.- GO:0003676 ... D0W8X3 38242128
    181429 8g9u:P (3.0) BS03 MG 3.1.-.- GO:0003676 ... D0W8X3 38242128
    181430 8ga8:B (3.5) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37244892
    181431 8ga8:E (3.5) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 37244892
    181432 8gae:E (3.3) BS01 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    181433 8gae:E (3.3) BS02 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    181434 8gao:F (4.1) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    181435 8gao:G (4.1) BS03 ZN 2.7.7.- GO:0003896 ... P04520 37474605
    181436 8gap:D (3.8) BS02 ZN ? GO:0000781 ... D2CVN6 37330293
    181437 8gb1:A (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181438 8gb1:B (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181439 8gb1:C (2.46) BS02 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181440 8gb1:D (2.46) BS03 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181441 8gb2:A (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181442 8gb2:B (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181443 8gb2:C (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181444 8gb2:D (3.07) BS01 FE 3.1.5.- N/A Q9Y3Z3 37233733
    181445 8gb4:A (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    181446 8gb4:B (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    181447 8gb4:C (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    181448 8gb4:D (2.59) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    181449 8gbf:A (2.11) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    181450 8gbl:A (2.24) BS01 ZN 2.3.1.- N/A Q9NXA8 38846003
    181451 8gbl:B (2.24) BS01 ZN 2.3.1.- N/A Q9NXA8 38846003
    181452 8gbn:A (2.7) BS01 ZN 2.3.1.- N/A Q9NXA8 38846003
    181453 8gbn:B (2.7) BS01 ZN 2.3.1.- N/A Q9NXA8 38846003
    181454 8gbq:B (1.74) BS01 ZN 2.3.2.27 N/A Q96EQ8 37541247
    181455 8gbq:B (1.74) BS02 ZN 2.3.2.27 N/A Q96EQ8 37541247
    181456 8gbq:B (1.74) BS03 ZN 2.3.2.27 N/A Q96EQ8 37541247
    181457 8gbt:A (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37695261
    181458 8gbt:A (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37695261
    181459 8gbt:F (2.8) BS01 ZN ? GO:0005740 ... P00428 37695261
    181460 8gbt:N (2.8) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37695261
    181461 8gbt:N (2.8) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37695261
    181462 8gbt:O (2.8) BS02 MG 7.1.1.9 GO:0004129 ... P68530 37695261
    181463 8gbt:S (2.8) BS01 ZN ? GO:0005740 ... P00428 37695261
    181464 8gcb:B (2.39) BS01 ZN 2.3.2.27 N/A Q96EQ8 37541247
    181465 8gcb:B (2.39) BS02 ZN 2.3.2.27 N/A Q96EQ8 37541247
    181466 8gcb:B (2.39) BS03 ZN 2.3.2.27 N/A Q96EQ8 37541247
    181467 8gcd:A (2.97) BS01 CA ? GO:0007155 ... P08514 38579706
    181468 8gcd:A (2.97) BS02 CA ? GO:0007155 ... P08514 38579706
    181469 8gcd:A (2.97) BS03 CA ? GO:0007155 ... P08514 38579706
    181470 8gcd:A (2.97) BS04 CA ? GO:0007155 ... P08514 38579706
    181471 8gcd:A (2.97) BS05 CA ? GO:0007155 ... P08514 38579706
    181472 8gcd:B (2.97) BS01 MG ? N/A P05106 38579706
    181473 8gcd:B (2.97) BS02 CA ? N/A P05106 38579706
    181474 8gcd:B (2.97) BS03 CA ? N/A P05106 38579706
    181475 8gce:A (3.12) BS01 CA ? GO:0007155 ... P08514 38579706
    181476 8gce:A (3.12) BS02 CA ? GO:0007155 ... P08514 38579706
    181477 8gce:A (3.12) BS03 CA ? GO:0007155 ... P08514 38579706
    181478 8gce:A (3.12) BS04 CA ? GO:0007155 ... P08514 38579706
    181479 8gce:B (3.12) BS01 MG ? N/A P05106 38579706
    181480 8gce:B (3.12) BS02 CA ? N/A P05106 38579706
    181481 8gce:B (3.12) BS03 CA ? N/A P05106 38579706
    181482 8gcq:A (2.38) BS01 CU 7.1.1.9 GO:0004129 ... P00396 37717031
    181483 8gcq:A (2.38) BS02 MG 7.1.1.9 GO:0004129 ... P00396 37717031
    181484 8gcq:F (2.38) BS01 ZN ? GO:0005740 ... P00428 37717031
    181485 8gcq:N (2.38) BS01 CU 7.1.1.9 GO:0004129 ... P00396 37717031
    181486 8gcq:N (2.38) BS02 MG 7.1.1.9 GO:0004129 ... P00396 37717031
    181487 8gcq:S (2.38) BS01 ZN ? GO:0005740 ... P00428 37717031
    181488 8gcr:A (3.38) BS01 ZN ? GO:0003677 ... P03126
    P0AEX9
    38418456
    181489 8gcr:A (3.38) BS02 ZN ? GO:0003677 ... P03126
    P0AEX9
    38418456
    181490 8gcr:B (3.38) BS01 ZN ? GO:0000976 ... P04637 38418456
    181491 8gcy:A (1.81) BS01 ZN 2.3.2.27 GO:0001784 ... Q13191 38104184
    181492 8gcy:A (1.81) BS02 ZN 2.3.2.27 GO:0001784 ... Q13191 38104184
    181493 8gd4:A (2.0) BS02 ZN ? N/A F8W4B7 37782298
    181494 8gd4:B (2.0) BS02 ZN ? N/A F8W4B7 37782298
    181495 8gd7:A (3.24) BS03 MG N/A N/A O75417 38580648
    181496 8gdw:AAA (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    181497 8gdw:BBB (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    181498 8gdw:CCC (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    181499 8gdw:DDD (2.35) BS01 ZN ? GO:0046872 ... P73129 38609367
    181500 8gdx:A (2.74) BS01 ZN ? N/A Q6IE81 38448574
    181501 8gdx:A (2.74) BS02 ZN ? N/A Q6IE81 38448574
    181502 8gdx:A (2.74) BS03 ZN ? N/A Q6IE81 38448574
    181503 8gdx:A (2.74) BS04 ZN ? N/A Q6IE81 38448574
    181504 8gdx:A (2.74) BS05 ZN ? N/A Q6IE81 38448574
    181505 8ge0:A (2.4) BS01 ZN ? N/A P68431
    Q6IE81
    38448574
    181506 8ge0:A (2.4) BS02 ZN ? N/A P68431
    Q6IE81
    38448574
    181507 8ge0:A (2.4) BS03 ZN ? N/A P68431
    Q6IE81
    38448574
    181508 8ge0:A (2.4) BS04 ZN ? N/A P68431
    Q6IE81
    38448574
    181509 8ge0:A (2.4) BS05 ZN ? N/A P68431
    Q6IE81
    38448574
    181510 8ge0:B (2.4) BS01 ZN ? N/A P68431
    Q6IE81
    38448574
    181511 8ge0:B (2.4) BS02 ZN ? N/A P68431
    Q6IE81
    38448574
    181512 8ge0:B (2.4) BS03 ZN ? N/A P68431
    Q6IE81
    38448574
    181513 8ge0:B (2.4) BS04 ZN ? N/A P68431
    Q6IE81
    38448574
    181514 8ge0:B (2.4) BS05 ZN ? N/A P68431
    Q6IE81
    38448574
    181515 8ge0:C (2.4) BS01 ZN ? N/A P68431
    Q6IE81
    38448574
    181516 8ge0:C (2.4) BS02 ZN ? N/A P68431
    Q6IE81
    38448574
    181517 8ge0:C (2.4) BS03 ZN ? N/A P68431
    Q6IE81
    38448574
    181518 8ge0:C (2.4) BS04 ZN ? N/A P68431
    Q6IE81
    38448574
    181519 8ge0:C (2.4) BS05 ZN ? N/A P68431
    Q6IE81
    38448574
    181520 8gf4:A (3.0) BS01 ZN ? GO:0046872 ... P73129 38609367
    181521 8gf4:A (3.0) BS02 ZN ? GO:0046872 ... P73129 38609367
    181522 8gf4:B (3.0) BS01 ZN ? GO:0046872 ... P73129 38609367
    181523 8gf4:B (3.0) BS02 ZN ? GO:0046872 ... P73129 38609367
    181524 8gf4:C (3.0) BS01 ZN ? GO:0046872 ... P73129 38609367
    181525 8gf4:C (3.0) BS03 ZN ? GO:0046872 ... P73129 38609367
    181526 8gf4:D (3.0) BS01 ZN ? GO:0046872 ... P73129 38609367
    181527 8gf4:D (3.0) BS03 ZN ? GO:0046872 ... P73129 38609367
    181528 8gft:E (3.8) BS01 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    181529 8gft:E (3.8) BS02 MN 3.1.3.16 GO:0000165 ... P53041 37069154
    181530 8gh6:A (3.08) BS05 ZN ? GO:0003964 ... V9H052 37023171
    181531 8gh6:A (3.08) BS06 ZN ? GO:0003964 ... V9H052 37023171
    181532 8gh6:A (3.08) BS07 MG ? GO:0003964 ... V9H052 37023171
    181533 8gh7:A (1.75) BS03 ZN 2.3.2.27 N/A P98170 37262387
    181534 8gh7:B (1.75) BS02 ZN 2.3.2.27 N/A P98170 37262387
    181535 8gh7:B (1.75) BS03 ZN 2.3.2.27 N/A P98170 37262387
    181536 8ghb:A (2.76) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181537 8ghc:A (2.3) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181538 8ghc:B (2.3) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181539 8ghd:A (2.2) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181540 8ghd:B (2.2) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181541 8ghd:C (2.2) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181542 8ghd:D (2.2) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181543 8ghd:E (2.2) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181544 8ghd:F (2.2) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181545 8ghe:A (2.05) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181546 8ghe:B (2.05) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181547 8ghe:C (2.05) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181548 8ghe:D (2.05) BS01 FE2 1.13.11.-
    1.13.11.31
    1.13.11.33
    3.3.2.-
    GO:0001676 ... P18054 37506345
    181549 8ghf:A (2.7) BS01 CA ? GO:0005216 ... Q12791 37098056
    181550 8ghf:A (2.7) BS02 CA ? GO:0005216 ... Q12791 37098056
    181551 8ghf:B (2.7) BS01 CA ? GO:0005216 ... Q12791 37098056
    181552 8ghf:B (2.7) BS02 CA ? GO:0005216 ... Q12791 37098056
    181553 8ghf:C (2.7) BS01 CA ? GO:0005216 ... Q12791 37098056
    181554 8ghf:C (2.7) BS02 CA ? GO:0005216 ... Q12791 37098056
    181555 8ghf:D (2.7) BS01 CA ? GO:0005216 ... Q12791 37098056
    181556 8ghf:D (2.7) BS02 CA ? GO:0005216 ... Q12791 37098056
    181557 8ghr:A (3.2) BS01 ZN ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    181558 8ghr:A (3.2) BS02 ZN ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    181559 8ghr:A (3.2) BS04 CA ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    181560 8ghr:B (3.2) BS01 ZN ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    181561 8ghr:B (3.2) BS02 ZN ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    181562 8ghr:B (3.2) BS04 CA ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    181563 8gi3:A (1.52) BS02 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    181564 8gi6:A (1.4) BS02 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    181565 8gim:A (2.63) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181566 8gim:A (2.63) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    181567 8gim:A (2.63) BS08 MG 2.7.7.86 N/A Q8C6L5 38740774
    181568 8gim:C (2.63) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181569 8gim:C (2.63) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    181570 8gim:C (2.63) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    181571 8gin:A (2.75) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181572 8gin:A (2.75) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181573 8gin:A (2.75) BS08 MG 2.7.7.86 N/A Q8C6L5 38740774
    181574 8gin:C (2.75) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181575 8gin:C (2.75) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    181576 8gin:C (2.75) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    181577 8gio:A (2.67) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181578 8gio:A (2.67) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181579 8gio:A (2.67) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    181580 8gio:C (2.67) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181581 8gio:C (2.67) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181582 8gio:C (2.67) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    181583 8gip:A (2.7) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    181584 8gip:A (2.7) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181585 8gip:A (2.7) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    181586 8gip:C (2.7) BS05 MG 2.7.7.86 N/A Q8C6L5 38740774
    181587 8gip:C (2.7) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181588 8gip:C (2.7) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181589 8gir:A (2.5) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181590 8gir:A (2.5) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181591 8gir:A (2.5) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    181592 8gir:C (2.5) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181593 8gir:C (2.5) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181594 8gir:C (2.5) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    181595 8gis:A (2.46) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181596 8gis:A (2.46) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    181597 8gis:A (2.46) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    181598 8gis:C (2.46) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    181599 8gis:C (2.46) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    181600 8gis:C (2.46) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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