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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181201 8g3o:H (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181202 8g3o:J (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181203 8g3p:A (2.5) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181204 8g3p:B (2.5) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181205 8g3p:D (2.5) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181206 8g3p:E (2.5) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181207 8g3q:E (2.3) BS03 CA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    181208 8g3q:F (2.3) BS03 CA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    181209 8g3q:G (2.3) BS03 CA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    181210 8g3q:H (2.3) BS03 CA 3.2.1.18 GO:0004308 ... V9SU56 37258672
    181211 8g3r:E (2.3) BS04 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181212 8g3r:F (2.3) BS02 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181213 8g3r:G (2.3) BS02 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181214 8g3r:H (2.3) BS02 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181215 8g3v:G (2.2) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181216 8g3v:H (2.2) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181217 8g3v:I (2.2) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181218 8g3v:J (2.2) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181219 8g3z:A (2.3) BS01 CA 3.2.1.18 GO:0004308 ... R4KV67 37258672
    181220 8g3z:B (2.3) BS01 CA 3.2.1.18 GO:0004308 ... R4KV67 37258672
    181221 8g3z:C (2.3) BS01 CA 3.2.1.18 GO:0004308 ... R4KV67 37258672
    181222 8g3z:D (2.3) BS01 CA 3.2.1.18 GO:0004308 ... R4KV67 37258672
    181223 8g40:G (2.8) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181224 8g40:H (2.8) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181225 8g40:I (2.8) BS02 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181226 8g40:J (2.8) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181227 8g41:A (1.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181228 8g41:A (1.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181229 8g41:B (1.5) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181230 8g41:B (1.5) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181231 8g43:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181232 8g43:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181233 8g43:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181234 8g44:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181235 8g44:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181236 8g44:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181237 8g45:A (1.62) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181238 8g45:A (1.62) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181239 8g45:A (1.62) BS03 ZN 3.5.1.-
    3.5.1.98
    GO:0008270 ... Q9UBN7 37499118
    181240 8g46:B (2.2) BS01 ZN ? GO:0005515 ... Q9NXF7 36824856
    181241 8g4s:a (3.14) BS02 ZN ? GO:0003729 ... A8BQZ7 38242118
    181242 8g4v:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181243 8g4v:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181244 8g4v:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181245 8g4v:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181246 8g4w:J (3.8) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    181247 8g4z:A (1.7) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    181248 8g4z:A (1.7) BS03 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    181249 8g50:A (1.7) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    181250 8g50:A (1.7) BS03 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    181251 8g50:B (1.7) BS02 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    181252 8g50:B (1.7) BS03 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    181253 8g5w:A (2.0) BS01 MN 3.1.3.11 GO:0005829 ... Q5NEJ8 37352301
    181254 8g5w:B (2.0) BS01 MN 3.1.3.11 GO:0005829 ... Q5NEJ8 37352301
    181255 8g5w:C (2.0) BS01 MN 3.1.3.11 GO:0005829 ... Q5NEJ8 37352301
    181256 8g5x:A (2.2) BS01 MN 3.1.3.11 GO:0005829 ... Q5NEJ8 37352301
    181257 8g5x:B (2.2) BS01 MN 3.1.3.11 GO:0005829 ... Q5NEJ8 37352301
    181258 8g5x:C (2.2) BS02 MN 3.1.3.11 GO:0005829 ... Q5NEJ8 37352301
    181259 8g5y:LA (2.29) BS03 MG N/A GO:0003723 ... N/A 37020024
    181260 8g5y:LC (2.29) BS03 MG ? GO:0002181 ... P36578 37020024
    181261 8g5y:LC (2.29) BS04 MG ? GO:0002181 ... P36578 37020024
    181262 8g5y:LI (2.29) BS03 MG ? GO:0000027 ... P27635 37020024
    181263 8g5y:LL (2.29) BS03 MG ? GO:0001824 ... P26373 37020024
    181264 8g5y:LL (2.29) BS04 MG ? GO:0001824 ... P26373 37020024
    181265 8g5y:LP (2.29) BS03 MG ? GO:0002181 ... P18621 37020024
    181266 8g5y:Le (2.29) BS02 MG ? GO:0002181 ... P62910 37020024
    181267 8g5y:Lg (2.29) BS02 ZN ? GO:0002181 ... P49207 37020024
    181268 8g5y:Lj (2.29) BS03 ZN ? GO:0002181 ... P61927 37020024
    181269 8g5y:Lm (2.29) BS02 ZN N/A GO:0003735 ... N/A 37020024
    181270 8g5y:Lo (2.29) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    181271 8g5y:Lp (2.29) BS02 ZN ? GO:0002181 ... P61513 37020024
    181272 8g5y:SN (2.29) BS03 MG ? GO:0002181 ... P62277 37020024
    181273 8g5y:Sa (2.29) BS02 ZN ? GO:0002181 ... P62854 37020024
    181274 8g5y:Sd (2.29) BS02 ZN ? GO:0002181 ... P62273 37020024
    181275 8g5y:Sd (2.29) BS03 MG ? GO:0002181 ... P62273 37020024
    181276 8g5y:Sf (2.29) BS02 ZN ? GO:0002181 ... P62979 37020024
    181277 8g5z:EF (2.64) BS07 MG 3.6.5.- GO:0000049 ... P68105 37020024
    181278 8g5z:EF (2.64) BS08 MG 3.6.5.- GO:0000049 ... P68105 37020024
    181279 8g5z:LA (2.64) BS03 MG N/A GO:0003735 ... N/A 37020024
    181280 8g5z:LH (2.64) BS02 MG ? GO:0002181 ... P32969 37020024
    181281 8g5z:LI (2.64) BS03 MG ? GO:0000027 ... P27635 37020024
    181282 8g5z:LN (2.64) BS03 MG ? GO:0002181 ... P61313 37020024
    181283 8g5z:Le (2.64) BS02 MG ? GO:0002181 ... P62910 37020024
    181284 8g5z:Lg (2.64) BS02 ZN ? GO:0002181 ... P49207 37020024
    181285 8g5z:Lg (2.64) BS03 MG ? GO:0002181 ... P49207 37020024
    181286 8g5z:Lj (2.64) BS03 ZN ? GO:0003735 ... P61927 37020024
    181287 8g5z:Lm (2.64) BS02 ZN N/A GO:0003735 ... N/A 37020024
    181288 8g5z:Lo (2.64) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    181289 8g5z:Lp (2.64) BS02 ZN ? GO:0002181 ... P61513 37020024
    181290 8g5z:SF (2.64) BS02 MG ? GO:0000028 ... P46782 37020024
    181291 8g5z:SO (2.64) BS02 MG N/A GO:0003735 ... N/A 37020024
    181292 8g5z:SX (2.64) BS03 MG N/A GO:0003735 ... N/A 37020024
    181293 8g5z:Sa (2.64) BS02 ZN ? GO:0003735 ... P62854 37020024
    181294 8g5z:Sd (2.64) BS02 ZN ? GO:0002181 ... P62273 37020024
    181295 8g5z:Sd (2.64) BS03 MG ? GO:0002181 ... P62273 37020024
    181296 8g5z:Sf (2.64) BS02 ZN N/A GO:0003735 ... N/A 37020024
    181297 8g60:EF (2.54) BS06 MG 3.6.5.- GO:0000049 ... P68104 37020024
    181298 8g60:LA (2.54) BS03 MG N/A GO:0003723 ... N/A 37020024
    181299 8g60:LI (2.54) BS04 MG ? GO:0000027 ... P27635 37020024
    181300 8g60:LL (2.54) BS03 MG ? GO:0001824 ... P26373 37020024
    181301 8g60:Le (2.54) BS02 MG ? GO:0002181 ... P62910 37020024
    181302 8g60:Lf (2.54) BS02 MG ? GO:0000049 ... P18077 37020024
    181303 8g60:Lg (2.54) BS02 ZN ? GO:0002181 ... P49207 37020024
    181304 8g60:Lg (2.54) BS03 MG ? GO:0002181 ... P49207 37020024
    181305 8g60:Lj (2.54) BS03 ZN ? GO:0002181 ... P61927 37020024
    181306 8g60:Lm (2.54) BS02 ZN N/A GO:0003735 ... N/A 37020024
    181307 8g60:Lo (2.54) BS03 ZN ? GO:0003735 ... J3KQN4 37020024
    181308 8g60:Lp (2.54) BS02 ZN ? GO:0002181 ... P61513 37020024
    181309 8g60:SF (2.54) BS02 MG ? GO:0000028 ... P46782 37020024
    181310 8g60:SS (2.54) BS04 MG ? GO:0002181 ... P62269 37020024
    181311 8g60:Sa (2.54) BS02 ZN ? GO:0002181 ... P62854 37020024
    181312 8g60:Sd (2.54) BS02 MG ? GO:0002181 ... P62273 37020024
    181313 8g60:Sd (2.54) BS03 ZN ? GO:0002181 ... P62273 37020024
    181314 8g61:5A (2.94) BS03 MG N/A GO:0003723 ... N/A 37020024
    181315 8g61:LA (2.94) BS03 MG N/A GO:0003723 ... N/A 37020024
    181316 8g61:LN (2.94) BS03 MG ? GO:0002181 ... P61313 37020024
    181317 8g61:Le (2.94) BS02 MG ? GO:0002181 ... P62910 37020024
    181318 8g61:Lg (2.94) BS02 ZN ? GO:0002181 ... P49207 37020024
    181319 8g61:Lj (2.94) BS03 ZN ? GO:0002181 ... P61927 37020024
    181320 8g61:Lm (2.94) BS02 ZN N/A GO:0003735 ... N/A 37020024
    181321 8g61:Lo (2.94) BS04 ZN ? GO:0003735 ... J3KQN4 37020024
    181322 8g61:Lp (2.94) BS02 ZN ? GO:0002181 ... P61513 37020024
    181323 8g61:Sa (2.94) BS02 ZN ? GO:0002181 ... P62854 37020024
    181324 8g61:Sd (2.94) BS02 ZN ? GO:0002181 ... P62273 37020024
    181325 8g62:A (2.17) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 N/A
    181326 8g62:B (2.17) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 N/A
    181327 8g62:C (2.17) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 N/A
    181328 8g66:B (3.45) BS01 ZN ? GO:0005515 ... Q96SW2 N/A
    181329 8g66:E (3.45) BS01 ZN ? GO:0005515 ... Q96SW2 N/A
    181330 8g6c:A (2.82) BS01 MN 3.5.4.16 GO:0003933 ... A0A069BB45 N/A
    181331 8g6c:B (2.82) BS01 MN 3.5.4.16 GO:0003933 ... A0A069BB45 N/A
    181332 8g6d:B (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    181333 8g6d:D (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    181334 8g6d:F (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    181335 8g6d:H (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    181336 8g6d:J (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    181337 8g6d:L (3.92) BS01 ZN ? GO:0046765 ... P10215 38227586
    181338 8g6j:EF (2.8) BS06 MG 3.6.5.- GO:0000049 ... P68104 37020024
    181339 8g6j:EF (2.8) BS08 MG 3.6.5.- GO:0000049 ... P68104 37020024
    181340 8g6j:LA (2.8) BS03 MG N/A GO:0003723 ... N/A 37020024
    181341 8g6j:LH (2.8) BS02 MG ? GO:0002181 ... P32969 37020024
    181342 8g6j:LI (2.8) BS03 MG ? GO:0000027 ... P27635 37020024
    181343 8g6j:LN (2.8) BS03 MG ? GO:0002181 ... P61313 37020024
    181344 8g6j:Le (2.8) BS02 MG ? GO:0002181 ... P62910 37020024
    181345 8g6j:Lg (2.8) BS02 ZN ? GO:0002181 ... P49207 37020024
    181346 8g6j:Lg (2.8) BS03 MG ? GO:0002181 ... P49207 37020024
    181347 8g6j:Lj (2.8) BS03 ZN ? GO:0002181 ... P61927 37020024
    181348 8g6j:Lm (2.8) BS02 ZN N/A GO:0003735 ... N/A 37020024
    181349 8g6j:Lo (2.8) BS03 ZN ? GO:0003735 ... J3KQN4 37020024
    181350 8g6j:Lp (2.8) BS02 ZN ? GO:0002181 ... P61513 37020024
    181351 8g6j:SF (2.8) BS02 MG ? GO:0000028 ... P46782 37020024
    181352 8g6j:SO (2.8) BS02 MG ? GO:0000028 ... P62263 37020024
    181353 8g6j:SX (2.8) BS03 MG N/A GO:0003735 ... N/A 37020024
    181354 8g6j:Sa (2.8) BS02 ZN ? GO:0002181 ... P62854 37020024
    181355 8g6j:Sd (2.8) BS02 ZN ? GO:0002181 ... P62273 37020024
    181356 8g6j:Sd (2.8) BS03 MG ? GO:0002181 ... P62273 37020024
    181357 8g6j:Sf (2.8) BS02 ZN ? GO:0002181 ... P62979 37020024
    181358 8g6p:A (1.45) BS03 MG 6.3.2.13 GO:0000287 ... G7CMG5 36944394
    181359 8g6r:A (3.3) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0003723 ... A0A0U2C263 36993498
    181360 8g6r:A (3.3) BS04 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0003723 ... A0A0U2C263 36993498
    181361 8g6w:3 (2.02) BS02 ZN ? GO:0002181 ... P0A7Q6 37396857
    181362 8g6w:4 (2.02) BS02 ZN ? GO:0002181 ... P0A7M9 37396857
    181363 8g6w:m (2.02) BS02 MG ? GO:0000027 ... P0AG44 37396857
    181364 8g6x:3 (2.31) BS02 ZN ? GO:0002181 ... P0A7Q6 37396857
    181365 8g6x:4 (2.31) BS02 ZN ? GO:0002181 ... P0A7M9 37396857
    181366 8g6y:3 (2.09) BS02 ZN ? GO:0002181 ... P0A7Q6 37396857
    181367 8g6y:4 (2.09) BS02 ZN ? GO:0002181 ... P0A7M9 37396857
    181368 8g7e:J (3.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    181369 8g7f:A (2.04) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181370 8g7f:B (2.04) BS03 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181371 8g7g:A (2.23) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181372 8g7g:B (2.23) BS03 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181373 8g7h:A (1.81) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181374 8g7h:B (1.81) BS03 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181375 8g7i:A (1.83) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181376 8g7i:B (1.83) BS01 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    181377 8g7p:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 38538914
    181378 8g7p:6 (2.9) BS02 MG ? GO:0003735 ... B7MGC4 38538914
    181379 8g7p:8 (2.9) BS02 ZN ? GO:0003735 ... A0A0E2L017 38538914
    181380 8g7p:E (2.9) BS02 MG ? GO:0003735 ... A1AGK6 38538914
    181381 8g7p:N (2.9) BS02 MG N/A GO:0003735 ... N/A 38538914
    181382 8g7p:N (2.9) BS03 MG N/A GO:0003735 ... N/A 38538914
    181383 8g7p:R (2.9) BS03 MG N/A GO:0003735 ... N/A 38538914
    181384 8g7p:U (2.9) BS02 MG ? GO:0002181 ... P61175 38538914
    181385 8g7p:j (2.9) BS02 MG N/A GO:0003723 ... N/A 38538914
    181386 8g7p:z (2.9) BS04 MG ? GO:0003746 ... E2QJ06 38538914
    181387 8g7q:3 (3.1) BS02 ZN ? GO:0002181 ... P0A7M9 38538914
    181388 8g7q:8 (3.1) BS02 ZN ? GO:0003735 ... A0A0E2L017 38538914
    181389 8g7q:d (3.1) BS02 MG ? GO:0000028 ... P0A7V8 38538914
    181390 8g7q:i (3.1) BS03 MG N/A GO:0003735 ... N/A 38538914
    181391 8g7q:p (3.1) BS02 MG ? GO:0000028 ... C3SYP2 38538914
    181392 8g7q:z (3.1) BS05 MG ? GO:0003746 ... E2QJ06 38538914
    181393 8g7r:3 (2.8) BS02 ZN ? GO:0002181 ... P0A7M9 38538914
    181394 8g7r:4 (2.8) BS02 MG N/A GO:0003735 ... N/A 38538914
    181395 8g7r:8 (2.8) BS02 ZN ? GO:0003735 ... A0A0E2L017 38538914
    181396 8g7r:E (2.8) BS02 MG ? GO:0003735 ... A1AGK6 38538914
    181397 8g7r:L (2.8) BS02 MG N/A GO:0003735 ... N/A 38538914
    181398 8g7r:L (2.8) BS03 MG N/A GO:0003735 ... N/A 38538914
    181399 8g7r:V (2.8) BS02 MG N/A GO:0003735 ... N/A 38538914
    181400 8g7s:3 (3.1) BS02 ZN ? GO:0002181 ... P0A7M9 38538914

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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