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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    181001 8g2d:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38238495
    181002 8g2d:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38238495
    181003 8g2d:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38238495
    181004 8g2d:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38238495
    181005 8g2d:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38238495
    181006 8g2d:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38238495
    181007 8g2d:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38238495
    181008 8g2d:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38238495
    181009 8g2d:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38238495
    181010 8g2d:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38238495
    181011 8g2d:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38238495
    181012 8g2d:1Q (2.7) BS08 MG ? GO:0000049 ... P60489 38238495
    181013 8g2d:1Q (2.7) BS09 MG ? GO:0000049 ... P60489 38238495
    181014 8g2d:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38238495
    181015 8g2d:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38238495
    181016 8g2d:1R (2.7) BS04 MG ? GO:0003735 ... Q9Z9H5 38238495
    181017 8g2d:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38238495
    181018 8g2d:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 38238495
    181019 8g2d:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38238495
    181020 8g2d:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38238495
    181021 8g2d:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38238495
    181022 8g2d:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38238495
    181023 8g2d:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38238495
    181024 8g2d:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38238495
    181025 8g2d:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38238495
    181026 8g2d:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38238495
    181027 8g2d:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38238495
    181028 8g2d:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38238495
    181029 8g2d:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38238495
    181030 8g2d:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    181031 8g2d:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    181032 8g2d:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38238495
    181033 8g2d:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38238495
    181034 8g2d:1W (2.7) BS06 MG ? GO:0003735 ... Q5SHP3 38238495
    181035 8g2d:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    181036 8g2d:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38238495
    181037 8g2d:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38238495
    181038 8g2d:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38238495
    181039 8g2d:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38238495
    181040 8g2d:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38238495
    181041 8g2d:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 38238495
    181042 8g2d:1Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 38238495
    181043 8g2d:1b (2.7) BS02 MG ? GO:0003735 ... P80371 38238495
    181044 8g2d:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    181045 8g2d:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    181046 8g2d:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38238495
    181047 8g2d:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38238495
    181048 8g2d:1n (2.7) BS02 MG ? GO:0003735 ... P0DOY6 38238495
    181049 8g2d:1n (2.7) BS03 ZN ? GO:0003735 ... P0DOY6 38238495
    181050 8g2d:21 (2.7) BS03 MG ? GO:0003735 ... P60494 38238495
    181051 8g2d:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    181052 8g2d:23 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    181053 8g2d:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    181054 8g2d:25 (2.7) BS02 MG ? GO:0003735 ... P80339 38238495
    181055 8g2d:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 38238495
    181056 8g2d:26 (2.7) BS02 MG ? GO:0000049 ... P35871 38238495
    181057 8g2d:26 (2.7) BS03 ZN ? GO:0000049 ... P35871 38238495
    181058 8g2d:29 (2.7) BS02 MG ? GO:0003735 ... Q5SHR2 38238495
    181059 8g2d:29 (2.7) BS03 ZN ? GO:0003735 ... Q5SHR2 38238495
    181060 8g2d:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38238495
    181061 8g2d:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38238495
    181062 8g2d:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38238495
    181063 8g2d:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38238495
    181064 8g2d:2E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    181065 8g2d:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    181066 8g2d:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    181067 8g2d:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    181068 8g2d:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38238495
    181069 8g2d:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38238495
    181070 8g2d:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38238495
    181071 8g2d:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38238495
    181072 8g2d:2V (2.7) BS03 MG ? GO:0003723 ... P60492 38238495
    181073 8g2d:2V (2.7) BS04 MG ? GO:0003723 ... P60492 38238495
    181074 8g2d:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    181075 8g2d:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    181076 8g2d:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 38238495
    181077 8g2d:2Z (2.7) BS02 MG ? GO:0003723 ... Q5SHZ1 38238495
    181078 8g2d:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38238495
    181079 8g2d:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    181080 8g2d:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    181081 8g2d:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38238495
    181082 8g2d:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38238495
    181083 8g2d:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38238495
    181084 8g2d:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38238495
    181085 8g2d:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38238495
    181086 8g2d:2r (2.7) BS02 MG ? GO:0003735 ... Q5SLQ0 38238495
    181087 8g2d:2t (2.7) BS02 MG ? GO:0003723 ... P80380 38238495
    181088 8g2e:A (1.838) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 37242488
    181089 8g2l:A (1.42) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181090 8g2l:A (1.42) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181091 8g2l:B (1.42) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181092 8g2l:B (1.42) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181093 8g2p:A (2.521) BS06 MG N/A N/A Q8C6L5 N/A
    181094 8g2p:A (2.521) BS07 ZN N/A N/A Q8C6L5 N/A
    181095 8g2p:C (2.521) BS06 MG N/A N/A Q8C6L5 N/A
    181096 8g2p:C (2.521) BS07 ZN N/A N/A Q8C6L5 N/A
    181097 8g2q:A (2.37) BS07 MG N/A N/A Q8C6L5 N/A
    181098 8g2q:A (2.37) BS08 ZN N/A N/A Q8C6L5 N/A
    181099 8g2q:C (2.37) BS06 MG N/A N/A Q8C6L5 N/A
    181100 8g2q:C (2.37) BS07 ZN N/A N/A Q8C6L5 N/A
    181101 8g2s:A (1.45) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181102 8g2s:A (1.45) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181103 8g2s:B (1.45) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181104 8g2s:B (1.45) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181105 8g2w:J (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    181106 8g2x:A (1.47) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181107 8g2x:A (1.47) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181108 8g2x:B (1.47) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181109 8g2x:B (1.47) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181110 8g2z:AG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181111 8g2z:BB (4.1) BS02 MG ? GO:0000226 ... P41352 37061538
    181112 8g2z:BC (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181113 8g2z:BE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181114 8g2z:CE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181115 8g2z:CG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181116 8g2z:CI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181117 8g2z:DA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181118 8g2z:DE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181119 8g2z:DI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181120 8g2z:DM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181121 8g2z:EK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181122 8g2z:IA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181123 8g2z:IE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181124 8g2z:IG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181125 8g2z:IM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181126 8g2z:JC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181127 8g2z:JG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181128 8g2z:JI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181129 8g2z:JK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181130 8g2z:KE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181131 8g2z:NM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181132 8g2z:OA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181133 8g2z:OC (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181134 8g2z:OE (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181135 8g2z:OI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181136 8g2z:PC (4.1) BS01 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181137 8g2z:PE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181138 8g2z:PI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181139 8g2z:QE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181140 8g2z:QK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181141 8g2z:QM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181142 8g2z:SK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181143 8g2z:TK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181144 8g2z:UE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181145 8g2z:UI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181146 8g2z:UK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181147 8g2z:UM (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181148 8g2z:VA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181149 8g2z:VE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181150 8g2z:VG (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181151 8g2z:VK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181152 8g2z:WA (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181153 8g2z:WE (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181154 8g2z:WI (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181155 8g2z:WK (4.1) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181156 8g30:M (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181157 8g30:N (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181158 8g30:O (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181159 8g30:P (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181160 8g32:A (1.85) BS01 CA ? GO:0015485 ... A0A7T7HCZ8 38866748
    181161 8g32:B (1.85) BS01 CA ? GO:0015485 ... A0A7T7HCZ8 38866748
    181162 8g39:A (1.42) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181163 8g39:A (1.42) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181164 8g39:B (1.42) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181165 8g39:B (1.42) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    181166 8g3d:CC (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181167 8g3d:CE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181168 8g3d:CI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181169 8g3d:DE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181170 8g3d:DI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181171 8g3d:HI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181172 8g3d:JC (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181173 8g3d:JE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181174 8g3d:JG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181175 8g3d:JK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181176 8g3d:JM (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181177 8g3d:KG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181178 8g3d:KI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181179 8g3d:LK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181180 8g3d:NK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181181 8g3d:PE (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181182 8g3d:PG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181183 8g3d:PI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181184 8g3d:PK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181185 8g3d:QI (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181186 8g3d:QK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181187 8g3d:VK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181188 8g3d:VM (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181189 8g3d:WG (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181190 8g3d:WK (3.7) BS02 MG 3.6.5.- GO:0000226 ... P41351 37061538
    181191 8g3m:G (3.0) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181192 8g3m:J (3.0) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181193 8g3m:K (3.0) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181194 8g3m:L (3.0) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181195 8g3n:G (2.9) BS02 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181196 8g3n:J (2.9) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181197 8g3n:K (2.9) BS02 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181198 8g3n:L (2.9) BS03 CA 3.2.1.18 GO:0004308 ... A0A4D6K9W1 37258672
    181199 8g3o:B (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    181200 8g3o:G (3.1) BS03 CA 3.2.1.18 GO:0004308 ... A0A5P8ETS7 37258672
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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