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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180801 8g2b:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    180802 8g2b:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    180803 8g2b:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    180804 8g2b:2F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    180805 8g2b:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    180806 8g2b:2Q (2.55) BS04 MG ? GO:0000049 ... P60489 38238495
    180807 8g2b:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38238495
    180808 8g2b:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38238495
    180809 8g2b:2T (2.55) BS03 MG ? GO:0003735 ... P60490 38238495
    180810 8g2b:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38238495
    180811 8g2b:2V (2.55) BS02 MG ? GO:0003723 ... P60492 38238495
    180812 8g2b:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    180813 8g2b:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    180814 8g2b:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 38238495
    180815 8g2b:2d (2.55) BS02 MG ? GO:0003723 ... P80373 38238495
    180816 8g2b:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    180817 8g2b:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    180818 8g2b:2k (2.55) BS02 MG ? GO:0003735 ... P80376 38238495
    180819 8g2b:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 38238495
    180820 8g2b:2l (2.55) BS04 MG ? GO:0000049 ... Q5SHN3 38238495
    180821 8g2b:2l (2.55) BS05 MG ? GO:0000049 ... Q5SHN3 38238495
    180822 8g2b:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38238495
    180823 8g2b:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 38238495
    180824 8g2b:2q (2.55) BS03 MG ? GO:0003735 ... P0DOY7 38238495
    180825 8g2b:2t (2.55) BS02 MG ? GO:0003723 ... P80380 38238495
    180826 8g2c:10 (2.65) BS04 MG ? GO:0003735 ... P60493 38238495
    180827 8g2c:10 (2.65) BS05 MG ? GO:0003735 ... P60493 38238495
    180828 8g2c:10 (2.65) BS06 MG ? GO:0003735 ... P60493 38238495
    180829 8g2c:11 (2.65) BS03 MG ? GO:0003735 ... P60494 38238495
    180830 8g2c:12 (2.65) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    180831 8g2c:13 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    180832 8g2c:13 (2.65) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    180833 8g2c:14 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    180834 8g2c:15 (2.65) BS02 MG ? GO:0003735 ... P80339 38238495
    180835 8g2c:15 (2.65) BS03 ZN ? GO:0003735 ... P80339 38238495
    180836 8g2c:16 (2.65) BS02 MG ? GO:0000049 ... P35871 38238495
    180837 8g2c:16 (2.65) BS03 ZN ? GO:0000049 ... P35871 38238495
    180838 8g2c:17 (2.65) BS02 MG ? GO:0003735 ... P80340 38238495
    180839 8g2c:17 (2.65) BS03 MG ? GO:0003735 ... P80340 38238495
    180840 8g2c:17 (2.65) BS04 MG ? GO:0003735 ... P80340 38238495
    180841 8g2c:17 (2.65) BS05 MG ? GO:0003735 ... P80340 38238495
    180842 8g2c:18 (2.65) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    180843 8g2c:18 (2.65) BS03 MG ? GO:0003735 ... Q5SKU1 38238495
    180844 8g2c:18 (2.65) BS04 MG ? GO:0003735 ... Q5SKU1 38238495
    180845 8g2c:18 (2.65) BS05 MG ? GO:0003735 ... Q5SKU1 38238495
    180846 8g2c:19 (2.65) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495
    180847 8g2c:1D (2.65) BS03 MG ? GO:0002181 ... P60405 38238495
    180848 8g2c:1D (2.65) BS04 MG ? GO:0002181 ... P60405 38238495
    180849 8g2c:1D (2.65) BS05 MG ? GO:0002181 ... P60405 38238495
    180850 8g2c:1D (2.65) BS06 MG ? GO:0002181 ... P60405 38238495
    180851 8g2c:1D (2.65) BS07 MG ? GO:0002181 ... P60405 38238495
    180852 8g2c:1D (2.65) BS08 MG ? GO:0002181 ... P60405 38238495
    180853 8g2c:1D (2.65) BS09 MG ? GO:0002181 ... P60405 38238495
    180854 8g2c:1D (2.65) BS10 MG ? GO:0002181 ... P60405 38238495
    180855 8g2c:1D (2.65) BS11 MG ? GO:0002181 ... P60405 38238495
    180856 8g2c:1D (2.65) BS12 MG ? GO:0002181 ... P60405 38238495
    180857 8g2c:1D (2.65) BS13 MG ? GO:0002181 ... P60405 38238495
    180858 8g2c:1E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    180859 8g2c:1E (2.65) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    180860 8g2c:1E (2.65) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    180861 8g2c:1F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    180862 8g2c:1F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    180863 8g2c:1F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    180864 8g2c:1F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    180865 8g2c:1F (2.65) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    180866 8g2c:1F (2.65) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    180867 8g2c:1F (2.65) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    180868 8g2c:1F (2.65) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    180869 8g2c:1F (2.65) BS10 MG ? GO:0003735 ... Q5SHN9 38238495
    180870 8g2c:1F (2.65) BS11 MG ? GO:0003735 ... Q5SHN9 38238495
    180871 8g2c:1G (2.65) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    180872 8g2c:1I (2.65) BS02 MG ? GO:0003735 ... Q5SLQ1 38238495
    180873 8g2c:1N (2.65) BS02 MG ? GO:0003729 ... P60488 38238495
    180874 8g2c:1N (2.65) BS03 MG ? GO:0003729 ... P60488 38238495
    180875 8g2c:1O (2.65) BS03 MG ? GO:0003735 ... Q5SHP8 38238495
    180876 8g2c:1O (2.65) BS04 MG ? GO:0003735 ... Q5SHP8 38238495
    180877 8g2c:1O (2.65) BS05 MG ? GO:0003735 ... Q5SHP8 38238495
    180878 8g2c:1P (2.65) BS02 MG ? GO:0003735 ... Q5SHQ7 38238495
    180879 8g2c:1P (2.65) BS03 MG ? GO:0003735 ... Q5SHQ7 38238495
    180880 8g2c:1P (2.65) BS04 MG ? GO:0003735 ... Q5SHQ7 38238495
    180881 8g2c:1P (2.65) BS05 MG ? GO:0003735 ... Q5SHQ7 38238495
    180882 8g2c:1P (2.65) BS06 MG ? GO:0003735 ... Q5SHQ7 38238495
    180883 8g2c:1P (2.65) BS07 MG ? GO:0003735 ... Q5SHQ7 38238495
    180884 8g2c:1Q (2.65) BS05 MG ? GO:0000049 ... P60489 38238495
    180885 8g2c:1Q (2.65) BS06 MG ? GO:0000049 ... P60489 38238495
    180886 8g2c:1Q (2.65) BS07 MG ? GO:0000049 ... P60489 38238495
    180887 8g2c:1Q (2.65) BS08 MG ? GO:0000049 ... P60489 38238495
    180888 8g2c:1R (2.65) BS02 MG ? GO:0003735 ... Q9Z9H5 38238495
    180889 8g2c:1R (2.65) BS03 MG ? GO:0003735 ... Q9Z9H5 38238495
    180890 8g2c:1S (2.65) BS03 MG ? GO:0003735 ... Q5SHQ4 38238495
    180891 8g2c:1S (2.65) BS04 MG ? GO:0003735 ... Q5SHQ4 38238495
    180892 8g2c:1U (2.65) BS02 MG ? GO:0000027 ... P60491 38238495
    180893 8g2c:1U (2.65) BS03 MG ? GO:0000027 ... P60491 38238495
    180894 8g2c:1U (2.65) BS04 MG ? GO:0000027 ... P60491 38238495
    180895 8g2c:1U (2.65) BS05 MG ? GO:0000027 ... P60491 38238495
    180896 8g2c:1U (2.65) BS06 MG ? GO:0000027 ... P60491 38238495
    180897 8g2c:1U (2.65) BS07 MG ? GO:0000027 ... P60491 38238495
    180898 8g2c:1U (2.65) BS08 MG ? GO:0000027 ... P60491 38238495
    180899 8g2c:1V (2.65) BS02 MG ? GO:0003723 ... P60492 38238495
    180900 8g2c:1V (2.65) BS03 MG ? GO:0003723 ... P60492 38238495
    180901 8g2c:1V (2.65) BS04 MG ? GO:0003723 ... P60492 38238495
    180902 8g2c:1V (2.65) BS05 MG ? GO:0003723 ... P60492 38238495
    180903 8g2c:1V (2.65) BS06 MG ? GO:0003723 ... P60492 38238495
    180904 8g2c:1W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    180905 8g2c:1W (2.65) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    180906 8g2c:1W (2.65) BS04 MG ? GO:0003735 ... Q5SHP3 38238495
    180907 8g2c:1W (2.65) BS05 MG ? GO:0003735 ... Q5SHP3 38238495
    180908 8g2c:1X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    180909 8g2c:1X (2.65) BS03 MG ? GO:0000027 ... Q5SHP0 38238495
    180910 8g2c:1X (2.65) BS04 MG ? GO:0000027 ... Q5SHP0 38238495
    180911 8g2c:1X (2.65) BS05 MG ? GO:0000027 ... Q5SHP0 38238495
    180912 8g2c:1X (2.65) BS06 MG ? GO:0000027 ... Q5SHP0 38238495
    180913 8g2c:1Y (2.65) BS02 MG ? GO:0003723 ... Q5SHP9 38238495
    180914 8g2c:1Y (2.65) BS03 ZN ? GO:0003723 ... Q5SHP9 38238495
    180915 8g2c:1e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    180916 8g2c:1e (2.65) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    180917 8g2c:1f (2.65) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    180918 8g2c:1k (2.65) BS02 MG ? GO:0003735 ... P80376 38238495
    180919 8g2c:1l (2.65) BS02 MG ? GO:0000049 ... Q5SHN3 38238495
    180920 8g2c:1m (2.65) BS04 MG ? GO:0000049 ... P80377 38238495
    180921 8g2c:1n (2.65) BS02 ZN ? GO:0003735 ... P0DOY6 38238495
    180922 8g2c:23 (2.65) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    180923 8g2c:24 (2.65) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    180924 8g2c:25 (2.65) BS02 ZN ? GO:0003735 ... P80339 38238495
    180925 8g2c:26 (2.65) BS02 ZN ? GO:0000049 ... P35871 38238495
    180926 8g2c:29 (2.65) BS02 MG ? GO:0003735 ... Q5SHR2 38238495
    180927 8g2c:29 (2.65) BS03 ZN ? GO:0003735 ... Q5SHR2 38238495
    180928 8g2c:2D (2.65) BS03 MG ? GO:0002181 ... P60405 38238495
    180929 8g2c:2D (2.65) BS04 MG ? GO:0002181 ... P60405 38238495
    180930 8g2c:2D (2.65) BS05 MG ? GO:0002181 ... P60405 38238495
    180931 8g2c:2D (2.65) BS06 MG ? GO:0002181 ... P60405 38238495
    180932 8g2c:2D (2.65) BS07 MG ? GO:0002181 ... P60405 38238495
    180933 8g2c:2D (2.65) BS08 MG ? GO:0002181 ... P60405 38238495
    180934 8g2c:2E (2.65) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    180935 8g2c:2F (2.65) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    180936 8g2c:2F (2.65) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    180937 8g2c:2F (2.65) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    180938 8g2c:2F (2.65) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    180939 8g2c:2G (2.65) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    180940 8g2c:2Q (2.65) BS05 MG ? GO:0000049 ... P60489 38238495
    180941 8g2c:2Q (2.65) BS06 MG ? GO:0000049 ... P60489 38238495
    180942 8g2c:2U (2.65) BS02 MG ? GO:0000027 ... P60491 38238495
    180943 8g2c:2V (2.65) BS02 MG ? GO:0003723 ... P60492 38238495
    180944 8g2c:2W (2.65) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    180945 8g2c:2X (2.65) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    180946 8g2c:2Y (2.65) BS02 ZN ? GO:0003723 ... Q5SHP9 38238495
    180947 8g2c:2d (2.65) BS02 MG ? GO:0003723 ... P80373 38238495
    180948 8g2c:2e (2.65) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    180949 8g2c:2f (2.65) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    180950 8g2c:2k (2.65) BS02 MG ? GO:0003735 ... P80376 38238495
    180951 8g2c:2n (2.65) BS02 ZN ? GO:0003735 ... P0DOY6 38238495
    180952 8g2c:2q (2.65) BS02 MG ? GO:0003735 ... P0DOY7 38238495
    180953 8g2c:2q (2.65) BS03 MG ? GO:0003735 ... P0DOY7 38238495
    180954 8g2d:10 (2.7) BS03 MG ? GO:0003735 ... P60493 38238495
    180955 8g2d:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38238495
    180956 8g2d:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38238495
    180957 8g2d:11 (2.7) BS03 MG ? GO:0003735 ... P60494 38238495
    180958 8g2d:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    180959 8g2d:12 (2.7) BS03 MG ? GO:0003735 ... Q5SHP6 38238495
    180960 8g2d:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    180961 8g2d:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    180962 8g2d:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    180963 8g2d:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38238495
    180964 8g2d:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 38238495
    180965 8g2d:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38238495
    180966 8g2d:16 (2.7) BS03 MG ? GO:0000049 ... P35871 38238495
    180967 8g2d:16 (2.7) BS04 ZN ? GO:0000049 ... P35871 38238495
    180968 8g2d:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38238495
    180969 8g2d:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38238495
    180970 8g2d:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    180971 8g2d:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495
    180972 8g2d:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38238495
    180973 8g2d:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38238495
    180974 8g2d:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38238495
    180975 8g2d:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38238495
    180976 8g2d:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38238495
    180977 8g2d:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38238495
    180978 8g2d:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38238495
    180979 8g2d:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38238495
    180980 8g2d:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38238495
    180981 8g2d:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38238495
    180982 8g2d:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    180983 8g2d:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    180984 8g2d:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    180985 8g2d:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    180986 8g2d:1E (2.7) BS06 MG ? GO:0003735 ... Q5SHN8 38238495
    180987 8g2d:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    180988 8g2d:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    180989 8g2d:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    180990 8g2d:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    180991 8g2d:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    180992 8g2d:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    180993 8g2d:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    180994 8g2d:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    180995 8g2d:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    180996 8g2d:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 38238495
    180997 8g2d:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 38238495
    180998 8g2d:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38238495
    180999 8g2d:1N (2.7) BS03 MG ? GO:0003729 ... P60488 38238495
    181000 8g2d:1N (2.7) BS04 MG ? GO:0003729 ... P60488 38238495
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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