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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    180401 8g1j:C (2.3) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    180402 8g1l:A (1.06) BS01 CA ? N/A Q5HKE8 N/A
    180403 8g1l:A (1.06) BS02 MG ? N/A Q5HKE8 N/A
    180404 8g1l:A (1.06) BS03 MG ? N/A Q5HKE8 N/A
    180405 8g1l:A (1.06) BS04 MG ? N/A Q5HKE8 N/A
    180406 8g1m:A (1.93) BS01 CA ? N/A Q2G2B2 N/A
    180407 8g1n:A (2.74) BS01 MG 2.7.8.36 GO:0016020 ... A7ZET4 37096962
    180408 8g1n:B (2.74) BS01 MG 2.7.8.36 GO:0016020 ... A7ZET4 37096962
    180409 8g1s:J (3.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37264140
    180410 8g1z:A (1.87) BS02 ZN ? N/A F8W4B7 37902787
    180411 8g20:A (1.766) BS02 ZN ? N/A F8W4B7 37902787
    180412 8g20:B (1.766) BS03 ZN ? N/A F8W4B7 37902787
    180413 8g23:A (2.71) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    180414 8g23:A (2.71) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    180415 8g23:C (2.71) BS05 MG 2.7.7.86 N/A Q8C6L5 38740774
    180416 8g23:C (2.71) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    180417 8g29:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38238495
    180418 8g29:10 (2.55) BS05 MG ? GO:0003735 ... P60493 38238495
    180419 8g29:11 (2.55) BS03 MG ? GO:0003735 ... P60494 38238495
    180420 8g29:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    180421 8g29:12 (2.55) BS03 MG ? GO:0003735 ... Q5SHP6 38238495
    180422 8g29:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    180423 8g29:13 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    180424 8g29:14 (2.55) BS02 MG ? GO:0003735 ... Q5SJE1 38238495
    180425 8g29:14 (2.55) BS03 ZN ? GO:0003735 ... Q5SJE1 38238495
    180426 8g29:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38238495
    180427 8g29:15 (2.55) BS03 ZN ? GO:0003735 ... P80339 38238495
    180428 8g29:16 (2.55) BS02 MG ? GO:0000049 ... P35871 38238495
    180429 8g29:16 (2.55) BS03 ZN ? GO:0000049 ... P35871 38238495
    180430 8g29:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38238495
    180431 8g29:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38238495
    180432 8g29:17 (2.55) BS04 MG ? GO:0003735 ... P80340 38238495
    180433 8g29:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    180434 8g29:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38238495
    180435 8g29:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38238495
    180436 8g29:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495
    180437 8g29:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38238495
    180438 8g29:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38238495
    180439 8g29:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38238495
    180440 8g29:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38238495
    180441 8g29:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38238495
    180442 8g29:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38238495
    180443 8g29:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38238495
    180444 8g29:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38238495
    180445 8g29:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38238495
    180446 8g29:1D (2.55) BS12 MG ? GO:0002181 ... P60405 38238495
    180447 8g29:1D (2.55) BS13 MG ? GO:0002181 ... P60405 38238495
    180448 8g29:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    180449 8g29:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    180450 8g29:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    180451 8g29:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    180452 8g29:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    180453 8g29:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    180454 8g29:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    180455 8g29:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    180456 8g29:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    180457 8g29:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    180458 8g29:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    180459 8g29:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    180460 8g29:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38238495
    180461 8g29:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38238495
    180462 8g29:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 38238495
    180463 8g29:1F (2.55) BS13 MG ? GO:0003735 ... Q5SHN9 38238495
    180464 8g29:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    180465 8g29:1N (2.55) BS02 MG ? GO:0003729 ... P60488 38238495
    180466 8g29:1N (2.55) BS03 MG ? GO:0003729 ... P60488 38238495
    180467 8g29:1N (2.55) BS04 MG ? GO:0003729 ... P60488 38238495
    180468 8g29:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 38238495
    180469 8g29:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 38238495
    180470 8g29:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 38238495
    180471 8g29:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 38238495
    180472 8g29:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 38238495
    180473 8g29:1P (2.55) BS06 MG ? GO:0003735 ... Q5SHQ7 38238495
    180474 8g29:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 38238495
    180475 8g29:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 38238495
    180476 8g29:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 38238495
    180477 8g29:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 38238495
    180478 8g29:1Q (2.55) BS09 MG ? GO:0000049 ... P60489 38238495
    180479 8g29:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 38238495
    180480 8g29:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 38238495
    180481 8g29:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 38238495
    180482 8g29:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 38238495
    180483 8g29:1T (2.55) BS03 MG ? GO:0003735 ... P60490 38238495
    180484 8g29:1U (2.55) BS02 MG ? GO:0000027 ... P60491 38238495
    180485 8g29:1U (2.55) BS03 MG ? GO:0000027 ... P60491 38238495
    180486 8g29:1U (2.55) BS04 MG ? GO:0000027 ... P60491 38238495
    180487 8g29:1U (2.55) BS05 MG ? GO:0000027 ... P60491 38238495
    180488 8g29:1U (2.55) BS06 MG ? GO:0000027 ... P60491 38238495
    180489 8g29:1U (2.55) BS07 MG ? GO:0000027 ... P60491 38238495
    180490 8g29:1U (2.55) BS08 MG ? GO:0000027 ... P60491 38238495
    180491 8g29:1U (2.55) BS09 MG ? GO:0000027 ... P60491 38238495
    180492 8g29:1U (2.55) BS10 MG ? GO:0000027 ... P60491 38238495
    180493 8g29:1V (2.55) BS02 MG ? GO:0003723 ... P60492 38238495
    180494 8g29:1V (2.55) BS03 MG ? GO:0003723 ... P60492 38238495
    180495 8g29:1V (2.55) BS04 MG ? GO:0003723 ... P60492 38238495
    180496 8g29:1V (2.55) BS05 MG ? GO:0003723 ... P60492 38238495
    180497 8g29:1V (2.55) BS06 MG ? GO:0003723 ... P60492 38238495
    180498 8g29:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    180499 8g29:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    180500 8g29:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 38238495
    180501 8g29:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 38238495
    180502 8g29:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    180503 8g29:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 38238495
    180504 8g29:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 38238495
    180505 8g29:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 38238495
    180506 8g29:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 38238495
    180507 8g29:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 38238495
    180508 8g29:1Y (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 38238495
    180509 8g29:1Z (2.55) BS03 MG ? GO:0003723 ... Q5SHZ1 38238495
    180510 8g29:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38238495
    180511 8g29:1e (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 38238495
    180512 8g29:1f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38238495
    180513 8g29:1k (2.55) BS02 MG ? GO:0003735 ... P80376 38238495
    180514 8g29:1m (2.55) BS03 MG ? GO:0000049 ... P80377 38238495
    180515 8g29:1n (2.55) BS02 MG ? GO:0003735 ... P0DOY6 38238495
    180516 8g29:1n (2.55) BS03 ZN ? GO:0003735 ... P0DOY6 38238495
    180517 8g29:1t (2.55) BS02 MG ? GO:0003723 ... P80380 38238495
    180518 8g29:20 (2.55) BS04 MG ? GO:0003735 ... P60493 38238495
    180519 8g29:21 (2.55) BS02 MG ? GO:0003735 ... P60494 38238495
    180520 8g29:23 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    180521 8g29:24 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    180522 8g29:25 (2.55) BS02 MG ? GO:0003735 ... P80339 38238495
    180523 8g29:25 (2.55) BS03 ZN ? GO:0003735 ... P80339 38238495
    180524 8g29:26 (2.55) BS02 ZN ? GO:0000049 ... P35871 38238495
    180525 8g29:27 (2.55) BS02 MG ? GO:0003735 ... P80340 38238495
    180526 8g29:29 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495
    180527 8g29:2D (2.55) BS03 MG ? GO:0002181 ... P60405 38238495
    180528 8g29:2D (2.55) BS04 MG ? GO:0002181 ... P60405 38238495
    180529 8g29:2D (2.55) BS05 MG ? GO:0002181 ... P60405 38238495
    180530 8g29:2E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    180531 8g29:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    180532 8g29:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    180533 8g29:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    180534 8g29:2F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    180535 8g29:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    180536 8g29:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38238495
    180537 8g29:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38238495
    180538 8g29:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38238495
    180539 8g29:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38238495
    180540 8g29:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38238495
    180541 8g29:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38238495
    180542 8g29:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 38238495
    180543 8g29:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38238495
    180544 8g2a:10 (2.45) BS04 MG ? GO:0003735 ... P60493 38238495
    180545 8g2a:10 (2.45) BS05 MG ? GO:0003735 ... P60493 38238495
    180546 8g2a:10 (2.45) BS06 MG ? GO:0003735 ... P60493 38238495
    180547 8g2a:11 (2.45) BS03 MG ? GO:0003735 ... P60494 38238495
    180548 8g2a:11 (2.45) BS04 MG ? GO:0003735 ... P60494 38238495
    180549 8g2a:12 (2.45) BS02 MG ? GO:0003735 ... Q5SHP6 38238495
    180550 8g2a:13 (2.45) BS03 MG ? GO:0003735 ... Q5SHQ6 38238495
    180551 8g2a:13 (2.45) BS04 MG ? GO:0003735 ... Q5SHQ6 38238495
    180552 8g2a:13 (2.45) BS05 MG ? GO:0003735 ... Q5SHQ6 38238495
    180553 8g2a:14 (2.45) BS02 ZN ? GO:0003735 ... Q5SJE1 38238495
    180554 8g2a:15 (2.45) BS02 MG ? GO:0003735 ... P80339 38238495
    180555 8g2a:15 (2.45) BS03 MG ? GO:0003735 ... P80339 38238495
    180556 8g2a:15 (2.45) BS04 MG ? GO:0003735 ... P80339 38238495
    180557 8g2a:15 (2.45) BS05 ZN ? GO:0003735 ... P80339 38238495
    180558 8g2a:16 (2.45) BS02 MG ? GO:0000049 ... P35871 38238495
    180559 8g2a:16 (2.45) BS03 MG ? GO:0000049 ... P35871 38238495
    180560 8g2a:16 (2.45) BS04 MG ? GO:0000049 ... P35871 38238495
    180561 8g2a:16 (2.45) BS05 ZN ? GO:0000049 ... P35871 38238495
    180562 8g2a:17 (2.45) BS02 MG ? GO:0003735 ... P80340 38238495
    180563 8g2a:17 (2.45) BS03 MG ? GO:0003735 ... P80340 38238495
    180564 8g2a:17 (2.45) BS04 MG ? GO:0003735 ... P80340 38238495
    180565 8g2a:17 (2.45) BS05 MG ? GO:0003735 ... P80340 38238495
    180566 8g2a:18 (2.45) BS02 MG ? GO:0003735 ... Q5SKU1 38238495
    180567 8g2a:18 (2.45) BS03 MG ? GO:0003735 ... Q5SKU1 38238495
    180568 8g2a:18 (2.45) BS04 MG ? GO:0003735 ... Q5SKU1 38238495
    180569 8g2a:19 (2.45) BS02 ZN ? GO:0003735 ... Q5SHR2 38238495
    180570 8g2a:1D (2.45) BS03 MG ? GO:0002181 ... P60405 38238495
    180571 8g2a:1D (2.45) BS04 MG ? GO:0002181 ... P60405 38238495
    180572 8g2a:1D (2.45) BS05 MG ? GO:0002181 ... P60405 38238495
    180573 8g2a:1D (2.45) BS06 MG ? GO:0002181 ... P60405 38238495
    180574 8g2a:1D (2.45) BS07 MG ? GO:0002181 ... P60405 38238495
    180575 8g2a:1D (2.45) BS08 MG ? GO:0002181 ... P60405 38238495
    180576 8g2a:1D (2.45) BS09 MG ? GO:0002181 ... P60405 38238495
    180577 8g2a:1D (2.45) BS10 MG ? GO:0002181 ... P60405 38238495
    180578 8g2a:1D (2.45) BS11 MG ? GO:0002181 ... P60405 38238495
    180579 8g2a:1D (2.45) BS12 MG ? GO:0002181 ... P60405 38238495
    180580 8g2a:1E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 38238495
    180581 8g2a:1E (2.45) BS03 MG ? GO:0003735 ... Q5SHN8 38238495
    180582 8g2a:1E (2.45) BS04 MG ? GO:0003735 ... Q5SHN8 38238495
    180583 8g2a:1E (2.45) BS05 MG ? GO:0003735 ... Q5SHN8 38238495
    180584 8g2a:1E (2.45) BS06 MG ? GO:0003735 ... Q5SHN8 38238495
    180585 8g2a:1E (2.45) BS07 MG ? GO:0003735 ... Q5SHN8 38238495
    180586 8g2a:1F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 38238495
    180587 8g2a:1F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 38238495
    180588 8g2a:1F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 38238495
    180589 8g2a:1F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 38238495
    180590 8g2a:1F (2.45) BS06 MG ? GO:0003735 ... Q5SHN9 38238495
    180591 8g2a:1F (2.45) BS07 MG ? GO:0003735 ... Q5SHN9 38238495
    180592 8g2a:1F (2.45) BS08 MG ? GO:0003735 ... Q5SHN9 38238495
    180593 8g2a:1F (2.45) BS09 MG ? GO:0003735 ... Q5SHN9 38238495
    180594 8g2a:1F (2.45) BS10 MG ? GO:0003735 ... Q5SHN9 38238495
    180595 8g2a:1F (2.45) BS11 MG ? GO:0003735 ... Q5SHN9 38238495
    180596 8g2a:1F (2.45) BS12 MG ? GO:0003735 ... Q5SHN9 38238495
    180597 8g2a:1F (2.45) BS13 MG ? GO:0003735 ... Q5SHN9 38238495
    180598 8g2a:1G (2.45) BS04 MG ? GO:0000049 ... Q5SHQ0 38238495
    180599 8g2a:1I (2.45) BS02 MG ? GO:0003735 ... Q5SLQ1 38238495
    180600 8g2a:1N (2.45) BS02 MG ? GO:0003729 ... P60488 38238495
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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