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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    179601 8fgg:B (1.859) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179602 8fgh:A (2.17) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179603 8fgh:B (2.17) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179604 8fgh:C (2.17) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179605 8fgh:D (2.17) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179606 8fgi:A (2.15) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179607 8fgi:B (2.15) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179608 8fgj:A (2.15) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179609 8fgj:B (2.15) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179610 8fgj:D (2.15) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179611 8fgk:A (2.25) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179612 8fgk:B (2.25) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179613 8fgk:C (2.25) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179614 8fgk:D (2.25) BS01 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179615 8fgl:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179616 8fgl:B (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179617 8fgl:C (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179618 8fgl:D (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179619 8fgm:A (2.1) BS05 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179620 8fgm:B (2.1) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179621 8fgm:C (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179622 8fgm:D (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179623 8fgn:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179624 8fgn:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179625 8fgn:C (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179626 8fgn:D (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179627 8fgo:A (1.799) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179628 8fgo:B (1.799) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179629 8fgo:C (1.799) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179630 8fgo:D (1.799) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179631 8fgp:A (1.88) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179632 8fgp:B (1.88) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179633 8fgp:C (1.88) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179634 8fgp:D (1.88) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179635 8fgq:A (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179636 8fgq:B (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179637 8fgq:C (2.2) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179638 8fgq:D (2.2) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179639 8fgr:A (1.98) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179640 8fgr:B (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179641 8fgr:C (1.98) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179642 8fgr:D (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179643 8fgs:A (1.8449) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179644 8fgs:B (1.8449) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179645 8fgs:C (1.8449) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179646 8fgs:D (1.8449) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179647 8fgt:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179648 8fgt:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179649 8fgt:C (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179650 8fgt:D (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179651 8fgu:A (2.0) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179652 8fgu:B (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179653 8fgu:C (2.0) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179654 8fgu:D (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 37433128
    179655 8fgv:A (1.848) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179656 8fgv:B (1.848) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179657 8fgw:A (3.7) BS01 ZN ? GO:0005515 ... Q9P2L0 36775821
    179658 8fgw:B (3.7) BS01 ZN ? GO:0001843 ... Q9HBG6 36775821
    179659 8fgw:B (3.7) BS02 ZN ? GO:0001843 ... Q9HBG6 36775821
    179660 8fgw:C (3.7) BS01 ZN ? GO:0000902 ... Q8NEZ3 36775821
    179661 8fgw:C (3.7) BS02 ZN ? GO:0000902 ... Q8NEZ3 36775821
    179662 8fh3:B (4.3) BS01 ZN ? GO:0001843 ... Q9HBG6 36775821
    179663 8fh3:B (4.3) BS02 ZN ? GO:0001843 ... Q9HBG6 36775821
    179664 8fh3:C (4.3) BS01 ZN ? GO:0000902 ... Q8NEZ3 36775821
    179665 8fh3:C (4.3) BS02 ZN ? GO:0000902 ... Q8NEZ3 36775821
    179666 8fha:A (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    179667 8fha:B (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    179668 8fha:C (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    179669 8fha:D (1.49) BS01 CA N/A N/A A0A6N7UZI9 N/A
    179670 8fhb:A (1.95) BS01 FE ? GO:0006400 ... A5GR51 N/A
    179671 8fhc:A (2.097) BS01 FE ? GO:0006400 ... E1VK89 N/A
    179672 8fhc:A (2.097) BS02 FE ? GO:0006400 ... E1VK89 N/A
    179673 8fhc:B (2.097) BS01 FE ? GO:0006400 ... E1VK89 N/A
    179674 8fhc:B (2.097) BS02 FE ? GO:0006400 ... E1VK89 N/A
    179675 8fho:A (2.95) BS03 NA ? GO:0006811 ... P55017 36792826
    179676 8fho:B (2.95) BS04 NA ? GO:0006811 ... P55017 36792826
    179677 8fhp:A (3.04) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    179678 8fhp:B (3.04) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    179679 8fhq:A (2.81) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    179680 8fhq:B (2.81) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    179681 8fhr:A (2.9) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    179682 8fhr:B (2.9) BS02 NA ? GO:0006811 ... A0A0G2KTI4
    P55017    		 36792826
    179683 8fhs:A (3.3) BS01 CA ? GO:0002520 ... Q13936 37972591
    179684 8fhs:D (3.3) BS01 CA ? N/A P54289 37972591
    179685 8fht:A (3.02) BS01 NA ? GO:0002021 ... P55017 36792826
    179686 8fht:B (3.02) BS01 NA ? GO:0002021 ... P55017 36792826
    179687 8fii:A (2.94) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179688 8fii:B (2.94) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179689 8fij:A (2.799) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179690 8fij:B (2.799) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179691 8fik:A (1.912) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179692 8fik:B (1.912) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179693 8fim:A (2.22) BS03 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179694 8fim:B (2.22) BS03 ZN 3.5.4.38 GO:0000932 ... P31941 37821454
    179695 8fix:D (3.9) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    179696 8fix:D (3.9) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    179697 8fix:D (3.9) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    179698 8fiy:D (7.3) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    179699 8fiy:D (7.3) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 36931247
    179700 8fj8:A (2.17) BS01 CA ? GO:0005509 ... P02638 N/A
    179701 8fj8:A (2.17) BS02 CA ? GO:0005509 ... P02638 N/A
    179702 8fj9:A (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179703 8fj9:B (2.5) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179704 8fjc:A (2.5) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179705 8fjc:B (2.5) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179706 8fjd:A (4.46) BS01 CA ? GO:0015996 ... A0A3B6QC98 36731794
    179707 8fjd:B (4.46) BS01 CA ? GO:0015996 ... A0A3B6QC98 36731794
    179708 8fjh:B (1.54) BS03 CA 3.6.5.2 GO:0003924 ... P11233 37269475
    179709 8fji:B (1.48) BS03 CA 3.6.5.2 GO:0003924 ... P11233 37269475
    179710 8fjk:E (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179711 8fjk:G (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179712 8fjk:I (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179713 8fjk:K (3.3) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179714 8fjl:E (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179715 8fjl:G (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179716 8fjl:I (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179717 8fjl:K (3.27) BS01 ZN 3.6.4.13 GO:0003724 ... Q8JU60 36856784
    179718 8fjm:A (1.9) BS02 ZN 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    179719 8fjm:A (1.9) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    179720 8fjm:B (1.9) BS02 ZN 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    179721 8fjm:B (1.9) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    179722 8fjn:A (2.1) BS02 ZN 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    179723 8fjn:A (2.1) BS03 CA 2.1.1.360 GO:0031151 ... Q581Z0 38503750
    179724 8fk4:A (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179725 8fk4:B (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179726 8fk4:C (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179727 8fk4:D (3.25) BS02 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179728 8fk4:E (3.25) BS04 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179729 8fk4:F (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179730 8fk4:G (3.25) BS02 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179731 8fk4:H (3.25) BS03 CA 2.4.1.5 GO:0009250 ... P08987 37158310
    179732 8fkp:L9 (2.85) BS03 MG ? GO:0002181 ... P61313 37410842
    179733 8fkp:LQ (2.85) BS02 MG ? GO:0002181 ... P62910 37410842
    179734 8fkp:LT (2.85) BS02 MG ? GO:0000049 ... P18077 37410842
    179735 8fkp:LW (2.85) BS03 ZN ? GO:0002181 ... P61927 37410842
    179736 8fkp:SV (2.85) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179737 8fkq:L9 (2.76) BS03 MG ? GO:0002181 ... P61313 37410842
    179738 8fkq:LQ (2.76) BS02 MG ? GO:0002181 ... P62910 37410842
    179739 8fkq:LT (2.76) BS02 MG ? GO:0000049 ... P18077 37410842
    179740 8fkq:LW (2.76) BS03 ZN ? GO:0002181 ... P61927 37410842
    179741 8fkq:SV (2.76) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179742 8fkr:L9 (2.89) BS03 MG ? GO:0002181 ... P61313 37410842
    179743 8fkr:LT (2.89) BS02 MG ? GO:0000049 ... P18077 37410842
    179744 8fkr:LW (2.89) BS03 ZN ? GO:0002181 ... P61927 37410842
    179745 8fkr:SV (2.89) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179746 8fks:L9 (2.88) BS03 MG ? GO:0002181 ... P61313 37410842
    179747 8fks:LQ (2.88) BS02 MG ? GO:0002181 ... P62910 37410842
    179748 8fks:LT (2.88) BS02 MG ? GO:0000049 ... P18077 37410842
    179749 8fks:LW (2.88) BS03 ZN ? GO:0002181 ... P61927 37410842
    179750 8fks:SV (2.88) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179751 8fkt:LQ (2.81) BS02 MG ? GO:0002181 ... P62910 37410842
    179752 8fkt:LT (2.81) BS02 MG ? GO:0000049 ... P18077 37410842
    179753 8fkt:LW (2.81) BS03 ZN ? GO:0002181 ... P61927 37410842
    179754 8fkt:SV (2.81) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179755 8fku:L9 (2.82) BS03 MG ? GO:0002181 ... P61313 37410842
    179756 8fku:LQ (2.82) BS02 MG ? GO:0002181 ... P62910 37410842
    179757 8fku:LT (2.82) BS02 MG ? GO:0000049 ... P18077 37410842
    179758 8fku:LW (2.82) BS03 ZN ? GO:0002181 ... P61927 37410842
    179759 8fku:SR (2.82) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    179760 8fku:SV (2.82) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179761 8fkv:L9 (2.47) BS03 MG ? GO:0002181 ... P61313 37410842
    179762 8fkv:LT (2.47) BS02 MG ? GO:0000049 ... P18077 37410842
    179763 8fkv:LW (2.47) BS03 ZN ? GO:0002181 ... P61927 37410842
    179764 8fkv:SR (2.47) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    179765 8fkv:SU (2.47) BS02 MG ? GO:0003682 ... Q8WTT2 37410842
    179766 8fkv:SV (2.47) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179767 8fkw:L9 (2.5) BS03 MG ? GO:0002181 ... P61313 37410842
    179768 8fkw:LQ (2.5) BS02 MG ? GO:0002181 ... P62910 37410842
    179769 8fkw:LT (2.5) BS02 MG ? GO:0000049 ... P18077 37410842
    179770 8fkw:LW (2.5) BS03 ZN ? GO:0002181 ... P61927 37410842
    179771 8fkw:SR (2.5) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    179772 8fkw:SU (2.5) BS02 MG ? GO:0003682 ... Q8WTT2 37410842
    179773 8fkw:SV (2.5) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179774 8fkx:L9 (2.59) BS03 MG ? GO:0002181 ... P61313 37410842
    179775 8fkx:LB (2.59) BS02 MG ? GO:0002181 ... Q07020 37410842
    179776 8fkx:LQ (2.59) BS02 MG ? GO:0002181 ... P62910 37410842
    179777 8fkx:LT (2.59) BS02 MG ? GO:0000049 ... P18077 37410842
    179778 8fkx:LW (2.59) BS03 ZN ? GO:0002181 ... P61927 37410842
    179779 8fkx:SA (2.59) BS03 MG ? GO:0002181 ... P36578 37410842
    179780 8fkx:SU (2.59) BS01 MG ? GO:0003682 ... Q8WTT2 37410842
    179781 8fkx:SV (2.59) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179782 8fky:L9 (2.67) BS03 MG ? GO:0002181 ... P61313 37410842
    179783 8fky:LQ (2.67) BS02 MG ? GO:0002181 ... P62910 37410842
    179784 8fky:LR (2.67) BS02 ZN ? GO:0002181 ... P49207 37410842
    179785 8fky:LT (2.67) BS02 MG ? GO:0000049 ... P18077 37410842
    179786 8fky:LW (2.67) BS03 ZN ? GO:0002181 ... P61927 37410842
    179787 8fky:SU (2.67) BS01 MG ? GO:0003682 ... Q8WTT2 37410842
    179788 8fky:SV (2.67) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179789 8fkz:L9 (3.04) BS03 MG ? GO:0002181 ... P61313 37410842
    179790 8fkz:LR (3.04) BS02 ZN ? GO:0002181 ... P49207 37410842
    179791 8fkz:LT (3.04) BS02 MG ? GO:0000049 ... P18077 37410842
    179792 8fkz:LW (3.04) BS03 ZN ? GO:0002181 ... P61927 37410842
    179793 8fkz:LX (3.04) BS02 ZN ? GO:0002181 ... P61513 37410842
    179794 8fkz:SA (3.04) BS03 MG ? GO:0002181 ... P36578 37410842
    179795 8fkz:SR (3.04) BS04 MG ? GO:0000079 ... Q9BZE4 37410842
    179796 8fkz:SV (3.04) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    179797 8fl0:LT (2.91) BS02 MG ? GO:0000049 ... P18077 37410842
    179798 8fl0:NC (2.91) BS03 MG ? GO:0003723 ... Q13823 37410842
    179799 8fl0:SR (2.91) BS03 MG ? GO:0000079 ... Q9BZE4 37410842
    179800 8fl0:SV (2.91) BS02 ZN ? GO:0003735 ... Q9UHA3 37410842
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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