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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    179401 8fc6:1N (2.35) BS03 MG ? GO:0003729 ... P60488 37452045
    179402 8fc6:1P (2.35) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    179403 8fc6:1P (2.35) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    179404 8fc6:1Q (2.35) BS03 MG ? GO:0000049 ... P60489 37452045
    179405 8fc6:1Q (2.35) BS04 MG ? GO:0000049 ... P60489 37452045
    179406 8fc6:1Q (2.35) BS05 MG ? GO:0000049 ... P60489 37452045
    179407 8fc6:1Q (2.35) BS06 MG ? GO:0000049 ... P60489 37452045
    179408 8fc6:1Q (2.35) BS07 MG ? GO:0000049 ... P60489 37452045
    179409 8fc6:1R (2.35) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    179410 8fc6:1R (2.35) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    179411 8fc6:1R (2.35) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    179412 8fc6:1U (2.35) BS02 MG ? GO:0000027 ... P60491 37452045
    179413 8fc6:1U (2.35) BS03 MG ? GO:0000027 ... P60491 37452045
    179414 8fc6:1U (2.35) BS04 MG ? GO:0000027 ... P60491 37452045
    179415 8fc6:1U (2.35) BS05 MG ? GO:0000027 ... P60491 37452045
    179416 8fc6:1U (2.35) BS06 MG ? GO:0000027 ... P60491 37452045
    179417 8fc6:1U (2.35) BS07 MG ? GO:0000027 ... P60491 37452045
    179418 8fc6:1V (2.35) BS02 MG ? GO:0003723 ... P60492 37452045
    179419 8fc6:1V (2.35) BS03 MG ? GO:0003723 ... P60492 37452045
    179420 8fc6:1V (2.35) BS04 MG ? GO:0003723 ... P60492 37452045
    179421 8fc6:1W (2.35) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    179422 8fc6:1W (2.35) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    179423 8fc6:1Y (2.35) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    179424 8fc6:1b (2.35) BS02 MG ? GO:0003735 ... P80371 37452045
    179425 8fc6:1e (2.35) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    179426 8fc6:1k (2.35) BS02 MG ? GO:0003735 ... P80376 37452045
    179427 8fc6:1l (2.35) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    179428 8fc6:1m (2.35) BS02 MG ? GO:0000049 ... P80377 37452045
    179429 8fc6:1n (2.35) BS02 ZN ? GO:0003735 ... P0DOY6 37452045
    179430 8fc6:1t (2.35) BS02 MG ? GO:0003723 ... P80380 37452045
    179431 8fc6:1y (2.35) BS02 MG ? GO:0005515 ... P0AD49 37452045
    179432 8fc6:1y (2.35) BS03 MG ? GO:0005515 ... P0AD49 37452045
    179433 8fc6:24 (2.35) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    179434 8fc6:25 (2.35) BS02 MG ? GO:0003735 ... P80339 37452045
    179435 8fc6:25 (2.35) BS03 MG ? GO:0003735 ... P80339 37452045
    179436 8fc6:25 (2.35) BS04 ZN ? GO:0003735 ... P80339 37452045
    179437 8fc6:26 (2.35) BS02 ZN ? GO:0000049 ... P35871 37452045
    179438 8fc6:27 (2.35) BS02 MG ? GO:0003735 ... P80340 37452045
    179439 8fc6:27 (2.35) BS03 MG ? GO:0003735 ... P80340 37452045
    179440 8fc6:29 (2.35) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    179441 8fc6:2D (2.35) BS03 MG ? GO:0002181 ... P60405 37452045
    179442 8fc6:2D (2.35) BS04 MG ? GO:0002181 ... P60405 37452045
    179443 8fc6:2D (2.35) BS05 MG ? GO:0002181 ... P60405 37452045
    179444 8fc6:2D (2.35) BS06 MG ? GO:0002181 ... P60405 37452045
    179445 8fc6:2D (2.35) BS07 MG ? GO:0002181 ... P60405 37452045
    179446 8fc6:2D (2.35) BS08 MG ? GO:0002181 ... P60405 37452045
    179447 8fc6:2D (2.35) BS09 MG ? GO:0002181 ... P60405 37452045
    179448 8fc6:2E (2.35) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    179449 8fc6:2E (2.35) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    179450 8fc6:2F (2.35) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    179451 8fc6:2F (2.35) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    179452 8fc6:2F (2.35) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    179453 8fc6:2F (2.35) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    179454 8fc6:2G (2.35) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    179455 8fc6:2Q (2.35) BS03 MG ? GO:0000049 ... P60489 37452045
    179456 8fc6:2Q (2.35) BS04 MG ? GO:0000049 ... P60489 37452045
    179457 8fc6:2R (2.35) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    179458 8fc6:2U (2.35) BS02 MG ? GO:0000027 ... P60491 37452045
    179459 8fc6:2V (2.35) BS02 MG ? GO:0003723 ... P60492 37452045
    179460 8fc6:2V (2.35) BS03 MG ? GO:0003723 ... P60492 37452045
    179461 8fc6:2W (2.35) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    179462 8fc6:2W (2.35) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    179463 8fc6:2Y (2.35) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    179464 8fc6:2f (2.35) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    179465 8fc6:2k (2.35) BS02 MG ? GO:0003735 ... P80376 37452045
    179466 8fc6:2l (2.35) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    179467 8fc6:2n (2.35) BS02 ZN ? GO:0003735 ... P0DOY6 37452045
    179468 8fc6:2t (2.35) BS02 MG ? GO:0003723 ... P80380 37452045
    179469 8fc7:E (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179470 8fc7:F (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179471 8fc7:G (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179472 8fc7:H (3.3) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179473 8fc9:E (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179474 8fc9:F (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179475 8fc9:G (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179476 8fc9:H (3.75) BS01 MG 3.6.5.2 GO:0000902 ... P61586 37353484
    179477 8fd7:D (3.1) BS02 CA ? N/A P13806 36973510
    179478 8fd7:K (3.1) BS05 CA ? GO:0005216 ... Q13936 36973510
    179479 8fdb:A (3.06) BS03 MG 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    179480 8fdb:A (3.06) BS04 MG 2.6.1.16 GO:0004360 ... Q12KP2 37145875
    179481 8fei:A (3.0) BS01 FE ? GO:0005576 ... P02789 N/A
    179482 8fei:A (3.0) BS02 FE ? GO:0005576 ... P02789 N/A
    179483 8ffb:A (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179484 8ffb:A (2.25) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179485 8ffb:B (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179486 8ffb:B (2.25) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179487 8ffb:C (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179488 8ffb:C (2.25) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179489 8ffb:D (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179490 8ffb:D (2.25) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179491 8ffb:E (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179492 8ffb:F (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179493 8ffb:G (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179494 8ffb:G (2.25) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179495 8ffb:H (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179496 8ffb:I (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179497 8ffb:I (2.25) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179498 8ffb:I (2.25) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179499 8ffb:J (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179500 8ffb:K (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179501 8ffb:L (2.25) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179502 8ffb:L (2.25) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179503 8ffc:A (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179504 8ffc:A (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179505 8ffc:A (1.85) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179506 8ffc:A (1.85) BS04 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179507 8ffc:B (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179508 8ffc:B (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179509 8ffc:B (1.85) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179510 8ffc:C (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179511 8ffc:C (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179512 8ffc:C (1.85) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179513 8ffc:C (1.85) BS04 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179514 8ffc:D (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179515 8ffc:D (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179516 8ffc:E (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179517 8ffc:E (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179518 8ffc:E (1.85) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179519 8ffc:F (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179520 8ffc:F (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179521 8ffc:G (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179522 8ffc:G (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179523 8ffc:H (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179524 8ffc:H (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179525 8ffc:I (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179526 8ffc:I (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179527 8ffc:J (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179528 8ffc:J (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179529 8ffc:K (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179530 8ffc:K (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179531 8ffc:K (1.85) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179532 8ffc:L (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179533 8ffc:L (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179534 8ffc:M (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179535 8ffc:M (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179536 8ffc:M (1.85) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179537 8ffc:N (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179538 8ffc:N (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179539 8ffc:O (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179540 8ffc:O (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179541 8ffc:P (1.85) BS01 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179542 8ffc:P (1.85) BS02 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179543 8ffc:P (1.85) BS03 FE2 ? GO:0003677 ... Q9I4Z7 36902100
    179544 8ffd:A (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179545 8ffd:B (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179546 8ffd:C (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179547 8ffd:D (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179548 8ffd:E (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179549 8ffd:F (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179550 8ffd:G (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179551 8ffd:H (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179552 8ffd:I (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179553 8ffd:J (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179554 8ffd:K (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179555 8ffd:L (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179556 8ffd:M (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179557 8ffd:N (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179558 8ffd:O (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179559 8ffd:P (2.2) BS01 MN ? GO:0003677 ... Q9I4Z7 36902100
    179560 8ffi:F (2.7) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    179561 8ffi:L (2.7) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    179562 8ffi:N (2.7) BS03 MG ? GO:0003676 ... A0A316E3U6 37494956
    179563 8fft:A (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    179564 8fft:A (2.1) BS02 MG N/A GO:0009058 ... N/A 37497377
    179565 8fft:B (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    179566 8fft:C (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    179567 8fft:D (2.1) BS01 MG N/A GO:0009058 ... N/A 37497377
    179568 8ffu:A (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    179569 8ffu:B (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    179570 8ffu:C (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    179571 8ffu:D (2.04) BS01 MG N/A GO:0009058 ... N/A 37497377
    179572 8ffw:A (3.23) BS02 MG 3.6.4.10 GO:0001764 ... P07900 37945740
    179573 8ffw:B (3.23) BS02 MG 3.6.4.10 GO:0001764 ... P07900 37945740
    179574 8ffz:A (3.8) BS03 ZN ? GO:0000978 ... P39933 37402369
    179575 8ffz:A (3.8) BS04 ZN ? GO:0000978 ... P39933 37402369
    179576 8ffz:A (3.8) BS05 ZN ? GO:0000978 ... P39933 37402369
    179577 8ffz:A (3.8) BS06 ZN ? GO:0000978 ... P39933 37402369
    179578 8ffz:A (3.8) BS07 ZN ? GO:0000978 ... P39933 37402369
    179579 8ffz:A (3.8) BS08 ZN ? GO:0000978 ... P39933 37402369
    179580 8ffz:A (3.8) BS09 ZN ? GO:0000978 ... P39933 37402369
    179581 8ffz:A (3.8) BS10 ZN ? GO:0000978 ... P39933 37402369
    179582 8ffz:A (3.8) BS11 ZN ? GO:0000978 ... P39933 37402369
    179583 8fg3:A (1.49) BS02 MG 3.6.5.2 GO:0003924 ... P01112 37615343
    179584 8fg4:A (1.85) BS02 CA 3.6.5.2 GO:0003924 ... P01112 37615343
    179585 8fg4:A (1.85) BS03 MG 3.6.5.2 GO:0003924 ... P01112 37615343
    179586 8fg8:A (2.35) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37285134
    179587 8fg8:B (2.35) BS01 CA 2.4.1.5 GO:0009250 ... P08987 37285134
    179588 8fg9:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179589 8fg9:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179590 8fga:A (1.8947) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179591 8fga:B (1.8947) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179592 8fgb:A (1.91) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179593 8fgb:B (1.91) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179594 8fgc:A (1.779) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179595 8fgc:B (1.779) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179596 8fgd:A (1.776) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179597 8fge:A (1.89) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 37433128
    179598 8fgf:A (1.83) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179599 8fgf:B (1.83) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    179600 8fgg:A (1.859) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 37433128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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