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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    179001 8fc2:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    179002 8fc2:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    179003 8fc2:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    179004 8fc2:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    179005 8fc2:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    179006 8fc2:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    179007 8fc2:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    179008 8fc2:2R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    179009 8fc2:2V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    179010 8fc2:2V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    179011 8fc2:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    179012 8fc2:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    179013 8fc2:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    179014 8fc2:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    179015 8fc2:2k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    179016 8fc2:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    179017 8fc2:2n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 37452045
    179018 8fc3:10 (2.6) BS03 MG ? GO:0003735 ... P60493 37452045
    179019 8fc3:10 (2.6) BS04 MG ? GO:0003735 ... P60493 37452045
    179020 8fc3:10 (2.6) BS05 MG ? GO:0003735 ... P60493 37452045
    179021 8fc3:11 (2.6) BS02 MG ? GO:0003735 ... P60494 37452045
    179022 8fc3:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    179023 8fc3:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 37452045
    179024 8fc3:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    179025 8fc3:15 (2.6) BS02 MG ? GO:0003735 ... P80339 37452045
    179026 8fc3:15 (2.6) BS03 MG ? GO:0003735 ... P80339 37452045
    179027 8fc3:15 (2.6) BS04 ZN ? GO:0003735 ... P80339 37452045
    179028 8fc3:16 (2.6) BS02 ZN ? GO:0000049 ... P35871 37452045
    179029 8fc3:17 (2.6) BS02 MG ? GO:0003735 ... P80340 37452045
    179030 8fc3:17 (2.6) BS03 MG ? GO:0003735 ... P80340 37452045
    179031 8fc3:17 (2.6) BS04 MG ? GO:0003735 ... P80340 37452045
    179032 8fc3:17 (2.6) BS05 MG ? GO:0003735 ... P80340 37452045
    179033 8fc3:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    179034 8fc3:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 37452045
    179035 8fc3:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    179036 8fc3:1D (2.6) BS03 MG ? GO:0002181 ... P60405 37452045
    179037 8fc3:1D (2.6) BS04 MG ? GO:0002181 ... P60405 37452045
    179038 8fc3:1D (2.6) BS05 MG ? GO:0002181 ... P60405 37452045
    179039 8fc3:1D (2.6) BS06 MG ? GO:0002181 ... P60405 37452045
    179040 8fc3:1D (2.6) BS07 MG ? GO:0002181 ... P60405 37452045
    179041 8fc3:1D (2.6) BS08 MG ? GO:0002181 ... P60405 37452045
    179042 8fc3:1D (2.6) BS09 MG ? GO:0002181 ... P60405 37452045
    179043 8fc3:1D (2.6) BS10 MG ? GO:0002181 ... P60405 37452045
    179044 8fc3:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    179045 8fc3:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    179046 8fc3:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    179047 8fc3:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    179048 8fc3:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    179049 8fc3:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    179050 8fc3:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    179051 8fc3:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    179052 8fc3:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    179053 8fc3:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    179054 8fc3:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    179055 8fc3:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    179056 8fc3:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    179057 8fc3:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    179058 8fc3:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    179059 8fc3:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    179060 8fc3:1G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    179061 8fc3:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    179062 8fc3:1N (2.6) BS02 MG ? GO:0003729 ... P60488 37452045
    179063 8fc3:1N (2.6) BS03 MG ? GO:0003729 ... P60488 37452045
    179064 8fc3:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    179065 8fc3:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    179066 8fc3:1Q (2.6) BS03 MG ? GO:0000049 ... P60489 37452045
    179067 8fc3:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 37452045
    179068 8fc3:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 37452045
    179069 8fc3:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 37452045
    179070 8fc3:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    179071 8fc3:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    179072 8fc3:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    179073 8fc3:1R (2.6) BS05 MG ? GO:0003735 ... Q9Z9H5 37452045
    179074 8fc3:1T (2.6) BS03 MG ? GO:0003735 ... P60490 37452045
    179075 8fc3:1U (2.6) BS02 MG ? GO:0000027 ... P60491 37452045
    179076 8fc3:1U (2.6) BS03 MG ? GO:0000027 ... P60491 37452045
    179077 8fc3:1U (2.6) BS04 MG ? GO:0000027 ... P60491 37452045
    179078 8fc3:1U (2.6) BS05 MG ? GO:0000027 ... P60491 37452045
    179079 8fc3:1U (2.6) BS06 MG ? GO:0000027 ... P60491 37452045
    179080 8fc3:1U (2.6) BS07 MG ? GO:0000027 ... P60491 37452045
    179081 8fc3:1V (2.6) BS02 MG ? GO:0003723 ... P60492 37452045
    179082 8fc3:1V (2.6) BS03 MG ? GO:0003723 ... P60492 37452045
    179083 8fc3:1V (2.6) BS04 MG ? GO:0003723 ... P60492 37452045
    179084 8fc3:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    179085 8fc3:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    179086 8fc3:1b (2.6) BS02 MG ? GO:0003735 ... P80371 37452045
    179087 8fc3:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    179088 8fc3:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    179089 8fc3:1k (2.6) BS02 MG ? GO:0003735 ... P80376 37452045
    179090 8fc3:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    179091 8fc3:1m (2.6) BS02 MG ? GO:0000049 ... P80377 37452045
    179092 8fc3:1n (2.6) BS02 MG ? GO:0003735 ... P0DOY6 37452045
    179093 8fc3:1n (2.6) BS03 ZN ? GO:0003735 ... P0DOY6 37452045
    179094 8fc3:1t (2.6) BS02 MG ? GO:0003723 ... P80380 37452045
    179095 8fc3:1y (2.6) BS02 MG ? GO:0005515 ... P0AD49 37452045
    179096 8fc3:1y (2.6) BS03 MG ? GO:0005515 ... P0AD49 37452045
    179097 8fc3:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    179098 8fc3:25 (2.6) BS02 MG ? GO:0003735 ... P80339 37452045
    179099 8fc3:25 (2.6) BS03 MG ? GO:0003735 ... P80339 37452045
    179100 8fc3:25 (2.6) BS04 ZN ? GO:0003735 ... P80339 37452045
    179101 8fc3:26 (2.6) BS02 MG ? GO:0000049 ... P35871 37452045
    179102 8fc3:26 (2.6) BS03 ZN ? GO:0000049 ... P35871 37452045
    179103 8fc3:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    179104 8fc3:2D (2.6) BS03 MG ? GO:0002181 ... P60405 37452045
    179105 8fc3:2D (2.6) BS04 MG ? GO:0002181 ... P60405 37452045
    179106 8fc3:2D (2.6) BS05 MG ? GO:0002181 ... P60405 37452045
    179107 8fc3:2D (2.6) BS06 MG ? GO:0002181 ... P60405 37452045
    179108 8fc3:2D (2.6) BS07 MG ? GO:0002181 ... P60405 37452045
    179109 8fc3:2D (2.6) BS08 MG ? GO:0002181 ... P60405 37452045
    179110 8fc3:2D (2.6) BS09 MG ? GO:0002181 ... P60405 37452045
    179111 8fc3:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    179112 8fc3:2E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    179113 8fc3:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    179114 8fc3:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    179115 8fc3:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    179116 8fc3:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    179117 8fc3:2G (2.6) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    179118 8fc3:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    179119 8fc3:2G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 37452045
    179120 8fc3:2I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 37452045
    179121 8fc3:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 37452045
    179122 8fc3:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    179123 8fc3:2V (2.6) BS02 MG ? GO:0003723 ... P60492 37452045
    179124 8fc3:2V (2.6) BS03 MG ? GO:0003723 ... P60492 37452045
    179125 8fc3:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    179126 8fc3:2W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    179127 8fc3:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    179128 8fc3:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    179129 8fc3:2k (2.6) BS02 MG ? GO:0003735 ... P80376 37452045
    179130 8fc3:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    179131 8fc3:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 37452045
    179132 8fc4:10 (2.45) BS03 MG ? GO:0003735 ... P60493 37452045
    179133 8fc4:10 (2.45) BS04 MG ? GO:0003735 ... P60493 37452045
    179134 8fc4:13 (2.45) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    179135 8fc4:13 (2.45) BS04 MG ? GO:0003735 ... Q5SHQ6 37452045
    179136 8fc4:14 (2.45) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    179137 8fc4:15 (2.45) BS02 MG ? GO:0003735 ... P80339 37452045
    179138 8fc4:15 (2.45) BS03 MG ? GO:0003735 ... P80339 37452045
    179139 8fc4:15 (2.45) BS04 MG ? GO:0003735 ... P80339 37452045
    179140 8fc4:15 (2.45) BS05 ZN ? GO:0003735 ... P80339 37452045
    179141 8fc4:16 (2.45) BS02 ZN ? GO:0000049 ... P35871 37452045
    179142 8fc4:17 (2.45) BS02 MG ? GO:0003735 ... P80340 37452045
    179143 8fc4:17 (2.45) BS03 MG ? GO:0003735 ... P80340 37452045
    179144 8fc4:17 (2.45) BS04 MG ? GO:0003735 ... P80340 37452045
    179145 8fc4:17 (2.45) BS05 MG ? GO:0003735 ... P80340 37452045
    179146 8fc4:18 (2.45) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    179147 8fc4:19 (2.45) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    179148 8fc4:1D (2.45) BS03 MG ? GO:0002181 ... P60405 37452045
    179149 8fc4:1D (2.45) BS04 MG ? GO:0002181 ... P60405 37452045
    179150 8fc4:1D (2.45) BS05 MG ? GO:0002181 ... P60405 37452045
    179151 8fc4:1D (2.45) BS06 MG ? GO:0002181 ... P60405 37452045
    179152 8fc4:1D (2.45) BS07 MG ? GO:0002181 ... P60405 37452045
    179153 8fc4:1D (2.45) BS08 MG ? GO:0002181 ... P60405 37452045
    179154 8fc4:1D (2.45) BS09 MG ? GO:0002181 ... P60405 37452045
    179155 8fc4:1D (2.45) BS10 MG ? GO:0002181 ... P60405 37452045
    179156 8fc4:1D (2.45) BS11 MG ? GO:0002181 ... P60405 37452045
    179157 8fc4:1D (2.45) BS12 MG ? GO:0002181 ... P60405 37452045
    179158 8fc4:1D (2.45) BS13 MG ? GO:0002181 ... P60405 37452045
    179159 8fc4:1D (2.45) BS14 MG ? GO:0002181 ... P60405 37452045
    179160 8fc4:1E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    179161 8fc4:1E (2.45) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    179162 8fc4:1E (2.45) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    179163 8fc4:1E (2.45) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    179164 8fc4:1F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    179165 8fc4:1F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    179166 8fc4:1F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    179167 8fc4:1F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    179168 8fc4:1F (2.45) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    179169 8fc4:1F (2.45) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    179170 8fc4:1F (2.45) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    179171 8fc4:1F (2.45) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    179172 8fc4:1F (2.45) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    179173 8fc4:1F (2.45) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    179174 8fc4:1F (2.45) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    179175 8fc4:1F (2.45) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    179176 8fc4:1F (2.45) BS14 MG ? GO:0003735 ... Q5SHN9 37452045
    179177 8fc4:1F (2.45) BS15 MG ? GO:0003735 ... Q5SHN9 37452045
    179178 8fc4:1G (2.45) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    179179 8fc4:1G (2.45) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    179180 8fc4:1N (2.45) BS02 MG ? GO:0003729 ... P60488 37452045
    179181 8fc4:1N (2.45) BS03 MG ? GO:0003729 ... P60488 37452045
    179182 8fc4:1P (2.45) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    179183 8fc4:1P (2.45) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    179184 8fc4:1P (2.45) BS04 MG ? GO:0003735 ... Q5SHQ7 37452045
    179185 8fc4:1Q (2.45) BS03 MG ? GO:0000049 ... P60489 37452045
    179186 8fc4:1Q (2.45) BS04 MG ? GO:0000049 ... P60489 37452045
    179187 8fc4:1Q (2.45) BS05 MG ? GO:0000049 ... P60489 37452045
    179188 8fc4:1Q (2.45) BS06 MG ? GO:0000049 ... P60489 37452045
    179189 8fc4:1Q (2.45) BS07 MG ? GO:0000049 ... P60489 37452045
    179190 8fc4:1R (2.45) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    179191 8fc4:1R (2.45) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    179192 8fc4:1R (2.45) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    179193 8fc4:1R (2.45) BS05 MG ? GO:0003735 ... Q9Z9H5 37452045
    179194 8fc4:1U (2.45) BS02 MG ? GO:0000027 ... P60491 37452045
    179195 8fc4:1U (2.45) BS03 MG ? GO:0000027 ... P60491 37452045
    179196 8fc4:1U (2.45) BS04 MG ? GO:0000027 ... P60491 37452045
    179197 8fc4:1U (2.45) BS05 MG ? GO:0000027 ... P60491 37452045
    179198 8fc4:1U (2.45) BS06 MG ? GO:0000027 ... P60491 37452045
    179199 8fc4:1U (2.45) BS07 MG ? GO:0000027 ... P60491 37452045
    179200 8fc4:1V (2.45) BS02 MG ? GO:0003723 ... P60492 37452045
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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