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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    178801 8fc1:15 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    178802 8fc1:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 37452045
    178803 8fc1:16 (2.5) BS02 ZN ? GO:0000049 ... P35871 37452045
    178804 8fc1:17 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    178805 8fc1:17 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    178806 8fc1:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    178807 8fc1:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 37452045
    178808 8fc1:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    178809 8fc1:1D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    178810 8fc1:1D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    178811 8fc1:1D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    178812 8fc1:1D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    178813 8fc1:1D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    178814 8fc1:1D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    178815 8fc1:1D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    178816 8fc1:1D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    178817 8fc1:1D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    178818 8fc1:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    178819 8fc1:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    178820 8fc1:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    178821 8fc1:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    178822 8fc1:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    178823 8fc1:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    178824 8fc1:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    178825 8fc1:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    178826 8fc1:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    178827 8fc1:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    178828 8fc1:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    178829 8fc1:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    178830 8fc1:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    178831 8fc1:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    178832 8fc1:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    178833 8fc1:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    178834 8fc1:1F (2.5) BS14 MG ? GO:0003735 ... Q5SHN9 37452045
    178835 8fc1:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    178836 8fc1:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    178837 8fc1:1N (2.5) BS02 MG ? GO:0003729 ... P60488 37452045
    178838 8fc1:1N (2.5) BS03 MG ? GO:0003729 ... P60488 37452045
    178839 8fc1:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 37452045
    178840 8fc1:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    178841 8fc1:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    178842 8fc1:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    178843 8fc1:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    178844 8fc1:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 37452045
    178845 8fc1:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 37452045
    178846 8fc1:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    178847 8fc1:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    178848 8fc1:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    178849 8fc1:1R (2.5) BS05 MG ? GO:0003735 ... Q9Z9H5 37452045
    178850 8fc1:1R (2.5) BS06 MG ? GO:0003735 ... Q9Z9H5 37452045
    178851 8fc1:1T (2.5) BS03 MG ? GO:0003735 ... P60490 37452045
    178852 8fc1:1U (2.5) BS02 MG ? GO:0000027 ... P60491 37452045
    178853 8fc1:1U (2.5) BS03 MG ? GO:0000027 ... P60491 37452045
    178854 8fc1:1U (2.5) BS04 MG ? GO:0000027 ... P60491 37452045
    178855 8fc1:1U (2.5) BS05 MG ? GO:0000027 ... P60491 37452045
    178856 8fc1:1U (2.5) BS06 MG ? GO:0000027 ... P60491 37452045
    178857 8fc1:1V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    178858 8fc1:1V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    178859 8fc1:1V (2.5) BS04 MG ? GO:0003723 ... P60492 37452045
    178860 8fc1:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    178861 8fc1:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    178862 8fc1:1b (2.5) BS02 MG ? GO:0003735 ... P80371 37452045
    178863 8fc1:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    178864 8fc1:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    178865 8fc1:1k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    178866 8fc1:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    178867 8fc1:1m (2.5) BS03 MG ? GO:0000049 ... P80377 37452045
    178868 8fc1:1n (2.5) BS02 MG ? GO:0003735 ... P0DOY6 37452045
    178869 8fc1:1n (2.5) BS03 ZN ? GO:0003735 ... P0DOY6 37452045
    178870 8fc1:1t (2.5) BS02 MG ? GO:0003723 ... P80380 37452045
    178871 8fc1:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 37452045
    178872 8fc1:20 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    178873 8fc1:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    178874 8fc1:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    178875 8fc1:25 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    178876 8fc1:25 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    178877 8fc1:25 (2.5) BS04 ZN ? GO:0003735 ... P80339 37452045
    178878 8fc1:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 37452045
    178879 8fc1:27 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    178880 8fc1:27 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    178881 8fc1:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    178882 8fc1:2D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    178883 8fc1:2D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    178884 8fc1:2D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    178885 8fc1:2D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    178886 8fc1:2D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    178887 8fc1:2D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    178888 8fc1:2D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    178889 8fc1:2D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    178890 8fc1:2D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    178891 8fc1:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    178892 8fc1:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    178893 8fc1:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    178894 8fc1:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    178895 8fc1:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    178896 8fc1:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    178897 8fc1:2Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    178898 8fc1:2Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    178899 8fc1:2V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    178900 8fc1:2V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    178901 8fc1:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 37452045
    178902 8fc1:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 37452045
    178903 8fc1:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    178904 8fc1:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    178905 8fc1:2j (2.5) BS02 MG ? GO:0000049 ... Q5SHN7 37452045
    178906 8fc1:2k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    178907 8fc1:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    178908 8fc1:2n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 37452045
    178909 8fc1:2t (2.5) BS02 MG ? GO:0003723 ... P80380 37452045
    178910 8fc2:10 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    178911 8fc2:10 (2.5) BS04 MG ? GO:0003735 ... P60493 37452045
    178912 8fc2:11 (2.5) BS02 MG ? GO:0003735 ... P60494 37452045
    178913 8fc2:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 37452045
    178914 8fc2:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 37452045
    178915 8fc2:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    178916 8fc2:15 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    178917 8fc2:15 (2.5) BS03 MG ? GO:0003735 ... P80339 37452045
    178918 8fc2:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 37452045
    178919 8fc2:16 (2.5) BS02 ZN ? GO:0000049 ... P35871 37452045
    178920 8fc2:17 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    178921 8fc2:17 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    178922 8fc2:17 (2.5) BS04 MG ? GO:0003735 ... P80340 37452045
    178923 8fc2:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 37452045
    178924 8fc2:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 37452045
    178925 8fc2:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    178926 8fc2:1D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    178927 8fc2:1D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    178928 8fc2:1D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    178929 8fc2:1D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    178930 8fc2:1D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    178931 8fc2:1D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    178932 8fc2:1D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    178933 8fc2:1D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    178934 8fc2:1D (2.5) BS11 MG ? GO:0002181 ... P60405 37452045
    178935 8fc2:1D (2.5) BS12 MG ? GO:0002181 ... P60405 37452045
    178936 8fc2:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 37452045
    178937 8fc2:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 37452045
    178938 8fc2:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 37452045
    178939 8fc2:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 37452045
    178940 8fc2:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 37452045
    178941 8fc2:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 37452045
    178942 8fc2:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 37452045
    178943 8fc2:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 37452045
    178944 8fc2:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 37452045
    178945 8fc2:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 37452045
    178946 8fc2:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 37452045
    178947 8fc2:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 37452045
    178948 8fc2:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 37452045
    178949 8fc2:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 37452045
    178950 8fc2:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 37452045
    178951 8fc2:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 37452045
    178952 8fc2:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 37452045
    178953 8fc2:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 37452045
    178954 8fc2:1N (2.5) BS02 MG ? GO:0003729 ... P60488 37452045
    178955 8fc2:1N (2.5) BS03 MG ? GO:0003729 ... P60488 37452045
    178956 8fc2:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 37452045
    178957 8fc2:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 37452045
    178958 8fc2:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 37452045
    178959 8fc2:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 37452045
    178960 8fc2:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 37452045
    178961 8fc2:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 37452045
    178962 8fc2:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 37452045
    178963 8fc2:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 37452045
    178964 8fc2:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 37452045
    178965 8fc2:1U (2.5) BS02 MG ? GO:0000027 ... P60491 37452045
    178966 8fc2:1U (2.5) BS03 MG ? GO:0000027 ... P60491 37452045
    178967 8fc2:1U (2.5) BS04 MG ? GO:0000027 ... P60491 37452045
    178968 8fc2:1U (2.5) BS05 MG ? GO:0000027 ... P60491 37452045
    178969 8fc2:1U (2.5) BS06 MG ? GO:0000027 ... P60491 37452045
    178970 8fc2:1U (2.5) BS07 MG ? GO:0000027 ... P60491 37452045
    178971 8fc2:1V (2.5) BS02 MG ? GO:0003723 ... P60492 37452045
    178972 8fc2:1V (2.5) BS03 MG ? GO:0003723 ... P60492 37452045
    178973 8fc2:1V (2.5) BS04 MG ? GO:0003723 ... P60492 37452045
    178974 8fc2:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 37452045
    178975 8fc2:1b (2.5) BS02 MG ? GO:0003735 ... P80371 37452045
    178976 8fc2:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 37452045
    178977 8fc2:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 37452045
    178978 8fc2:1k (2.5) BS02 MG ? GO:0003735 ... P80376 37452045
    178979 8fc2:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 37452045
    178980 8fc2:1m (2.5) BS03 MG ? GO:0000049 ... P80377 37452045
    178981 8fc2:1n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 37452045
    178982 8fc2:1t (2.5) BS02 MG ? GO:0003723 ... P80380 37452045
    178983 8fc2:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 37452045
    178984 8fc2:1y (2.5) BS03 MG ? GO:0005515 ... P0AD49 37452045
    178985 8fc2:20 (2.5) BS03 MG ? GO:0003735 ... P60493 37452045
    178986 8fc2:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 37452045
    178987 8fc2:25 (2.5) BS02 MG ? GO:0003735 ... P80339 37452045
    178988 8fc2:25 (2.5) BS03 ZN ? GO:0003735 ... P80339 37452045
    178989 8fc2:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 37452045
    178990 8fc2:27 (2.5) BS02 MG ? GO:0003735 ... P80340 37452045
    178991 8fc2:27 (2.5) BS03 MG ? GO:0003735 ... P80340 37452045
    178992 8fc2:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 37452045
    178993 8fc2:2D (2.5) BS03 MG ? GO:0002181 ... P60405 37452045
    178994 8fc2:2D (2.5) BS04 MG ? GO:0002181 ... P60405 37452045
    178995 8fc2:2D (2.5) BS05 MG ? GO:0002181 ... P60405 37452045
    178996 8fc2:2D (2.5) BS06 MG ? GO:0002181 ... P60405 37452045
    178997 8fc2:2D (2.5) BS07 MG ? GO:0002181 ... P60405 37452045
    178998 8fc2:2D (2.5) BS08 MG ? GO:0002181 ... P60405 37452045
    178999 8fc2:2D (2.5) BS09 MG ? GO:0002181 ... P60405 37452045
    179000 8fc2:2D (2.5) BS10 MG ? GO:0002181 ... P60405 37452045
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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