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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    178201 8eot:D (3.3) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178202 8ep4:A (1.94) BS01 CA ? GO:0004553 ... B5CYA6 N/A
    178203 8ep4:B (1.94) BS01 CA ? GO:0004553 ... B5CYA6 N/A
    178204 8ep4:B (1.94) BS02 CA ? GO:0004553 ... B5CYA6 N/A
    178205 8ep4:C (1.94) BS01 CA ? GO:0004553 ... B5CYA6 N/A
    178206 8epc:B (2.51) BS01 CA N/A N/A P00740 38985762
    178207 8eph:A (1.88) BS02 CA N/A N/A P00740 38985762
    178208 8eph:B (1.88) BS01 CA N/A N/A P00740 38985762
    178209 8eph:C (1.88) BS02 CA N/A N/A P00740 38985762
    178210 8eph:D (1.88) BS01 CA N/A N/A P00740 38985762
    178211 8epk:B (2.65) BS03 CA N/A N/A P00740 38985762
    178212 8epk:D (2.65) BS03 CA N/A N/A P00740 38985762
    178213 8epl:A (3.1) BS01 CA ? GO:0005216 ... Q15878 36446785
    178214 8epl:C (3.1) BS01 CA ? N/A P54289 36446785
    178215 8epm:A (3.1) BS01 CA ? GO:0005216 ... Q15878 36446785
    178216 8epm:C (3.1) BS01 CA ? N/A P54289 36446785
    178217 8ept:A (-1.00) BS01 ZN 2.3.2.26 N/A Q05086 N/A
    178218 8epv:A (2.19) BS01 ZN ? GO:0005576 ... E5D2Z5 36960093
    178219 8epv:A (2.19) BS02 ZN ? GO:0005576 ... E5D2Z5 36960093
    178220 8epv:A (2.19) BS03 ZN ? GO:0005576 ... E5D2Z5 36960093
    178221 8epw:A (2.0) BS02 MG 3.6.5.2 GO:0003924 ... P01116 37268708
    178222 8epx:D (3.15) BS03 CA ? N/A A0A2N8KYF9 36987874
    178223 8epz:A (2.6) BS02 MN ? GO:0016829 ... A0A4R3LQ44 N/A
    178224 8epz:B (2.6) BS02 MN ? GO:0016829 ... A0A4R3LQ44 N/A
    178225 8eqa:A (2.55) BS01 ZN N/A N/A N/A 37506693
    178226 8eqa:B (2.55) BS01 ZN N/A N/A N/A 37506693
    178227 8eqa:B (2.55) BS02 ZN N/A N/A N/A 37506693
    178228 8eqa:H (2.55) BS01 ZN N/A N/A N/A 37506693
    178229 8eqa:L (2.55) BS01 ZN N/A N/A N/A 37506693
    178230 8eqi:A (2.0) BS03 ZN ? N/A F8W4B7 37027789
    178231 8eqi:B (2.0) BS02 ZN ? N/A F8W4B7 37027789
    178232 8eqm:A (2.6) BS02 FE2 ? GO:0009055 ... B4WKH9 36549647
    178233 8eqm:D (2.6) BS01 FE2 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    178234 8eqm:a (2.6) BS02 FE2 ? GO:0009055 ... B4WKH9 36549647
    178235 8eqm:d (2.6) BS01 FE2 1.10.3.9 GO:0005506 ... B4WKI3 36549647
    178236 8eqo:B (1.62) BS01 CU ? GO:0003756 ... P0AEG4 36829940
    178237 8ero:A (3.2) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178238 8ero:A (3.2) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178239 8ero:B (3.2) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178240 8ero:B (3.2) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178241 8erp:A (3.7) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178242 8erp:A (3.7) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178243 8erp:B (3.7) BS01 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178244 8erp:B (3.7) BS02 MG 2.7.8.2 GO:0000139 ... Q4KLV1 37179328
    178245 8esq:j (2.8) BS03 ZN ? GO:0002181 ... P05733 36423630
    178246 8esr:j (3.2) BS03 ZN ? GO:0002181 ... P05733 36423630
    178247 8est:E (1.78) BS01 CA 3.4.21.36 GO:0004252 ... P00772 2337582
    178248 8esv:A (3.3) BS01 CA 3.4.24.81 GO:0004222 ... O14672 37516108
    178249 8esv:A (3.3) BS02 ZN 3.4.24.81 GO:0004222 ... O14672 37516108
    178250 8esw:S6 (3.3) BS01 ZN ? GO:0005739 ... Q9VMU0 36952377
    178251 8esz:S6 (3.4) BS01 ZN ? GO:0005739 ... Q9VMU0 36952377
    178252 8et4:A (2.95) BS01 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    178253 8et4:A (2.95) BS05 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    178254 8et4:A (2.95) BS06 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    178255 8et5:A (2.94) BS01 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    178256 8et5:A (2.94) BS05 MG 2.2.1.6 GO:0000287 ... P17597 36943718
    178257 8etb:A (1.63) BS01 ZN ? GO:0005515 ... P0AEX9 37035699
    178258 8etc:j (3.1) BS03 ZN ? GO:0002181 ... P05733 36423630
    178259 8etd:B (2.78) BS01 MG ? GO:0000935 ... Q09914 36358328
    178260 8etg:j (3.4) BS03 ZN ? GO:0002181 ... P05733 36423630
    178261 8eth:j (3.8) BS03 ZN ? GO:0002181 ... P05733 36423630
    178262 8eti:j (3.7) BS03 ZN ? GO:0002181 ... P05733 36423630
    178263 8etj:j (3.2) BS03 ZN ? GO:0002181 ... P05733 36423630
    178264 8eua:A (3.1) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 36977673
    178265 8eub:AG (2.52) BS03 MG ? GO:0000470 ... P17076 37595043
    178266 8eub:AN (2.52) BS03 MG ? GO:0002181 ... P05748 37595043
    178267 8eub:AN (2.52) BS04 MG ? GO:0002181 ... P05748 37595043
    178268 8eub:AO (2.52) BS02 MG ? GO:0000470 ... P26784 37595043
    178269 8eub:AO (2.52) BS03 MG ? GO:0000470 ... P26784 37595043
    178270 8eub:Ae (2.52) BS02 MG ? GO:0003735 ... N/A 37595043
    178271 8eub:Af (2.52) BS02 MG ? GO:0000027 ... P05744 37595043
    178272 8eub:Af (2.52) BS03 MG ? GO:0000027 ... P05744 37595043
    178273 8eub:Ah (2.52) BS03 MG ? GO:0000463 ... P0CX84 37595043
    178274 8eub:Aj (2.52) BS03 MG ? GO:0000448 ... P49166 37595043
    178275 8eub:Ao (2.52) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    178276 8eug:j (2.8) BS03 ZN ? GO:0002181 ... P05733 36423630
    178277 8eui:j (3.1) BS03 ZN ? GO:0002181 ... P05733 36423630
    178278 8eup:j (3.1) BS03 ZN ? GO:0002181 ... P05733 36423630
    178279 8euy:j (3.0) BS03 ZN ? GO:0002181 ... P05733 36423630
    178280 8ev3:j (3.0) BS03 ZN ? GO:0002181 ... P05733 36423630
    178281 8ev6:14 (2.946) BS02 ZN ? GO:0003735 ... Q5SJE1 37537169
    178282 8ev6:15 (2.946) BS02 ZN ? GO:0003735 ... P80339 37537169
    178283 8ev6:16 (2.946) BS02 ZN ? GO:0000049 ... P35871 37537169
    178284 8ev6:18 (2.946) BS02 MG ? GO:0003735 ... Q5SKU1 37537169
    178285 8ev6:18 (2.946) BS03 MG ? GO:0003735 ... Q5SKU1 37537169
    178286 8ev6:18 (2.946) BS04 MG ? GO:0003735 ... Q5SKU1 37537169
    178287 8ev6:19 (2.946) BS02 ZN ? GO:0003735 ... Q5SHR2 37537169
    178288 8ev6:1D (2.946) BS03 MG ? GO:0002181 ... P60405 37537169
    178289 8ev6:1D (2.946) BS04 MG ? GO:0002181 ... P60405 37537169
    178290 8ev6:1D (2.946) BS05 MG ? GO:0002181 ... P60405 37537169
    178291 8ev6:1D (2.946) BS06 MG ? GO:0002181 ... P60405 37537169
    178292 8ev6:1E (2.946) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    178293 8ev6:1E (2.946) BS03 MG ? GO:0003735 ... Q5SHN8 37537169
    178294 8ev6:1F (2.946) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    178295 8ev6:1F (2.946) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    178296 8ev6:1F (2.946) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    178297 8ev6:1G (2.946) BS04 MG ? GO:0000049 ... Q5SHQ0 37537169
    178298 8ev6:1G (2.946) BS05 MG ? GO:0000049 ... Q5SHQ0 37537169
    178299 8ev6:1N (2.946) BS02 MG ? GO:0003729 ... P60488 37537169
    178300 8ev6:1Q (2.946) BS04 MG ? GO:0000049 ... P60489 37537169
    178301 8ev6:1Q (2.946) BS05 MG ? GO:0000049 ... P60489 37537169
    178302 8ev6:1U (2.946) BS02 MG ? GO:0000027 ... P60491 37537169
    178303 8ev6:1V (2.946) BS02 MG ? GO:0003723 ... P60492 37537169
    178304 8ev6:1W (2.946) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    178305 8ev6:1Y (2.946) BS02 ZN ? GO:0003723 ... Q5SHP9 37537169
    178306 8ev6:1d (2.946) BS02 MG ? GO:0003723 ... P80373 37537169
    178307 8ev6:1e (2.946) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    178308 8ev6:1f (2.946) BS02 MG ? GO:0003735 ... Q5SLP8 37537169
    178309 8ev6:1f (2.946) BS03 MG ? GO:0003735 ... Q5SLP8 37537169
    178310 8ev6:1k (2.946) BS02 MG ? GO:0003735 ... P80376 37537169
    178311 8ev6:1l (2.946) BS02 MG ? GO:0000049 ... Q5SHN3 37537169
    178312 8ev6:1l (2.946) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    178313 8ev6:1l (2.946) BS04 MG ? GO:0000049 ... Q5SHN3 37537169
    178314 8ev6:1m (2.946) BS04 MG ? GO:0000049 ... P80377 37537169
    178315 8ev6:1n (2.946) BS02 ZN ? GO:0003735 ... P0DOY6 37537169
    178316 8ev6:1p (2.946) BS02 MG ? GO:0003735 ... Q5SJH3 37537169
    178317 8ev6:24 (2.946) BS02 ZN ? GO:0003735 ... Q5SJE1 37537169
    178318 8ev6:25 (2.946) BS02 ZN ? GO:0003735 ... P80339 37537169
    178319 8ev6:26 (2.946) BS02 ZN ? GO:0000049 ... P35871 37537169
    178320 8ev6:29 (2.946) BS02 ZN ? GO:0003735 ... Q5SHR2 37537169
    178321 8ev6:2D (2.946) BS03 MG ? GO:0002181 ... P60405 37537169
    178322 8ev6:2D (2.946) BS04 MG ? GO:0002181 ... P60405 37537169
    178323 8ev6:2D (2.946) BS05 MG ? GO:0002181 ... P60405 37537169
    178324 8ev6:2E (2.946) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    178325 8ev6:2F (2.946) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    178326 8ev6:2F (2.946) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    178327 8ev6:2F (2.946) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    178328 8ev6:2O (2.946) BS03 MG ? GO:0003735 ... Q5SHP8 37537169
    178329 8ev6:2P (2.946) BS02 MG ? GO:0003735 ... Q5SHQ7 37537169
    178330 8ev6:2Q (2.946) BS04 MG ? GO:0000049 ... P60489 37537169
    178331 8ev6:2W (2.946) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    178332 8ev6:2Y (2.946) BS02 ZN ? GO:0003723 ... Q5SHP9 37537169
    178333 8ev6:2e (2.946) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    178334 8ev6:2g (2.946) BS03 MG ? GO:0000028 ... P17291 37537169
    178335 8ev6:2n (2.946) BS02 ZN ? GO:0003735 ... P0DOY6 37537169
    178336 8ev6:2t (2.946) BS02 MG ? GO:0003723 ... P80380 37537169
    178337 8ev7:14 (2.89) BS02 ZN ? GO:0003735 ... Q5SJE1 37537169
    178338 8ev7:15 (2.89) BS02 ZN ? GO:0003735 ... P80339 37537169
    178339 8ev7:16 (2.89) BS02 ZN ? GO:0000049 ... P35871 37537169
    178340 8ev7:18 (2.89) BS02 MG ? GO:0003735 ... Q5SKU1 37537169
    178341 8ev7:19 (2.89) BS02 MG ? GO:0003735 ... Q5SHR2 37537169
    178342 8ev7:19 (2.89) BS03 ZN ? GO:0003735 ... Q5SHR2 37537169
    178343 8ev7:1D (2.89) BS03 MG ? GO:0002181 ... P60405 37537169
    178344 8ev7:1D (2.89) BS04 MG ? GO:0002181 ... P60405 37537169
    178345 8ev7:1D (2.89) BS05 MG ? GO:0002181 ... P60405 37537169
    178346 8ev7:1E (2.89) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    178347 8ev7:1G (2.89) BS04 MG ? GO:0000049 ... Q5SHQ0 37537169
    178348 8ev7:1G (2.89) BS05 MG ? GO:0000049 ... Q5SHQ0 37537169
    178349 8ev7:1Q (2.89) BS04 MG ? GO:0000049 ... P60489 37537169
    178350 8ev7:1T (2.89) BS03 MG ? GO:0003735 ... P60490 37537169
    178351 8ev7:1T (2.89) BS04 MG ? GO:0003735 ... P60490 37537169
    178352 8ev7:1U (2.89) BS02 MG ? GO:0000027 ... P60491 37537169
    178353 8ev7:1V (2.89) BS02 MG ? GO:0003723 ... P60492 37537169
    178354 8ev7:1W (2.89) BS02 MG ? GO:0003735 ... Q5SHP3 37537169
    178355 8ev7:1Y (2.89) BS02 ZN ? GO:0003723 ... Q5SHP9 37537169
    178356 8ev7:1e (2.89) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    178357 8ev7:1k (2.89) BS02 MG ? GO:0003735 ... P80376 37537169
    178358 8ev7:1l (2.89) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    178359 8ev7:1l (2.89) BS04 MG ? GO:0000049 ... Q5SHN3 37537169
    178360 8ev7:1l (2.89) BS05 MG ? GO:0000049 ... Q5SHN3 37537169
    178361 8ev7:1m (2.89) BS05 MG ? GO:0000049 ... P80377 37537169
    178362 8ev7:1n (2.89) BS02 ZN ? GO:0003735 ... P0DOY6 37537169
    178363 8ev7:24 (2.89) BS02 ZN ? GO:0003735 ... Q5SJE1 37537169
    178364 8ev7:25 (2.89) BS02 ZN ? GO:0003735 ... P80339 37537169
    178365 8ev7:26 (2.89) BS02 ZN ? GO:0000049 ... P35871 37537169
    178366 8ev7:29 (2.89) BS02 ZN ? GO:0003735 ... Q5SHR2 37537169
    178367 8ev7:2D (2.89) BS03 MG ? GO:0002181 ... P60405 37537169
    178368 8ev7:2D (2.89) BS04 MG ? GO:0002181 ... P60405 37537169
    178369 8ev7:2E (2.89) BS02 MG ? GO:0003735 ... Q5SHN8 37537169
    178370 8ev7:2F (2.89) BS02 MG ? GO:0003735 ... Q5SHN9 37537169
    178371 8ev7:2F (2.89) BS03 MG ? GO:0003735 ... Q5SHN9 37537169
    178372 8ev7:2F (2.89) BS04 MG ? GO:0003735 ... Q5SHN9 37537169
    178373 8ev7:2Y (2.89) BS02 ZN ? GO:0003723 ... Q5SHP9 37537169
    178374 8ev7:2e (2.89) BS02 MG ? GO:0003723 ... Q5SHQ5 37537169
    178375 8ev7:2g (2.89) BS03 MG ? GO:0000028 ... P17291 37537169
    178376 8ev7:2g (2.89) BS04 MG ? GO:0000028 ... P17291 37537169
    178377 8ev7:2l (2.89) BS03 MG ? GO:0000049 ... Q5SHN3 37537169
    178378 8ev7:2n (2.89) BS02 ZN ? GO:0003735 ... P0DOY6 37537169
    178379 8ev7:2t (2.89) BS02 MG ? GO:0003723 ... P80380 37537169
    178380 8eve:A (2.35) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    178381 8eve:A (2.35) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    178382 8evf:A (2.87) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    178383 8evf:A (2.87) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    178384 8evp:AC (2.38) BS03 MG ? GO:0003735 ... N/A 37595043
    178385 8evp:AN (2.38) BS03 MG ? GO:0002181 ... P05748 37595043
    178386 8evp:AP (2.38) BS03 MG ? GO:0000448 ... P05740 37595043
    178387 8evp:Af (2.38) BS02 MG ? GO:0000027 ... P05744 37595043
    178388 8evp:Aj (2.38) BS03 MG ? GO:0000448 ... P49166 37595043
    178389 8evp:Ao (2.38) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    178390 8evp:BE (2.38) BS02 MG ? GO:0002181 ... P0CX35 37595043
    178391 8evq:AC (2.72) BS03 MG ? GO:0003735 ... N/A 37595043
    178392 8evq:AN (2.72) BS03 MG ? GO:0002181 ... P05748 37595043
    178393 8evq:Ae (2.72) BS02 MG ? GO:0003735 ... N/A 37595043
    178394 8evq:Ah (2.72) BS03 MG ? GO:0000463 ... P0CX84 37595043
    178395 8evq:Aj (2.72) BS03 MG ? GO:0000448 ... P49166 37595043
    178396 8evq:Ao (2.72) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    178397 8evr:AN (2.87) BS03 MG ? GO:0002181 ... P05748 37595043
    178398 8evr:AO (2.87) BS02 MG ? GO:0000470 ... P26784 37595043
    178399 8evr:AT (2.87) BS03 MG ? GO:0002181 ... Q02753 37595043
    178400 8evr:Ao (2.87) BS02 ZN ? GO:0002181 ... P0CX27 37595043
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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