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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    178001 8em4:A (2.83) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    178002 8em4:A (2.83) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    178003 8em4:A (2.83) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    178004 8em4:A (2.83) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    178005 8em4:A (2.83) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    178006 8em4:A (2.83) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    178007 8em4:A (2.83) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    178008 8em4:A (2.83) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    178009 8em4:B (2.83) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    178010 8em4:B (2.83) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    178011 8em4:B (2.83) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    178012 8em4:B (2.83) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    178013 8em4:B (2.83) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    178014 8em4:B (2.83) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    178015 8em4:B (2.83) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    178016 8em4:B (2.83) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    178017 8em4:B (2.83) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    178018 8em4:B (2.83) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    178019 8em4:B (2.83) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    178020 8em4:B (2.83) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    178021 8em4:B (2.83) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    178022 8em4:B (2.83) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    178023 8em4:B (2.83) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    178024 8em4:B (2.83) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    178025 8em4:B (2.83) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    178026 8em4:B (2.83) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    178027 8em4:B (2.83) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    178028 8em4:B (2.83) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    178029 8em4:B (2.83) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    178030 8em4:B (2.83) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    178031 8em4:B (2.83) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    178032 8em4:B (2.83) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    178033 8em4:B (2.83) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    178034 8em4:B (2.83) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    178035 8em4:B (2.83) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    178036 8em4:B (2.83) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    178037 8em4:B (2.83) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    178038 8em4:B (2.83) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    178039 8em4:B (2.83) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    178040 8em4:B (2.83) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    178041 8em4:B (2.83) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    178042 8em4:B (2.83) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    178043 8em4:B (2.83) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    178044 8em4:B (2.83) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    178045 8em4:B (2.83) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    178046 8em4:B (2.83) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    178047 8em4:B (2.83) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    178048 8em4:B (2.83) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    178049 8em7:A (2.97) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    178050 8em7:A (2.97) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    178051 8em7:A (2.97) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    178052 8em7:A (2.97) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    178053 8em7:A (2.97) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    178054 8em7:A (2.97) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    178055 8em7:A (2.97) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    178056 8em7:A (2.97) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    178057 8em7:A (2.97) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    178058 8em7:A (2.97) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    178059 8em7:A (2.97) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    178060 8em7:A (2.97) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    178061 8em7:A (2.97) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    178062 8em7:A (2.97) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    178063 8em7:A (2.97) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    178064 8em7:A (2.97) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    178065 8em7:A (2.97) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    178066 8em7:A (2.97) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    178067 8em7:A (2.97) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    178068 8em7:A (2.97) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    178069 8em7:A (2.97) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    178070 8em7:A (2.97) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    178071 8em7:A (2.97) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    178072 8em7:A (2.97) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    178073 8em7:A (2.97) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    178074 8em7:A (2.97) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    178075 8em7:A (2.97) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    178076 8em7:A (2.97) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    178077 8em7:A (2.97) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    178078 8em7:A (2.97) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    178079 8em7:A (2.97) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    178080 8em7:A (2.97) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    178081 8em7:A (2.97) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    178082 8em7:A (2.97) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    178083 8em7:A (2.97) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    178084 8em7:A (2.97) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    178085 8em7:A (2.97) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    178086 8em7:A (2.97) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    178087 8em7:A (2.97) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    178088 8em7:A (2.97) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    178089 8em7:A (2.97) BS41 CA ? GO:0005509 ... A2ARV4 36750096
    178090 8em7:A (2.97) BS42 CA ? GO:0005509 ... A2ARV4 36750096
    178091 8em7:A (2.97) BS43 CA ? GO:0005509 ... A2ARV4 36750096
    178092 8em7:A (2.97) BS44 CA ? GO:0005509 ... A2ARV4 36750096
    178093 8em7:B (2.97) BS01 CA ? GO:0005509 ... A2ARV4 36750096
    178094 8em7:B (2.97) BS02 CA ? GO:0005509 ... A2ARV4 36750096
    178095 8em7:B (2.97) BS03 CA ? GO:0005509 ... A2ARV4 36750096
    178096 8em7:B (2.97) BS04 CA ? GO:0005509 ... A2ARV4 36750096
    178097 8em7:B (2.97) BS05 CA ? GO:0005509 ... A2ARV4 36750096
    178098 8em7:B (2.97) BS06 CA ? GO:0005509 ... A2ARV4 36750096
    178099 8em7:B (2.97) BS07 CA ? GO:0005509 ... A2ARV4 36750096
    178100 8em7:B (2.97) BS08 CA ? GO:0005509 ... A2ARV4 36750096
    178101 8em7:B (2.97) BS09 CA ? GO:0005509 ... A2ARV4 36750096
    178102 8em7:B (2.97) BS10 CA ? GO:0005509 ... A2ARV4 36750096
    178103 8em7:B (2.97) BS11 CA ? GO:0005509 ... A2ARV4 36750096
    178104 8em7:B (2.97) BS12 CA ? GO:0005509 ... A2ARV4 36750096
    178105 8em7:B (2.97) BS13 CA ? GO:0005509 ... A2ARV4 36750096
    178106 8em7:B (2.97) BS14 CA ? GO:0005509 ... A2ARV4 36750096
    178107 8em7:B (2.97) BS15 CA ? GO:0005509 ... A2ARV4 36750096
    178108 8em7:B (2.97) BS16 CA ? GO:0005509 ... A2ARV4 36750096
    178109 8em7:B (2.97) BS17 CA ? GO:0005509 ... A2ARV4 36750096
    178110 8em7:B (2.97) BS18 CA ? GO:0005509 ... A2ARV4 36750096
    178111 8em7:B (2.97) BS19 CA ? GO:0005509 ... A2ARV4 36750096
    178112 8em7:B (2.97) BS20 CA ? GO:0005509 ... A2ARV4 36750096
    178113 8em7:B (2.97) BS21 CA ? GO:0005509 ... A2ARV4 36750096
    178114 8em7:B (2.97) BS22 CA ? GO:0005509 ... A2ARV4 36750096
    178115 8em7:B (2.97) BS23 CA ? GO:0005509 ... A2ARV4 36750096
    178116 8em7:B (2.97) BS24 CA ? GO:0005509 ... A2ARV4 36750096
    178117 8em7:B (2.97) BS25 CA ? GO:0005509 ... A2ARV4 36750096
    178118 8em7:B (2.97) BS26 CA ? GO:0005509 ... A2ARV4 36750096
    178119 8em7:B (2.97) BS27 CA ? GO:0005509 ... A2ARV4 36750096
    178120 8em7:B (2.97) BS28 CA ? GO:0005509 ... A2ARV4 36750096
    178121 8em7:B (2.97) BS29 CA ? GO:0005509 ... A2ARV4 36750096
    178122 8em7:B (2.97) BS30 CA ? GO:0005509 ... A2ARV4 36750096
    178123 8em7:B (2.97) BS31 CA ? GO:0005509 ... A2ARV4 36750096
    178124 8em7:B (2.97) BS32 CA ? GO:0005509 ... A2ARV4 36750096
    178125 8em7:B (2.97) BS33 CA ? GO:0005509 ... A2ARV4 36750096
    178126 8em7:B (2.97) BS34 CA ? GO:0005509 ... A2ARV4 36750096
    178127 8em7:B (2.97) BS35 CA ? GO:0005509 ... A2ARV4 36750096
    178128 8em7:B (2.97) BS36 CA ? GO:0005509 ... A2ARV4 36750096
    178129 8em7:B (2.97) BS37 CA ? GO:0005509 ... A2ARV4 36750096
    178130 8em7:B (2.97) BS38 CA ? GO:0005509 ... A2ARV4 36750096
    178131 8em7:B (2.97) BS39 CA ? GO:0005509 ... A2ARV4 36750096
    178132 8em7:B (2.97) BS40 CA ? GO:0005509 ... A2ARV4 36750096
    178133 8em7:B (2.97) BS41 CA ? GO:0005509 ... A2ARV4 36750096
    178134 8em7:B (2.97) BS42 CA ? GO:0005509 ... A2ARV4 36750096
    178135 8em7:B (2.97) BS43 CA ? GO:0005509 ... A2ARV4 36750096
    178136 8em7:B (2.97) BS44 CA ? GO:0005509 ... A2ARV4 36750096
    178137 8emm:3 (2.1) BS02 ZN ? GO:0002181 ... P0A7Q6 37308707
    178138 8emm:4 (2.1) BS03 ZN ? GO:0002181 ... P0A7M9 37308707
    178139 8emq:A (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178140 8emq:B (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178141 8emq:C (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178142 8emq:D (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178143 8emq:E (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178144 8emq:F (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178145 8emq:G (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178146 8emq:H (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178147 8emq:I (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178148 8emq:J (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178149 8emq:K (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178150 8emq:L (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178151 8emq:M (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178152 8emq:N (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178153 8emq:O (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178154 8emq:P (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178155 8emq:Q (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178156 8emq:R (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178157 8emq:S (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178158 8emq:T (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178159 8emq:U (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178160 8emq:V (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178161 8emq:W (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178162 8emq:X (1.66) BS01 ZN 1.16.3.1 GO:0004322 ... P09528 36578473
    178163 8emr:B (2.92) BS01 CA ? GO:0005509 ... P14314 37289586
    178164 8emr:B (2.92) BS02 CA ? GO:0005509 ... P14314 37289586
    178165 8emu:A (1.13) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36735827
    178166 8emv:A (3.6) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37172014
    178167 8emw:A (3.5) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37172014
    178168 8emx:A (3.3) BS01 CA 3.1.4.11 GO:0003073 ... Q01970 37172014
    178169 8enl:B (2.37) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178170 8enl:B (2.37) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178171 8enl:D (2.37) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178172 8enl:D (2.37) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178173 8enm:B (2.14) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178174 8enm:B (2.14) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178175 8enm:D (2.14) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178176 8enm:D (2.14) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178177 8enn:B (2.58) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178178 8enn:B (2.58) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178179 8enn:D (2.58) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178180 8enn:D (2.58) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178181 8eno:B (2.71) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178182 8eno:B (2.71) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178183 8eno:D (2.71) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178184 8eno:D (2.71) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    178185 8enp:A (-1.00) BS01 ZN 2.3.2.26 N/A Q05086 N/A
    178186 8eoc:B (1.47) BS01 CU ? GO:0003756 ... P0AEG4 36829940
    178187 8eoe:D (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178188 8eoe:D (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178189 8eoe:D (3.2) BS06 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178190 8eof:D (3.3) BS04 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178191 8eof:D (3.3) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178192 8eof:D (3.3) BS06 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178193 8eog:D (3.3) BS01 CA ? GO:0005245 ... P13806 37196677
    178194 8eog:K (3.3) BS04 CA ? GO:0005216 ... Q13936 37196677
    178195 8eop:A (3.7) BS02 MG 7.6.2.1 GO:0000139 ... Q8IZY2 36484366
    178196 8eos:D (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178197 8eos:D (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178198 8eos:D (3.1) BS07 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178199 8eot:D (3.3) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    178200 8eot:D (3.3) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36745813
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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