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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177401 8eai:A (2.76) BS01 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177402 8eai:B (2.76) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177403 8eai:C (2.76) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177404 8eai:D (2.76) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177405 8eai:E (2.76) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177406 8eai:F (2.76) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177407 8eaj:A (2.45) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177408 8eaj:B (2.45) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177409 8eaj:C (2.45) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177410 8eaj:D (2.45) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177411 8eaj:E (2.45) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177412 8eaj:F (2.45) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177413 8eak:A (2.67) BS01 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177414 8eak:B (2.67) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177415 8eak:C (2.67) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177416 8eak:D (2.67) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177417 8eak:E (2.67) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177418 8eak:F (2.67) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177419 8eal:A (2.34) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177420 8eal:B (2.34) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177421 8eal:C (2.34) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177422 8eal:D (2.34) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177423 8eal:E (2.34) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177424 8eal:F (2.34) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177425 8eam:A (2.59) BS01 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177426 8eam:B (2.59) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177427 8eam:C (2.59) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177428 8eam:D (2.59) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177429 8eam:E (2.59) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177430 8eam:F (2.59) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177431 8eaq:A (3.26) BS01 ZN ? GO:0000902 ... P29994 36376291
    177432 8eaq:A (3.26) BS02 CA ? GO:0000902 ... P29994 36376291
    177433 8eaq:B (3.26) BS03 ZN ? GO:0000902 ... P29994 36376291
    177434 8eaq:B (3.26) BS04 CA ? GO:0000902 ... P29994 36376291
    177435 8eaq:C (3.26) BS02 ZN ? GO:0000902 ... P29994 36376291
    177436 8eaq:C (3.26) BS03 CA ? GO:0000902 ... P29994 36376291
    177437 8eaq:D (3.26) BS04 ZN ? GO:0000902 ... P29994 36376291
    177438 8eaq:D (3.26) BS05 CA ? GO:0000902 ... P29994 36376291
    177439 8ear:A (3.5) BS01 ZN ? GO:0000902 ... P29994 36376291
    177440 8ear:B (3.5) BS01 ZN ? GO:0000902 ... P29994 36376291
    177441 8ear:C (3.5) BS01 ZN ? GO:0000902 ... P29994 36376291
    177442 8ear:D (3.5) BS02 ZN ? GO:0000902 ... P29994 36376291
    177443 8eaz:A (3.08) BS01 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177444 8eaz:A (3.08) BS02 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177445 8eaz:A (3.08) BS03 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177446 8eaz:A (3.08) BS04 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177447 8eaz:A (3.08) BS05 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177448 8eaz:A (3.08) BS06 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177449 8eaz:A (3.08) BS07 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177450 8eaz:B (3.08) BS01 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177451 8eaz:B (3.08) BS02 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177452 8eaz:B (3.08) BS03 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177453 8eaz:B (3.08) BS04 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177454 8eaz:B (3.08) BS05 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177455 8eaz:B (3.08) BS06 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177456 8eaz:B (3.08) BS07 ZN 2.3.2.31 N/A Q9BYM8 36631489
    177457 8eb0:A (3.03) BS01 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 36631489
    177458 8eb0:A (3.03) BS02 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 36631489
    177459 8eb0:A (3.03) BS03 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 36631489
    177460 8eb0:A (3.03) BS04 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 36631489
    177461 8eb0:A (3.03) BS05 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 36631489
    177462 8eb0:A (3.03) BS06 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 36631489
    177463 8eb0:A (3.03) BS07 ZN 2.3.2.27 GO:0008270 ... Q9NWF9 36631489
    177464 8eb5:A (2.5) BS03 ZN ? GO:0003677 ... Q25442 37491363
    177465 8ebs:E (4.0) BS01 ZN ? GO:0000438 ... Q13888 37076618
    177466 8ebs:E (4.0) BS02 ZN ? GO:0000438 ... Q13888 37076618
    177467 8ebs:E (4.0) BS03 ZN ? GO:0000438 ... Q13888 37076618
    177468 8ebs:F (4.0) BS01 ZN ? GO:0000438 ... Q13889 37076618
    177469 8ebs:F (4.0) BS02 ZN ? GO:0000438 ... Q13889 37076618
    177470 8ebs:J (4.0) BS01 CA ? GO:0000278 ... P41208 37076618
    177471 8ebs:J (4.0) BS02 CA ? GO:0000278 ... P41208 37076618
    177472 8ebt:E (3.9) BS01 ZN ? GO:0000438 ... Q13888 37076618
    177473 8ebt:E (3.9) BS02 ZN ? GO:0000438 ... Q13888 37076618
    177474 8ebt:E (3.9) BS03 ZN ? GO:0000438 ... Q13888 37076618
    177475 8ebt:F (3.9) BS01 ZN ? GO:0000438 ... Q13889 37076618
    177476 8ebt:F (3.9) BS02 ZN ? GO:0000438 ... Q13889 37076618
    177477 8ebt:J (3.9) BS01 CA ? GO:0005509 ... P41208 37076618
    177478 8ebt:J (3.9) BS02 CA ? GO:0005509 ... P41208 37076618
    177479 8ebt:K (3.9) BS03 ZN ? GO:0003684 ... P23025 37076618
    177480 8ebu:E (3.3) BS01 ZN ? GO:0000438 ... Q13888 37076618
    177481 8ebu:E (3.3) BS02 ZN ? GO:0000438 ... Q13888 37076618
    177482 8ebu:E (3.3) BS03 ZN ? GO:0000438 ... Q13888 37076618
    177483 8ebu:F (3.3) BS01 ZN ? GO:0000438 ... Q13889 37076618
    177484 8ebu:F (3.3) BS02 ZN ? GO:0000438 ... Q13889 37076618
    177485 8ebu:K (3.3) BS03 ZN ? GO:0000110 ... P23025 37076618
    177486 8ebv:E (7.1) BS01 ZN ? GO:0000438 ... Q13888 37076618
    177487 8ebv:E (7.1) BS02 ZN ? GO:0000438 ... Q13888 37076618
    177488 8ebv:E (7.1) BS03 ZN ? GO:0000438 ... Q13888 37076618
    177489 8ebv:F (7.1) BS01 ZN ? GO:0000438 ... Q13889 37076618
    177490 8ebv:F (7.1) BS02 ZN ? GO:0000438 ... Q13889 37076618
    177491 8ebv:J (7.1) BS01 CA ? GO:0000278 ... P41208 37076618
    177492 8ebv:J (7.1) BS02 CA ? GO:0000278 ... P41208 37076618
    177493 8ebw:E (5.6) BS01 ZN ? GO:0000438 ... Q13888 37076618
    177494 8ebw:E (5.6) BS02 ZN ? GO:0000438 ... Q13888 37076618
    177495 8ebw:E (5.6) BS03 ZN ? GO:0000438 ... Q13888 37076618
    177496 8ebw:F (5.6) BS01 ZN ? GO:0000438 ... Q13889 37076618
    177497 8ebw:F (5.6) BS02 ZN ? GO:0000438 ... Q13889 37076618
    177498 8ebw:J (5.6) BS01 CA ? GO:0000278 ... P41208 37076618
    177499 8ebw:J (5.6) BS02 CA ? GO:0000278 ... P41208 37076618
    177500 8ebx:E (3.6) BS01 ZN ? GO:0000438 ... Q13888 37076618
    177501 8ebx:E (3.6) BS02 ZN ? GO:0000438 ... Q13888 37076618
    177502 8ebx:E (3.6) BS03 ZN ? GO:0000438 ... Q13888 37076618
    177503 8ebx:F (3.6) BS01 ZN ? GO:0000438 ... Q13889 37076618
    177504 8ebx:F (3.6) BS02 ZN ? GO:0000438 ... Q13889 37076618
    177505 8ebx:J (3.6) BS01 CA ? GO:0000278 ... P41208 37076618
    177506 8ebx:J (3.6) BS02 CA ? GO:0000278 ... P41208 37076618
    177507 8ebx:K (3.6) BS03 ZN ? GO:0000110 ... P23025 37076618
    177508 8eby:E (3.6) BS01 ZN ? GO:0000438 ... Q13888 37076618
    177509 8eby:E (3.6) BS02 ZN ? GO:0000438 ... Q13888 37076618
    177510 8eby:E (3.6) BS03 ZN ? GO:0000438 ... Q13888 37076618
    177511 8eby:F (3.6) BS01 ZN ? GO:0000438 ... Q13889 37076618
    177512 8eby:F (3.6) BS02 ZN ? GO:0000438 ... Q13889 37076618
    177513 8eby:K (3.6) BS03 ZN ? GO:0000110 ... P23025 37076618
    177514 8ec0:K (3.3) BS01 CU 7.1.1.9 GO:0004129 ... P00401 37188665
    177515 8ec3:A (1.5) BS01 MG ? N/A G9BXS5 37380082
    177516 8ecc:A (2.44) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    177517 8ecc:A (2.44) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    177518 8ecc:C (2.44) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    177519 8ecc:C (2.44) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    177520 8ecs:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177521 8ecs:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177522 8ecs:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177523 8ecs:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177524 8ect:A (1.6) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177525 8ect:A (1.6) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177526 8ect:B (1.6) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177527 8ect:B (1.6) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177528 8ecu:A (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177529 8ecu:A (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177530 8ecu:B (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177531 8ecu:B (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177532 8ecy:A (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177533 8ecy:A (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177534 8ecy:B (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177535 8ecy:B (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177536 8ecy:C (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    177537 8ecy:D (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177538 8ecy:D (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177539 8ecy:E (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    177540 8ecy:F (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177541 8ecy:F (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177542 8ecy:G (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    177543 8ecy:H (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177544 8ecy:H (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177545 8ecy:I (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177546 8ecy:I (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177547 8ecy:J (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177548 8ecy:J (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177549 8ecy:K (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    177550 8ecy:L (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177551 8ecy:L (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177552 8ecy:M (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177553 8ecy:M (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177554 8ecy:N (2.0) BS01 CA ? GO:0005254 ... E1BF86 36289327
    177555 8ecy:Q (2.0) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177556 8ecy:Q (2.0) BS02 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15103 36289327
    177557 8edd:A (1.5) BS01 FE 3.1.21.2 GO:0003677 ... Q6GGE2 N/A
    177558 8edd:A (1.5) BS02 FE 3.1.21.2 GO:0003677 ... Q6GGE2 N/A
    177559 8edd:A (1.5) BS03 ZN 3.1.21.2 GO:0003677 ... Q6GGE2 N/A
    177560 8edg:A (4.64) BS06 ZN ? GO:0003677 ... Q25438 37491363
    177561 8edg:C (4.64) BS05 ZN ? GO:0003677 ... Q25438 37491363
    177562 8edg:E (4.64) BS05 ZN ? GO:0003677 ... Q25438 37491363
    177563 8edg:G (4.64) BS06 ZN ? GO:0003677 ... Q25438 37491363
    177564 8edg:I (4.64) BS03 ZN ? GO:0003677 ... Q25438 37491363
    177565 8edg:K (4.64) BS03 ZN ? GO:0003677 ... Q25438 37491363
    177566 8edj:A (1.83) BS02 ZN 3.5.4.38 GO:0000932 ... Q7YR23 36470880
    177567 8edj:A (1.83) BS03 ZN 3.5.4.38 GO:0000932 ... Q7YR23 36470880
    177568 8edk:A (2.5) BS01 CA ? N/A P34710 38363837
    177569 8edz:A (2.65) BS02 MN ? GO:0003723 ... C6H0Y9 N/A
    177570 8edz:A (2.65) BS03 MN ? GO:0003723 ... C6H0Y9 N/A
    177571 8ee3:A (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177572 8ee3:A (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177573 8ee3:B (1.55) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177574 8ee3:B (1.55) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177575 8eew:B (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177576 8eex:A (2.95) BS02 ZN ? GO:0051607 ... A0A401FT36 36423276
    177577 8eex:A (2.95) BS03 ZN ? GO:0051607 ... A0A401FT36 36423276
    177578 8eex:A (2.95) BS04 ZN ? GO:0051607 ... A0A401FT36 36423276
    177579 8eey:A (2.53) BS03 ZN ? GO:0051607 ... A0A401FT36 36423276
    177580 8eey:A (2.53) BS04 ZN ? GO:0051607 ... A0A401FT36 36423276
    177581 8eey:A (2.53) BS05 ZN ? GO:0051607 ... A0A401FT36 36423276
    177582 8eey:A (2.53) BS06 ZN ? GO:0051607 ... A0A401FT36 36423276
    177583 8ef9:A (2.4) BS04 MG 2.7.7.7 GO:0003676 ... A0A4W6BKE5 36583344
    177584 8efc:A (2.8) BS04 MG 2.7.7.7 GO:0003676 ... A0A4W6BKE5 36583344
    177585 8efe:A (3.8) BS01 MG ? GO:0003774 ... P12883 36633586
    177586 8eff:B (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177587 8eff:D (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177588 8efg:A (1.5) BS01 ZN 3.1.21.- GO:0004518 ... Q6P1N9 36881763
    177589 8efh:A (3.3) BS01 MG ? GO:0003774 ... P12883 36633586
    177590 8efk:A (3.0) BS02 MG 2.7.7.7 GO:0003676 ... A0A4W6BKE5 36583344
    177591 8efr:E (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177592 8efr:L (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177593 8efr:M (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177594 8efr:N (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177595 8efr:O (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177596 8efr:P (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177597 8efr:Q (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177598 8efr:R (5.48) BS03 MG 3.6.5.5 GO:0003924 ... O60313 37612506
    177599 8efy:A (3.16) BS03 MG 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    177600 8efy:C (3.16) BS04 MG 3.6.4.12 GO:0000400 ... Q5SL87 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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