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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177201 8e4s:A (2.4) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    177202 8e4x:A (2.8) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 36243986
    177203 8e4x:B (2.8) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 36243986
    177204 8e51:B (2.594) BS01 CA N/A GO:0005509 ... N/A 36911992
    177205 8e51:B (2.594) BS02 CA N/A GO:0005509 ... N/A 36911992
    177206 8e51:B (2.594) BS03 CA N/A GO:0005509 ... N/A 36911992
    177207 8e51:B (2.594) BS04 CA N/A GO:0005509 ... N/A 36911992
    177208 8e51:B (2.594) BS05 CA N/A GO:0005509 ... N/A 36911992
    177209 8e51:B (2.594) BS06 CA N/A GO:0005509 ... N/A 36911992
    177210 8e51:C (2.594) BS01 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    177211 8e51:C (2.594) BS02 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    177212 8e51:C (2.594) BS03 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    177213 8e51:C (2.594) BS04 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    177214 8e51:C (2.594) BS05 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    177215 8e51:C (2.594) BS06 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    177216 8e51:C (2.594) BS07 CA ? GO:0005509 ... A0A5N5MKD0 36911992
    177217 8e52:AAA (2.8) BS01 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    177218 8e52:AAA (2.8) BS02 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    177219 8e52:AAA (2.8) BS03 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    177220 8e52:AAA (2.8) BS04 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    177221 8e53:AAA (1.7) BS01 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    177222 8e53:AAA (1.7) BS02 CA 3.4.21.64 GO:0004252 ... P06873 36044956
    177223 8e56:A (2.8) BS01 CA ? GO:0005216 ... P07293 36417914
    177224 8e56:F (2.8) BS02 CA ? N/A P13806 36417914
    177225 8e57:A (2.8) BS01 CA ? GO:0005216 ... P07293 36417914
    177226 8e57:F (2.8) BS01 CA ? N/A P13806 36417914
    177227 8e58:A (3.0) BS01 CA ? GO:0005216 ... P07293 36417914
    177228 8e58:F (3.0) BS01 CA ? N/A P13806 36417914
    177229 8e59:A (3.1) BS02 CA ? GO:0005216 ... Q01668 36417914
    177230 8e59:D (3.1) BS01 CA ? N/A P54289 36417914
    177231 8e5a:A (3.3) BS01 CA ? GO:0005216 ... Q01668 36417914
    177232 8e5a:D (3.3) BS01 CA ? N/A P54289 36417914
    177233 8e5b:A (3.3) BS03 CA ? GO:0005216 ... Q01668 36417914
    177234 8e5b:D (3.3) BS01 CA ? N/A P54289 36417914
    177235 8e5d:A (2.39) BS03 ZN 3.5.4.- N/A P0DUH5 37460895
    177236 8e5d:A (2.39) BS04 MG 3.5.4.- N/A P0DUH5 37460895
    177237 8e5e:A (2.62) BS03 ZN 3.5.4.- N/A P0DUH5 37460895
    177238 8e5e:A (2.62) BS04 MG 3.5.4.- N/A P0DUH5 37460895
    177239 8e5k:B (4.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177240 8e5k:B (4.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177241 8e5k:B (4.2) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177242 8e5m:A (1.84) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177243 8e5m:A (1.84) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177244 8e5m:B (1.84) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177245 8e5m:B (1.84) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177246 8e5m:C (1.84) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177247 8e5m:C (1.84) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177248 8e5m:D (1.84) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177249 8e5m:D (1.84) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177250 8e5m:E (1.84) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177251 8e5m:E (1.84) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177252 8e5m:F (1.84) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177253 8e5m:F (1.84) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177254 8e5n:A (2.538) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177255 8e5n:A (2.538) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177256 8e5n:B (2.538) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177257 8e5n:B (2.538) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177258 8e5n:C (2.538) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177259 8e5n:C (2.538) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177260 8e5n:D (2.538) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177261 8e5n:D (2.538) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177262 8e5n:E (2.538) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177263 8e5n:E (2.538) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177264 8e5n:F (2.538) BS01 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177265 8e5n:F (2.538) BS02 MN 3.5.3.1 GO:0000050 ... P05089 36822300
    177266 8e5o:B (4.4) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177267 8e5o:B (4.4) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177268 8e5o:B (4.4) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177269 8e60:A (2.38) BS01 MN ? GO:0005384 ... Q9RTP8 37039477
    177270 8e60:A (2.38) BS02 MN ? GO:0005384 ... Q9RTP8 37039477
    177271 8e6h:A (2.39) BS01 MN ? GO:0005384 ... Q9RTP8 37039477
    177272 8e6h:A (2.39) BS02 MN ? GO:0005384 ... Q9RTP8 37039477
    177273 8e6i:A (2.52) BS01 MN ? GO:0005384 ... Q9RTP8 37039477
    177274 8e6i:A (2.52) BS02 MN ? GO:0005384 ... Q9RTP8 37039477
    177275 8e6l:A (3.12) BS01 MN ? GO:0005384 ... Q9RTP8 37039477
    177276 8e6n:A (2.4) BS01 MN ? GO:0005384 ... Q9RTP8 37039477
    177277 8e6s:A (4.6) BS03 ZN N/A N/A O94759 N/A
    177278 8e6s:A (4.6) BS04 CA N/A N/A O94759 N/A
    177279 8e6s:B (4.6) BS03 ZN N/A N/A O94759 N/A
    177280 8e6s:B (4.6) BS04 CA N/A N/A O94759 N/A
    177281 8e6s:C (4.6) BS03 ZN N/A N/A O94759 N/A
    177282 8e6s:C (4.6) BS04 CA N/A N/A O94759 N/A
    177283 8e6s:D (4.6) BS03 ZN N/A N/A O94759 N/A
    177284 8e6s:D (4.6) BS04 CA N/A N/A O94759 N/A
    177285 8e6v:A (3.3) BS03 ZN N/A N/A O94759 N/A
    177286 8e6x:B (4.27) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177287 8e6x:B (4.27) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177288 8e6x:B (4.27) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177289 8e6z:B (4.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177290 8e6z:B (4.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177291 8e6z:B (4.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177292 8e73:FD (3.2) BS01 FE ? GO:0005739 ... A0A1S3VXN7 36581760
    177293 8e73:G2 (3.2) BS01 ZN ? GO:0005737 ... A0A1S3U544 36581760
    177294 8e73:S6 (3.2) BS01 ZN ? GO:0005739 ... A0A1S3VYF3 36581760
    177295 8e74:D (2.94) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177296 8e74:D (2.94) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177297 8e74:D (2.94) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177298 8e79:D (3.71) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177299 8e79:D (3.71) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177300 8e79:D (3.71) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177301 8e7a:A (1.3) BS01 ZN ? GO:0000976 ... P04637 37140445
    177302 8e7b:A (2.5) BS01 ZN ? GO:0000976 ... P04637 37140445
    177303 8e7b:B (2.5) BS01 ZN ? GO:0000976 ... P04637 37140445
    177304 8e7f:A (2.0) BS01 CA 3.4.21.- GO:0004252 ... P09489 36859523
    177305 8e7f:A (2.0) BS02 CA 3.4.21.- GO:0004252 ... P09489 36859523
    177306 8e7f:A (2.0) BS03 CA 3.4.21.- GO:0004252 ... P09489 36859523
    177307 8e7q:A (1.9) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    177308 8e7q:B (1.9) BS03 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    177309 8e7r:A (1.975) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    177310 8e7r:B (1.975) BS03 ZN 2.5.1.- GO:0000287 ... Q739M9 37252104
    177311 8e7s:K (3.2) BS02 CU 7.1.1.9 GO:0004129 ... P00401 37188665
    177312 8e7s:k (3.2) BS01 CU 7.1.1.9 GO:0004129 ... P00401 37188665
    177313 8e7u:A (1.19) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177314 8e7u:A (1.19) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177315 8e7u:B (1.19) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177316 8e7u:B (1.19) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    177317 8e7v:B (3.1) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    177318 8e7v:C (3.1) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    177319 8e7v:D (3.1) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    177320 8e82:D (3.03) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177321 8e82:D (3.03) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177322 8e82:D (3.03) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177323 8e85:A (1.72) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177324 8e85:A (1.72) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177325 8e86:A (1.78) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177326 8e86:A (1.78) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177327 8e87:A (2.19) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177328 8e87:A (2.19) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177329 8e88:A (2.4) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177330 8e88:A (2.4) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177331 8e8b:A (2.2) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177332 8e8c:A (2.25) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177333 8e8c:A (2.25) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177334 8e8d:A (2.09) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177335 8e8d:A (2.09) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177336 8e8e:A (2.05) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177337 8e8e:A (2.05) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177338 8e8f:A (2.14) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177339 8e8f:A (2.14) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177340 8e8g:A (2.13) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177341 8e8g:A (2.13) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177342 8e8h:A (2.13) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177343 8e8h:A (2.13) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177344 8e8j:A (2.4) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177345 8e8j:A (2.4) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177346 8e8k:A (2.4) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177347 8e8k:A (2.4) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 36702254
    177348 8e8m:D (3.13) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177349 8e8m:D (3.13) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177350 8e8m:D (3.13) BS06 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177351 8e8q:B (3.12) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    177352 8e8q:C (3.12) BS02 MG ? GO:0005524 ... P0A6H1 N/A
    177353 8e8q:D (3.12) BS03 MG ? GO:0005524 ... P0A6H1 N/A
    177354 8e8w:A (2.5) BS01 FE2 1.14.13.250 GO:0004497 ... A0A411MR89 N/A
    177355 8e8w:A (2.5) BS02 FE2 1.14.13.250 GO:0004497 ... A0A411MR89 N/A
    177356 8e8w:B (2.5) BS01 FE2 1.14.13.250 GO:0004497 ... A0A411MR89 N/A
    177357 8e8w:B (2.5) BS02 FE2 1.14.13.250 GO:0004497 ... A0A411MR89 N/A
    177358 8e91:B (2.57) BS02 MG ? GO:0002020 ... P0A6H1 N/A
    177359 8e91:C (2.57) BS02 MG ? GO:0002020 ... P0A6H1 N/A
    177360 8e95:D (2.9) BS03 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177361 8e95:D (2.9) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177362 8e95:D (2.9) BS05 MG 2.7.7.6 GO:0000287 ... P9WGY7 37116494
    177363 8e9a:A (2.69) BS02 MG 2.7.7.7 GO:0003677 ... P42494 37301907
    177364 8e9e:B (2.844) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 36218371
    177365 8e9g:F (2.6) BS01 ZN 7.1.1.- GO:0003954 ... A0QU31 36952383
    177366 8e9h:F (2.7) BS02 ZN 7.1.1.- GO:0003954 ... A0QU31 36952383
    177367 8e9i:F (2.8) BS02 ZN 7.1.1.- GO:0003954 ... A0QU31 36952383
    177368 8ea3:C (3.7) BS04 MG ? N/A A0A8J0PCL3 36442503
    177369 8ea3:I (3.7) BS01 MG ? N/A A0A8J0PCL3 36442503
    177370 8ea3:K (3.7) BS02 MG ? N/A A0A8J0PCL3 36442503
    177371 8ea3:W (3.7) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    177372 8ea3:X (3.7) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    177373 8ea4:C (3.0) BS03 MG ? N/A A0A8J0PCL3 36442503
    177374 8ea4:I (3.0) BS02 MG ? N/A A0A8J0PCL3 36442503
    177375 8ea4:J (3.0) BS01 MG ? N/A A0A8J0PCL3 36442503
    177376 8ea4:L (3.0) BS01 MG ? N/A A0A8J0PCL3 36442503
    177377 8ea4:W (3.0) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    177378 8ea4:X (3.0) BS06 MG ? GO:0003676 ... A0A979HMQ2 36442503
    177379 8eae:A (2.56) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    177380 8eae:A (2.56) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    177381 8eae:C (2.56) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    177382 8eae:C (2.56) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    177383 8eaf:A (2.62) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177384 8eaf:B (2.62) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177385 8eaf:C (2.62) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177386 8eaf:D (2.62) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177387 8eaf:E (2.62) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177388 8eaf:F (2.62) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177389 8eag:A (3.01) BS01 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177390 8eag:B (3.01) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177391 8eag:C (3.01) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177392 8eag:D (3.01) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177393 8eag:E (3.01) BS04 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177394 8eag:F (3.01) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177395 8eah:A (2.48) BS02 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177396 8eah:B (2.48) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177397 8eah:C (2.48) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177398 8eah:D (2.48) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177399 8eah:E (2.48) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    177400 8eah:F (2.48) BS03 ZN 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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