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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177001 8dvy:A (2.36) BS06 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    177002 8dw6:B (3.5) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    177003 8dw6:C (3.5) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    177004 8dw6:H (3.5) BS02 ZN 2.7.7.- GO:0003896 ... P04520 37474605
    177005 8dw7:A (1.96) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    177006 8dw7:D (1.96) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    177007 8dwb:AAA (1.602) BS02 CA 3.2.1.18 GO:0004308 ... Q8AZ87 36640354
    177008 8dwd:A (1.68) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177009 8dwd:A (1.68) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177010 8dwe:A (2.2) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177011 8dwe:A (2.2) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177012 8dwe:D (2.2) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177013 8dwe:D (2.2) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177014 8dwf:A (2.6) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177015 8dwf:A (2.6) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177016 8dwf:D (2.6) BS04 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177017 8dwf:D (2.6) BS05 CA 3.2.2.31 GO:0000701 ... P83847 N/A
    177018 8dwj:A (3.9) BS03 ZN 2.7.7.- GO:0003896 ... P04520 37474605
    177019 8dwk:A (2.5) BS02 MN 3.1.3.16 GO:0016787 ... P62136 37002212
    177020 8dwk:A (2.5) BS03 MN 3.1.3.16 GO:0016787 ... P62136 37002212
    177021 8dwk:B (2.5) BS02 MN 3.1.3.16 GO:0016787 ... P62136 37002212
    177022 8dwk:B (2.5) BS03 MN 3.1.3.16 GO:0016787 ... P62136 37002212
    177023 8dwl:A (2.0) BS01 ZN 3.1.3.16 GO:0016787 ... P62136 37002212
    177024 8dwl:A (2.0) BS02 ZN 3.1.3.16 GO:0016787 ... P62136 37002212
    177025 8dwl:C (2.0) BS02 ZN 3.1.3.16 GO:0016787 ... P62136 37002212
    177026 8dwl:C (2.0) BS03 ZN 3.1.3.16 GO:0016787 ... P62136 37002212
    177027 8dx0:B (1.45) BS01 MG 2.7.13.3 GO:0016310 ... Q9KJT3 36764524
    177028 8dx2:A (2.0) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177029 8dx8:A (1.85) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177030 8dxe:A (1.85) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177031 8dxg:A (2.1) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177032 8dxh:A (1.8) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177033 8dxi:A (1.95) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177034 8dxj:A (1.8) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177035 8dxk:A (2.0) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177036 8dxl:A (2.25) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177037 8dxm:A (1.99) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 37115705
    177038 8dy7:D (3.18) BS02 ZN 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    177039 8dy7:D (3.18) BS03 ZN 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    177040 8dy7:D (3.18) BS04 MG 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    177041 8dy7:I (3.18) BS02 ZN ? GO:0003677 ... F2RGQ4 36888660
    177042 8dy9:D (3.12) BS03 ZN 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    177043 8dy9:D (3.12) BS04 ZN 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    177044 8dy9:D (3.12) BS05 MG 2.7.7.6 GO:0000287 ... F2RIS6 36888660
    177045 8dyo:B (7.1) BS01 MG ? GO:0000054 ... P32835 36103578
    177046 8dyq:A (2.15) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    177047 8dyq:C (2.15) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    177048 8dyq:E (2.15) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    177049 8dyq:G (2.15) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    177050 8dze:A (2.99) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177051 8dze:B (2.99) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177052 8dze:C (2.99) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177053 8dze:D (2.99) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177054 8dze:E (2.99) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177055 8dze:F (2.99) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177056 8dzf:A (3.69) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177057 8dzf:B (3.69) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177058 8dzf:C (3.69) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177059 8dzf:D (3.69) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177060 8dzf:E (3.69) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177061 8dzf:F (3.69) BS01 ZN ? GO:0000166 ... B7UTD6 36326250
    177062 8dzg:A (3.1) BS02 ZN ? GO:0000166 ... B7UTD6 36326250
    177063 8dzg:B (3.1) BS02 ZN ? GO:0000166 ... B7UTD6 36326250
    177064 8dzg:C (3.1) BS02 ZN ? GO:0000166 ... B7UTD6 36326250
    177065 8dzg:D (3.1) BS02 ZN ? GO:0000166 ... B7UTD6 36326250
    177066 8dzg:E (3.1) BS02 ZN ? GO:0000166 ... B7UTD6 36326250
    177067 8dzg:F (3.1) BS02 ZN ? GO:0000166 ... B7UTD6 36326250
    177068 8dzj:A (2.9) BS04 ZN 3.1.-.- GO:0003677 ... A0A2U3D0N8 37400536
    177069 8dzk:A (2.1) BS02 FE2 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177070 8dzk:A (2.1) BS03 ZN 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177071 8dzk:B (2.1) BS02 FE2 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177072 8dzk:B (2.1) BS03 ZN 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177073 8dzk:C (2.1) BS02 FE2 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177074 8dzk:C (2.1) BS03 ZN 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177075 8dzk:D (2.1) BS02 FE2 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177076 8dzk:D (2.1) BS03 ZN 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177077 8dzk:E (2.1) BS02 FE2 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177078 8dzk:E (2.1) BS03 ZN 3.1.4.- GO:0000375 ... C4M1P9 36484984
    177079 8dzo:A (1.8) BS01 MG 3.6.5.2 GO:0003400 ... Q9NR31 36369712
    177080 8dzo:B (1.8) BS01 CA 3.6.5.2 GO:0003400 ... Q9NR31 36369712
    177081 8dzt:A (1.8) BS01 MG 3.6.5.2 GO:0003400 ... Q9NR31 36369712
    177082 8e0e:A (2.0) BS01 MG ? GO:0005245 ... A0A8I6AEJ4 36494348
    177083 8e0f:A (2.7) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 36243986
    177084 8e0f:B (2.7) BS04 ZN 3.5.4.37 GO:0003723 ... P78563 36243986
    177085 8e0q:A (2.66) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    177086 8e0q:A (2.66) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    177087 8e0q:A (2.66) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    177088 8e0q:B (2.66) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    177089 8e0q:B (2.66) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    177090 8e0q:B (2.66) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    177091 8e0v:A (2.3) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 36197914
    177092 8e0v:B (2.3) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 36197914
    177093 8e0v:C (2.3) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 36197914
    177094 8e0v:D (2.3) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 36197914
    177095 8e0x:A (1.97) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 36197914
    177096 8e0x:B (1.97) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 36197914
    177097 8e0x:D (1.97) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 36197914
    177098 8e14:A (3.36) BS05 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P03354 37084813
    177099 8e14:E (3.36) BS05 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... P03354 37084813
    177100 8e1d:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 37353163
    177101 8e1d:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 37353163
    177102 8e1d:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 37353163
    177103 8e1f:D (2.16) BS01 MG ? GO:0043565 ... P41212 N/A
    177104 8e1f:D (2.16) BS02 MG ? GO:0043565 ... P41212 N/A
    177105 8e1h:A (1.9) BS03 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    177106 8e1h:A (1.9) BS04 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    177107 8e1i:A (2.0) BS03 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    177108 8e1i:A (2.0) BS04 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    177109 8e1q:A (2.5) BS01 MN ? GO:0003723 ... C6H0Y9 N/A
    177110 8e1q:A (2.5) BS02 MN ? GO:0003723 ... C6H0Y9 N/A
    177111 8e1s:A (1.72) BS03 MN 2.7.4.24 GO:0000829 ... O74429 36468882
    177112 8e1s:A (1.72) BS04 MN 2.7.4.24 GO:0000829 ... O74429 36468882
    177113 8e1t:A (1.71) BS03 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    177114 8e1u:A (2.65) BS01 MG N/A N/A N/A 37226637
    177115 8e1u:B (2.65) BS01 MG N/A N/A N/A 37226637
    177116 8e1u:C (2.65) BS01 MG N/A N/A N/A 37226637
    177117 8e1u:D (2.65) BS01 MG N/A N/A N/A 37226637
    177118 8e1u:E (2.65) BS01 MG N/A N/A N/A 37226637
    177119 8e1u:F (2.65) BS01 MG N/A N/A N/A 37226637
    177120 8e1u:G (2.65) BS01 MG N/A N/A N/A 37226637
    177121 8e1u:H (2.65) BS01 MG N/A N/A N/A 37226637
    177122 8e1v:A (1.9) BS02 MG 2.7.4.24 GO:0000829 ... O74429 36468882
    177123 8e1w:A (2.1) BS01 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 36598350
    177124 8e21:A (2.61) BS01 MN ? GO:0003723 ... C6H0Y9 N/A
    177125 8e21:A (2.61) BS02 MN ? GO:0003723 ... C6H0Y9 N/A
    177126 8e2l:B (3.51) BS04 MG ? GO:0003678 ... A0A4W6C5C5 36400570
    177127 8e2l:F (3.51) BS03 MG ? GO:0003678 ... A0A4W6C5C5 36400570
    177128 8e2p:A (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177129 8e2p:B (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177130 8e2p:C (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177131 8e2p:D (2.72) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177132 8e2q:A (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177133 8e2q:B (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177134 8e2q:C (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177135 8e2q:D (2.34) BS03 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177136 8e2r:A (2.22) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177137 8e2r:B (2.22) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177138 8e2s:A (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177139 8e2s:B (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177140 8e2s:C (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177141 8e2s:D (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177142 8e2s:E (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177143 8e2s:F (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177144 8e2s:G (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177145 8e2s:H (2.95) BS01 ZN 3.5.4.33 GO:0002100 ... P68398 36624149
    177146 8e3d:A (2.62) BS03 ZN ? N/A O95365 36626981
    177147 8e3d:A (2.62) BS04 ZN ? N/A O95365 36626981
    177148 8e3d:A (2.62) BS05 ZN ? N/A O95365 36626981
    177149 8e3d:A (2.62) BS06 ZN ? N/A O95365 36626981
    177150 8e3d:B (2.62) BS03 ZN ? N/A O95365 36626981
    177151 8e3d:B (2.62) BS04 ZN ? N/A O95365 36626981
    177152 8e3d:B (2.62) BS05 ZN ? N/A O95365 36626981
    177153 8e3d:B (2.62) BS06 ZN ? N/A O95365 36626981
    177154 8e3d:F (2.62) BS03 ZN ? N/A O95365 36626981
    177155 8e3d:F (2.62) BS04 ZN ? N/A O95365 36626981
    177156 8e3d:F (2.62) BS05 ZN ? N/A O95365 36626981
    177157 8e3d:F (2.62) BS06 ZN ? N/A O95365 36626981
    177158 8e3e:A (2.99) BS03 ZN ? N/A O95365 36626981
    177159 8e3e:A (2.99) BS04 ZN ? N/A O95365 36626981
    177160 8e3e:A (2.99) BS05 ZN ? N/A O95365 36626981
    177161 8e3e:A (2.99) BS06 ZN ? N/A O95365 36626981
    177162 8e3e:B (2.99) BS03 ZN ? N/A O95365 36626981
    177163 8e3e:B (2.99) BS04 ZN ? N/A O95365 36626981
    177164 8e3e:B (2.99) BS05 ZN ? N/A O95365 36626981
    177165 8e3e:B (2.99) BS06 ZN ? N/A O95365 36626981
    177166 8e3e:F (2.99) BS03 ZN ? N/A O95365 36626981
    177167 8e3e:F (2.99) BS04 ZN ? N/A O95365 36626981
    177168 8e3e:F (2.99) BS05 ZN ? N/A O95365 36626981
    177169 8e3e:F (2.99) BS06 ZN ? N/A O95365 36626981
    177170 8e3f:B (6.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177171 8e3f:B (6.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177172 8e3f:B (6.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36697824
    177173 8e3i:C (2.53) BS02 ZN ? GO:0003676 ... O95639 36130077
    177174 8e3i:C (2.53) BS03 ZN ? GO:0003676 ... O95639 36130077
    177175 8e3i:C (2.53) BS04 ZN ? GO:0003676 ... O95639 36130077
    177176 8e3q:C (2.68) BS01 ZN ? GO:0003676 ... O95639 36130077
    177177 8e3s:A (3.1) BS01 ZN 2.3.2.8 GO:0004057 ... P16639 37076488
    177178 8e3t:B (2.2) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177179 8e3t:B (2.2) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177180 8e3t:D (2.2) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177181 8e3t:D (2.2) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177182 8e3u:B (1.99) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177183 8e3u:B (1.99) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177184 8e3u:D (1.99) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177185 8e3u:D (1.99) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177186 8e3v:B (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177187 8e3v:B (2.0) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177188 8e3v:D (2.0) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177189 8e3v:D (2.0) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36445204
    177190 8e40:A (3.57) BS03 ZN 3.5.4.38 GO:0000932 ... Q7YR23 36598981
    177191 8e4a:A (2.034) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 37556556
    177192 8e4l:A (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    177193 8e4l:B (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    177194 8e4l:C (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    177195 8e4l:D (3.32) BS01 CA ? GO:0005216 ... Q8R4D5 36227998
    177196 8e4m:A (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    177197 8e4m:B (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    177198 8e4m:C (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    177199 8e4m:D (3.44) BS03 CA ? GO:0005216 ... Q8R4D5 36227998
    177200 8e4s:A (2.4) BS01 MN ? GO:0003723 ... C6H0Y9 36603507

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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