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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176801 8dpj:A (2.45) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    176802 8dpn:B (2.49) BS02 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    176803 8dpn:B (2.49) BS03 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    176804 8dpn:D (2.49) BS01 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    176805 8dpn:D (2.49) BS02 FE 1.18.6.1 GO:0005524 ... P07329 35901182
    176806 8dpo:A (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    176807 8dpo:C (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    176808 8dpo:E (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    176809 8dpo:G (2.6) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 N/A
    176810 8dpr:A (2.0) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 36841831
    176811 8dq2:A (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176812 8dq2:A (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176813 8dq2:A (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176814 8dq2:B (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176815 8dq2:B (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176816 8dq2:B (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176817 8dq2:C (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176818 8dq2:C (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176819 8dq2:C (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176820 8dq2:D (1.8) BS01 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176821 8dq2:D (1.8) BS02 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176822 8dq2:D (1.8) BS03 LA ? GO:0005509 ... A0A4V2JDD3 37259003
    176823 8dq3:A (1.67) BS01 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176824 8dq3:A (1.67) BS02 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176825 8dq3:A (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176826 8dq3:B (1.67) BS01 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176827 8dq3:B (1.67) BS02 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176828 8dq3:B (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176829 8dq3:C (1.67) BS01 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176830 8dq3:C (1.67) BS02 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176831 8dq3:C (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176832 8dq3:D (1.67) BS01 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176833 8dq3:D (1.67) BS02 MN 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176834 8dq3:D (1.67) BS03 MG 1.17.4.1 GO:0004748 ... A0A142G3G1 N/A
    176835 8dq4:A (2.35) BS01 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176836 8dq4:A (2.35) BS02 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176837 8dq4:B (2.35) BS01 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176838 8dq4:B (2.35) BS02 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176839 8dq5:A (2.1) BS01 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176840 8dq5:A (2.1) BS02 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176841 8dq5:B (2.1) BS01 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176842 8dq5:B (2.1) BS02 MN 1.17.4.1 GO:0004748 ... A5FCJ5 N/A
    176843 8dq6:A (1.56) BS01 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    176844 8dq6:A (1.56) BS02 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    176845 8dq6:B (1.56) BS01 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    176846 8dq6:B (1.56) BS02 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    176847 8dq6:C (1.56) BS01 CA 5.3.2.1
    5.3.3.12    		 GO:0005125 ... Q9LU69 37988455
    176848 8dq9:A (2.8) BS01 ZN 1.1.1.193
    3.5.4.26    		 GO:0003824 ... A0A0H3FX83 N/A
    176849 8dq9:B (2.8) BS01 ZN 1.1.1.193
    3.5.4.26    		 GO:0003824 ... A0A0H3FX83 N/A
    176850 8dqb:A (2.5) BS01 ZN 1.1.1.193
    3.5.4.26    		 GO:0003824 ... A0A0H3FX83 N/A
    176851 8dqb:A (2.5) BS02 ZN 1.1.1.193
    3.5.4.26    		 GO:0003824 ... A0A0H3FX83 N/A
    176852 8dqc:A (2.7) BS01 ZN 1.1.1.193
    3.5.4.26    		 GO:0003824 ... A0A0H3FX83 N/A
    176853 8dqc:B (2.7) BS01 ZN 1.1.1.193
    3.5.4.26    		 GO:0003824 ... A0A0H3FX83 N/A
    176854 8dqf:A (2.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176855 8dqf:C (2.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176856 8dqf:E (2.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176857 8dqf:G (2.8) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176858 8dqg:A (1.49) BS02 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    176859 8dqg:D (1.49) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    176860 8dqh:A (1.52) BS02 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    176861 8dqh:D (1.52) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    176862 8dqi:D (1.54) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    176863 8dqj:D (1.54) BS03 MG ? GO:0004812 ... A0A3G3IHP7 36395426
    176864 8dqn:A (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176865 8dqn:A (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176866 8dqn:B (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176867 8dqn:B (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176868 8dqn:C (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176869 8dqn:C (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176870 8dqn:D (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176871 8dqn:D (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176872 8dqn:E (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176873 8dqn:E (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176874 8dqn:F (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176875 8dqn:F (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176876 8dqn:G (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176877 8dqn:G (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176878 8dqn:H (1.8) BS01 ZN N/A GO:0008798 ... N/A 37221236
    176879 8dqn:H (1.8) BS02 ZN N/A GO:0008798 ... N/A 37221236
    176880 8dqo:A (1.9) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    176881 8dqo:B (1.9) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    176882 8dqp:A (2.48) BS02 CA ? GO:0009805 ... Q8LF28 36737607
    176883 8dqp:B (2.48) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    176884 8dqq:A (2.33) BS02 CA ? GO:0009805 ... Q8LF28 36737607
    176885 8dqq:B (2.33) BS01 CA ? GO:0009805 ... Q8LF28 36737607
    176886 8dqr:A (2.26) BS02 CA ? GO:0009805 ... Q8LF28 36737607
    176887 8dqs:A (2.45) BS01 MN ? GO:0003723 ... C6H0Y9 N/A
    176888 8dqs:A (2.45) BS02 MN ? GO:0003723 ... C6H0Y9 N/A
    176889 8dqv:A (1.52) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    176890 8dqv:C (1.52) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    176891 8dqw:A (2.1) BS04 MG ? GO:0000077 ... P32641 35939393
    176892 8dqz:C (2.92) BS03 MG ? GO:0000077 ... P38629 35939393
    176893 8dr0:A (2.42) BS04 MG ? GO:0000278 ... P38630 35939393
    176894 8dr2:A (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176895 8dr2:C (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176896 8dr2:E (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176897 8dr2:G (2.81) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176898 8dr5:A (2.76) BS05 MG ? GO:0000278 ... P38630 35939393
    176899 8drb:A (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176900 8drb:C (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176901 8drb:E (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176902 8drb:G (2.59) BS02 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176903 8drf:A (1.7) BS02 ZN ? GO:0005506 ... P0ABE7 36154053
    176904 8drl:A (1.65) BS02 ZN ? GO:0005506 ... P0ABE7 36154053
    176905 8drm:A (1.55) BS02 ZN ? GO:0005506 ... P0ABE7 36154053
    176906 8drp:A (2.84) BS03 ZN ? GO:0003151 ... P11716 37224245
    176907 8drp:B (2.84) BS03 ZN ? GO:0003151 ... P11716 37224245
    176908 8drp:C (2.84) BS03 ZN ? GO:0003151 ... P11716 37224245
    176909 8drp:D (2.84) BS03 ZN ? GO:0003151 ... P11716 37224245
    176910 8dsf:A (1.5) BS01 ZN 2.3.2.27 N/A Q13490 36864023
    176911 8dsf:B (1.5) BS01 ZN 2.3.2.27 N/A Q13490 36864023
    176912 8dsf:C (1.5) BS02 ZN 2.3.2.27 N/A Q13490 36864023
    176913 8dsf:D (1.5) BS01 ZN 2.3.2.27 N/A Q13490 36864023
    176914 8dsj:A (2.8) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176915 8dsj:A (2.8) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176916 8dsj:K (2.8) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176917 8dsj:K (2.8) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176918 8dsl:A (2.05) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176919 8dsl:A (2.05) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176920 8dsl:B (2.05) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176921 8dsl:B (2.05) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176922 8dsn:A (2.8) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176923 8dsn:A (2.8) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176924 8dsn:K (2.8) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176925 8dsn:K (2.8) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 36880254
    176926 8dso:D (2.334) BS02 ZN 2.3.2.27 N/A Q13490 36864023
    176927 8dsw:A (2.39) BS01 MG 2.7.10.1 GO:0004672 ... P00533 N/A
    176928 8dt6:A (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    176929 8dt6:B (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    176930 8dt6:C (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    176931 8dt6:C (2.35) BS02 CA ? GO:0003677 ... A0A077EHW1 N/A
    176932 8dt6:C (2.35) BS03 CA ? GO:0003677 ... A0A077EHW1 N/A
    176933 8dt6:D (2.35) BS01 CA ? GO:0003677 ... A0A077EHW1 N/A
    176934 8dt6:D (2.35) BS02 CA ? GO:0003677 ... A0A077EHW1 N/A
    176935 8dtd:A (1.95) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 36525630
    176936 8dtd:B (1.95) BS02 ZN 2.5.1.- GO:0000287 ... Q739M9 36525630
    176937 8dte:A (2.2) BS01 MG ? GO:0046872 ... B4RRD5 N/A
    176938 8dtn:F (2.199) BS01 ZN ? N/A Q9H165 36626555
    176939 8dtp:B (2.7) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176940 8dtp:C (2.7) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176941 8dtw:A (2.33) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    176942 8dtw:A (2.33) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    176943 8dty:A (3.5) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176944 8dty:B (3.5) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176945 8dty:C (3.5) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176946 8dty:D (3.5) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176947 8dtz:A (3.6) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176948 8dtz:B (3.6) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176949 8dtz:C (3.6) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176950 8dtz:D (3.6) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    176951 8due:B (2.9) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176952 8duj:A (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    176953 8duj:A (3.7) BS04 ZN ? GO:0003151 ... P11716 37224245
    176954 8duj:D (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    176955 8duj:D (3.7) BS04 ZN ? GO:0003151 ... P11716 37224245
    176956 8duj:G (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    176957 8duj:G (3.7) BS04 ZN ? GO:0003151 ... P11716 37224245
    176958 8duj:J (3.7) BS02 CA ? GO:0003151 ... P11716 37224245
    176959 8duj:J (3.7) BS04 ZN ? GO:0003151 ... P11716 37224245
    176960 8duo:B (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176961 8duo:D (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176962 8duo:E (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176963 8duo:F (5.7) BS02 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176964 8dve:A (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    176965 8dve:A (3.84) BS04 ZN ? GO:0003151 ... P11716 37224245
    176966 8dve:D (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    176967 8dve:D (3.84) BS04 ZN ? GO:0003151 ... P11716 37224245
    176968 8dve:G (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    176969 8dve:G (3.84) BS04 ZN ? GO:0003151 ... P11716 37224245
    176970 8dve:J (3.84) BS02 CA ? GO:0003151 ... P11716 37224245
    176971 8dve:J (3.84) BS04 ZN ? GO:0003151 ... P11716 37224245
    176972 8dvf:B (3.3) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176973 8dvf:C (3.3) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176974 8dvi:B (3.2) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176975 8dvi:C (3.2) BS03 MG 3.6.4.- GO:0003677 ... P04530 37474605
    176976 8dvl:A (2.5) BS02 CA ? N/A O75581 36893429
    176977 8dvm:A (2.0) BS02 CA ? N/A O75581 36893429
    176978 8dvm:A (2.0) BS03 CA ? N/A O75581 36893429
    176979 8dvn:A (2.53) BS01 CA ? N/A O75581 36893429
    176980 8dvn:A (2.53) BS02 CA ? N/A O75581 36893429
    176981 8dvn:A (2.53) BS03 CA ? N/A O75581 36893429
    176982 8dvn:A (2.53) BS04 CA ? N/A O75581 36893429
    176983 8dvo:A (2.33) BS01 MN ? GO:0003723 ... C6H0Y9 N/A
    176984 8dvo:A (2.33) BS02 MN ? GO:0003723 ... C6H0Y9 N/A
    176985 8dvp:A (1.54) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    176986 8dvp:A (1.54) BS05 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    176987 8dvp:A (1.54) BS06 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    176988 8dvr:A (3.3) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 36272408
    176989 8dvs:A (3.0) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 36272408
    176990 8dvu:A (2.9) BS02 ZN 3.6.4.13 GO:0002230 ... O95786 36272408
    176991 8dvv:A (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    176992 8dvv:A (3.68) BS02 ZN ? GO:0001666 ... E9Q401 N/A
    176993 8dvv:B (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    176994 8dvv:B (3.68) BS02 ZN ? GO:0001666 ... E9Q401 N/A
    176995 8dvv:C (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    176996 8dvv:C (3.68) BS02 ZN ? GO:0001666 ... E9Q401 N/A
    176997 8dvv:D (3.68) BS01 CA ? GO:0001666 ... E9Q401 N/A
    176998 8dvv:D (3.68) BS02 ZN ? GO:0001666 ... E9Q401 N/A
    176999 8dvy:A (2.36) BS04 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    177000 8dvy:A (2.36) BS05 CA 3.2.2.31 GO:0000701 ... P83847 36631987
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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