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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176601 8dck:B (3.4) BS03 MG ? GO:0005524 ... Q8FDZ8 36055198
    176602 8dck:E (3.4) BS02 MG ? GO:0005524 ... Q8FDZ8 36055198
    176603 8dck:F (3.4) BS03 MG ? GO:0005524 ... Q8FDZ8 36055198
    176604 8dck:I (3.4) BS02 MG ? GO:0005524 ... Q8FDZ8 36055198
    176605 8dck:J (3.4) BS03 MG ? GO:0005524 ... Q8FDZ8 36055198
    176606 8dcm:C (2.5) BS01 CA ? GO:0005576 ... A8DS70 36951574
    176607 8dcm:C (2.5) BS02 CA ? GO:0005576 ... A8DS70 36951574
    176608 8dcm:C (2.5) BS03 CA ? GO:0005576 ... A8DS70 36951574
    176609 8dd5:A (2.58) BS02 ZN 2.3.1.48 GO:0004402 ... Q92794 N/A
    176610 8ddb:A (2.15) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176611 8ddb:A (2.15) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176612 8dde:A (2.22) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176613 8dde:A (2.22) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176614 8de6:A (3.2) BS02 CA ? GO:0005579 ... P02748 36639734
    176615 8de6:C (3.2) BS01 CA ? GO:0005579 ... P02748 36639734
    176616 8de6:G (3.2) BS03 CA ? GO:0005579 ... P02748 36639734
    176617 8de7:A (3.27) BS01 K ? GO:0005267 ... F1QAI2 36841877
    176618 8de7:A (3.27) BS02 K ? GO:0005267 ... F1QAI2 36841877
    176619 8de7:A (3.27) BS03 K ? GO:0005267 ... F1QAI2 36841877
    176620 8de7:B (3.27) BS01 K ? GO:0005267 ... F1QAI2 36841877
    176621 8de7:B (3.27) BS02 K ? GO:0005267 ... F1QAI2 36841877
    176622 8de7:B (3.27) BS03 K ? GO:0005267 ... F1QAI2 36841877
    176623 8de8:A (2.82) BS03 K ? GO:0005267 ... F1QAI2 36841877
    176624 8de8:A (2.82) BS04 K ? GO:0005267 ... F1QAI2 36841877
    176625 8de8:A (2.82) BS05 K ? GO:0005267 ... F1QAI2 36841877
    176626 8de8:A (2.82) BS06 K ? GO:0005267 ... F1QAI2 36841877
    176627 8de8:B (2.82) BS03 K ? GO:0005267 ... F1QAI2 36841877
    176628 8de8:B (2.82) BS04 K ? GO:0005267 ... F1QAI2 36841877
    176629 8de8:B (2.82) BS05 K ? GO:0005267 ... F1QAI2 36841877
    176630 8de8:B (2.82) BS06 K ? GO:0005267 ... F1QAI2 36841877
    176631 8de9:A (3.4) BS02 K ? GO:0005267 ... F1QAI2 36841877
    176632 8de9:A (3.4) BS03 K ? GO:0005267 ... F1QAI2 36841877
    176633 8de9:A (3.4) BS04 K ? GO:0005267 ... F1QAI2 36841877
    176634 8de9:B (3.4) BS02 K ? GO:0005267 ... F1QAI2 36841877
    176635 8de9:B (3.4) BS03 K ? GO:0005267 ... F1QAI2 36841877
    176636 8de9:B (3.4) BS04 K ? GO:0005267 ... F1QAI2 36841877
    176637 8dek:A (2.5) BS01 ZN ? N/A B2UKY7 36049519
    176638 8dek:B (2.5) BS01 ZN ? N/A B2UKY7 36049519
    176639 8del:A (2.56) BS01 ZN N/A GO:0005506 ... N/A 36106943
    176640 8del:B (2.56) BS01 ZN N/A GO:0005506 ... N/A 36106943
    176641 8del:C (2.56) BS01 ZN N/A GO:0005506 ... N/A 36106943
    176642 8deo:A (2.3) BS01 CA ? N/A Q5HKE8 36702253
    176643 8deo:B (2.3) BS01 CA ? N/A Q5HKE8 36702253
    176644 8dey:A (3.7) BS01 ZN ? N/A Q96SW2 36863346
    176645 8dey:C (3.7) BS02 ZN ? N/A Q9UKS7 36863346
    176646 8dey:C (3.7) BS03 ZN ? N/A Q9UKS7 36863346
    176647 8dey:D (3.7) BS01 ZN ? N/A Q96SW2 36863346
    176648 8dey:F (3.7) BS01 ZN ? N/A Q9UKS7 36863346
    176649 8dey:F (3.7) BS02 ZN ? N/A Q9UKS7 36863346
    176650 8df2:A (2.35) BS01 ZN ? N/A B2UKY7 36049519
    176651 8df2:A (2.35) BS02 CA ? N/A B2UKY7 36049519
    176652 8df2:B (2.35) BS01 ZN ? N/A B2UKY7 36049519
    176653 8df2:B (2.35) BS02 CA ? N/A B2UKY7 36049519
    176654 8df2:C (2.35) BS01 ZN ? N/A B2UKY7 36049519
    176655 8df2:C (2.35) BS02 CA ? N/A B2UKY7 36049519
    176656 8df2:D (2.35) BS01 ZN ? N/A B2UKY7 36049519
    176657 8df2:D (2.35) BS02 CA ? N/A B2UKY7 36049519
    176658 8df5:E (2.7) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 35762884
    176659 8df5:F (2.7) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 35762884
    176660 8df9:A (3.24) BS03 MG ? GO:0003677 ... Q977W1 35969036
    176661 8df9:A (3.24) BS04 MG ? GO:0003677 ... Q977W1 35969036
    176662 8df9:B (3.24) BS05 MG ? GO:0003677 ... Q977W1 35969036
    176663 8df9:B (3.24) BS06 MG ? GO:0003677 ... Q977W1 35969036
    176664 8df9:B (3.24) BS07 MG ? GO:0003677 ... Q977W1 35969036
    176665 8dfc:B (2.48) BS02 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176666 8dfc:B (2.48) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176667 8dfc:D (2.48) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176668 8dfc:D (2.48) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176669 8dfd:B (2.12) BS02 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176670 8dfd:B (2.12) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176671 8dfd:D (2.12) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176672 8dfd:D (2.12) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176673 8dfd:E (2.12) BS04 MG 1.18.6.1 GO:0005524 ... P00459 38575747
    176674 8dfd:F (2.12) BS05 MG 1.18.6.1 GO:0005524 ... P00459 38575747
    176675 8dfv:A (3.06) BS02 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176676 8dfv:A (3.06) BS03 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176677 8dfv:A (3.06) BS04 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176678 8dfv:A (3.06) BS05 CA 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176679 8dg1:B (1.95) BS01 CU ? GO:0003756 ... P0AEG4 36760747
    176680 8dg2:B (1.95) BS01 CU ? GO:0003756 ... P0AEG4 36760747
    176681 8dg5:A (3.26) BS02 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176682 8dg5:A (3.26) BS04 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176683 8dg7:A (3.32) BS03 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176684 8dg7:A (3.32) BS04 MG 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    176685 8dgd:A (1.9) BS01 ZN ? GO:0003677 ... A0A0H3GUR8 N/A
    176686 8dge:A (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    176687 8dge:A (1.89) BS02 MN N/A GO:0005975 ... N/A 37500984
    176688 8dge:B (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    176689 8dge:B (1.89) BS02 MN N/A GO:0005975 ... N/A 37500984
    176690 8dge:C (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    176691 8dge:C (1.89) BS02 MN N/A GO:0005975 ... N/A 37500984
    176692 8dge:D (1.89) BS01 CA N/A GO:0005975 ... N/A 37500984
    176693 8dge:D (1.89) BS02 MN N/A GO:0005975 ... N/A 37500984
    176694 8dgs:A (4.3) BS02 ZN 2.7.11.1 GO:0000165 ... P15056 37516774
    176695 8dgs:A (4.3) BS03 ZN 2.7.11.1 GO:0000165 ... P15056 37516774
    176696 8dgs:E (4.3) BS01 MG 3.6.5.2 GO:0003924 ... P01116 37516774
    176697 8dgt:A (3.9) BS02 ZN 2.7.11.1 GO:0000165 ... P15056 37516774
    176698 8dgt:A (3.9) BS03 ZN 2.7.11.1 GO:0000165 ... P15056 37516774
    176699 8dgt:B (3.9) BS01 MG 2.7.12.2 GO:0000165 ... Q02750 37516774
    176700 8dgt:F (3.9) BS01 MG 3.6.5.2 GO:0003924 ... P01116 37516774
    176701 8dh6:a (2.94) BS01 CA 7.1.1.9 GO:0004129 ... P00401 N/A
    176702 8dh6:a (2.94) BS02 CU 7.1.1.9 GO:0004129 ... P00401 N/A
    176703 8dh6:b (2.94) BS02 CU 7.1.1.9 GO:0004129 ... P00410 N/A
    176704 8dh6:d (2.94) BS01 ZN ? GO:0005740 ... P04037 N/A
    176705 8dhl:A (2.3) BS01 CA ? GO:0004553 ... G8UKC1 37146137
    176706 8dhl:B (2.3) BS01 CA ? GO:0004553 ... G8UKC1 37146137
    176707 8dhl:B (2.3) BS02 CA ? GO:0004553 ... G8UKC1 37146137
    176708 8dhn:A (2.4) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176709 8dhn:A (2.4) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176710 8dht:A (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    176711 8dht:B (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    176712 8dht:C (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    176713 8dht:D (1.699) BS01 MG 4.1.1.39 GO:0000287 ... O28635 36151846
    176714 8dhy:A (2.15) BS01 CU 7.5.2.6 GO:0006091 ... P60752 36435815
    176715 8di4:A (2.016) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 36624931
    176716 8di4:B (2.016) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 36624931
    176717 8dip:A (2.5) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    176718 8dip:A (2.5) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    176719 8diq:A (2.395) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 36596380
    176720 8diq:C (2.395) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 36596380
    176721 8dj2:A (1.5) BS01 CA N/A N/A N/A N/A
    176722 8dj2:B (1.5) BS01 CA N/A N/A N/A N/A
    176723 8dj2:B (1.5) BS02 CA N/A N/A N/A N/A
    176724 8dj9:A (1.54) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 36322425
    176725 8djf:A (1.55) BS01 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    176726 8djh:A (1.77) BS02 ZN ? GO:0001741 ... P63165 35871297
    176727 8djh:A (1.77) BS03 ZN ? GO:0001741 ... P63165 35871297
    176728 8djh:A (1.77) BS04 ZN ? GO:0001741 ... P63165 35871297
    176729 8dji:A (1.97) BS02 ZN ? GO:0001741 ... P63165 35871297
    176730 8dji:A (1.97) BS03 ZN ? GO:0001741 ... P63165 35871297
    176731 8djv:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176732 8djv:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176733 8djy:A (2.5) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176734 8djy:A (2.5) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176735 8djz:A (1.55) BS01 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    176736 8dk0:A (1.55) BS01 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    176737 8dk2:C (4.1) BS03 MG N/A N/A N/A 36206765
    176738 8dk2:D (4.1) BS03 MG N/A N/A N/A 36206765
    176739 8dkr:A (2.05) BS01 MG 3.1.-.- N/A A0A2K8HL37 36007626
    176740 8dkr:B (2.05) BS01 MG 3.1.-.- N/A A0A2K8HL37 36007626
    176741 8dl1:A (2.09) BS12 CA N/A GO:0005975 ... N/A 37500984
    176742 8dl1:A (2.09) BS13 MN N/A GO:0005975 ... N/A 37500984
    176743 8dl1:B (2.09) BS11 CA N/A GO:0005975 ... N/A 37500984
    176744 8dl1:B (2.09) BS12 MN N/A GO:0005975 ... N/A 37500984
    176745 8dl1:C (2.09) BS12 CA N/A GO:0005975 ... N/A 37500984
    176746 8dl1:C (2.09) BS13 MN N/A GO:0005975 ... N/A 37500984
    176747 8dl1:D (2.09) BS11 CA N/A GO:0005975 ... N/A 37500984
    176748 8dl1:D (2.09) BS12 MN N/A GO:0005975 ... N/A 37500984
    176749 8dl2:A (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    176750 8dl2:A (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    176751 8dl2:B (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    176752 8dl2:B (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    176753 8dl2:C (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    176754 8dl2:C (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    176755 8dl2:D (1.99) BS08 CA N/A GO:0005975 ... N/A 37500984
    176756 8dl2:D (1.99) BS09 MN N/A GO:0005975 ... N/A 37500984
    176757 8dl6:A (3.0) BS01 CA ? GO:0002260 ... Q9NP59 36648329
    176758 8dl8:A (3.0) BS01 CO ? GO:0002260 ... Q9NP59 36649314
    176759 8dl8:A (3.0) BS02 CO ? GO:0002260 ... Q9NP59 36649314
    176760 8dmf:A (4.0) BS01 MG ? GO:0003746 ... Q8A5S1 36472247
    176761 8dmk:G (3.7) BS01 CA ? N/A P11047 36658135
    176762 8dml:B (2.08) BS02 CA ? N/A Q87GI3 36894018
    176763 8dml:D (2.08) BS02 CA ? N/A Q87GI3 36894018
    176764 8dml:F (2.08) BS02 CA ? N/A Q87GI3 36894018
    176765 8dml:H (2.08) BS02 CA ? N/A Q87GI3 36894018
    176766 8dnp:A (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176767 8dnp:B (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176768 8dnp:C (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176769 8dnp:D (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176770 8dnp:E (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176771 8dnp:F (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176772 8dnp:G (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176773 8dnp:H (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176774 8dnp:I (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176775 8dnp:J (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176776 8dnp:K (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176777 8dnp:L (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176778 8dnp:M (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176779 8dnp:N (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176780 8dnp:O (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176781 8dnp:P (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176782 8dnp:Q (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176783 8dnp:R (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176784 8dnp:S (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176785 8dnp:T (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176786 8dnp:U (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176787 8dnp:V (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176788 8dnp:W (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176789 8dnp:X (2.69) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36450447
    176790 8dnu:A (2.73) BS01 MN 2.3.1.225
    6.3.1.2    		 GO:0001525 ... P15104 36450447
    176791 8doc:A (2.1) BS01 FE2 3.1.1.64
    5.3.3.22    		 GO:0001786 ... Q28175 37279401
    176792 8dpb:A (2.72) BS01 MG ? GO:0003924 ... C5AP93 36787360
    176793 8dpb:B (2.72) BS01 MG ? GO:0003924 ... C5AP93 36787360
    176794 8dpc:A (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176795 8dpc:C (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176796 8dpc:E (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176797 8dpc:G (2.41) BS01 ZN 4.2.1.1 GO:0004089 ... Q50940 36655133
    176798 8dpd:A (1.51) BS01 MG ? GO:0003674 ... P42212 N/A
    176799 8dpd:A (1.51) BS02 MG ? GO:0003674 ... P42212 N/A
    176800 8dpj:A (2.45) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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