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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176401 8d3r:A (3.04) BS04 CA 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    176402 8d3z:A (2.56) BS02 MN 2.4.1.- N/A A0A2K2AMS7 36849618
    176403 8d3z:B (2.56) BS02 MN 2.4.1.- N/A A0A2K2AMS7 36849618
    176404 8d40:A (3.554) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    176405 8d40:A (3.554) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    176406 8d40:A (3.554) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    176407 8d40:A (3.554) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    176408 8d40:A (3.554) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    176409 8d40:A (3.554) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    176410 8d40:A (3.554) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    176411 8d40:A (3.554) BS08 CA ? GO:0005509 ... Q9NYQ6 N/A
    176412 8d40:B (3.554) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    176413 8d40:B (3.554) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    176414 8d40:B (3.554) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    176415 8d40:B (3.554) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    176416 8d40:B (3.554) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    176417 8d40:B (3.554) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    176418 8d40:B (3.554) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    176419 8d42:A (2.91) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-
    GO:0000262 ... P54098 37202477
    176420 8d43:B (2.88) BS01 CA ? GO:0005509 ... P14314 N/A
    176421 8d43:B (2.88) BS02 CA ? GO:0005509 ... P14314 N/A
    176422 8d4a:A (2.74) BS05 ZN ? GO:0003677 ... A0A0C2W1L1 36599980
    176423 8d4a:A (2.74) BS06 MG ? GO:0003677 ... A0A0C2W1L1 36599980
    176424 8d4a:A (2.74) BS07 MG ? GO:0003677 ... A0A0C2W1L1 36599980
    176425 8d4t:N (3.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 35858451
    176426 8d4t:N (3.1) BS02 MG 7.1.1.9 GO:0004129 ... P00396 35858451
    176427 8d4t:O (3.1) BS02 CU 7.1.1.9 GO:0004129 ... P68530 35858451
    176428 8d4t:O (3.1) BS03 CU 7.1.1.9 GO:0004129 ... P68530 35858451
    176429 8d4t:S (3.1) BS01 ZN ? GO:0005740 ... P00428 35858451
    176430 8d4x:A (2.8) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    176431 8d4x:A (2.8) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    176432 8d4x:A (2.8) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    176433 8d4x:B (2.8) BS01 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    176434 8d4x:B (2.8) BS02 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    176435 8d4x:B (2.8) BS03 ZN 2.3.2.26 GO:0000209 ... O95071 37040767
    176436 8d6j:A (2.5) BS02 MG 3.1.26.n2 GO:0000340 ... Q9UKV8 37082939
    176437 8d7u:B (3.1) BS01 ZN ? GO:0005515 ... Q96SW2 36378961
    176438 8d7v:B (3.2) BS01 ZN ? GO:0005515 ... Q96SW2 36378961
    176439 8d7w:B (3.1) BS01 ZN ? GO:0005515 ... Q96SW2 36378961
    176440 8d7x:B (3.4) BS01 ZN ? GO:0005515 ... Q96SW2 36378961
    176441 8d7y:B (3.4) BS01 ZN ? GO:0005515 ... Q96SW2 36378961
    176442 8d7z:B (3.1) BS02 ZN ? GO:0005515 ... Q96SW2 36378961
    176443 8d80:B (3.6) BS02 ZN ? GO:0005515 ... Q96SW2 36378961
    176444 8d81:B (3.9) BS01 ZN ? GO:0005515 ... Q96SW2 36378961
    176445 8d86:C (3.12) BS03 MG ? GO:0003677 ... P03856 37407546
    176446 8d8k:B (3.13) BS02 MG ? GO:0003735 ... P32902 36482135
    176447 8d8l:B (2.6) BS02 MG ? GO:0003735 ... P32902 36482135
    176448 8d8m:C (3.1) BS03 CA ? GO:0003677 ... P03856 N/A
    176449 8d8n:B (3.6) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36007061
    176450 8d8n:B (3.6) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36007061
    176451 8d8n:B (3.6) BS05 ZN ? GO:0003723 ... A0A0B0EGF3 36007061
    176452 8d8n:B (3.6) BS06 ZN ? GO:0003723 ... A0A0B0EGF3 36007061
    176453 8d8o:B (3.35) BS01 ZN 3.4.24.79 GO:0004175 ... Q13219 36127359
    176454 8d94:A (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    176455 8d94:A (2.44) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    176456 8d94:B (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    176457 8d94:C (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    176458 8d94:C (2.44) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    176459 8d94:D (2.44) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 N/A
    176460 8d97:A (3.8) BS02 ZN ? GO:0003723 ... A0A0B0EGF3 36007061
    176461 8d97:A (3.8) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36007061
    176462 8d97:A (3.8) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36007061
    176463 8d98:A (1.66) BS02 ZN ? N/A F8W4B7 36073962
    176464 8d98:B (1.66) BS02 ZN ? N/A F8W4B7 36073962
    176465 8d99:A (1.79) BS01 ZN ? N/A F8W4B7 36073962
    176466 8d99:B (1.79) BS02 ZN ? N/A F8W4B7 36073962
    176467 8d9a:A (1.75) BS02 ZN ? N/A F8W4B7 36073962
    176468 8d9a:B (1.75) BS02 ZN ? N/A F8W4B7 36073962
    176469 8d9b:A (1.63) BS02 ZN ? N/A F8W4B7 36073962
    176470 8d9b:B (1.63) BS02 ZN ? N/A F8W4B7 36073962
    176471 8d9c:A (1.82) BS02 ZN ? N/A F8W4B7 36073962
    176472 8d9c:B (1.82) BS02 ZN ? N/A F8W4B7 36073962
    176473 8d9d:A (3.59) BS01 ZN 2.7.7.102 GO:0000287 ... P49642 37069376
    176474 8d9d:C (3.59) BS03 MG 2.7.7.7 GO:0000166 ... P09884 37069376
    176475 8d9d:C (3.59) BS04 ZN 2.7.7.7 GO:0000166 ... P09884 37069376
    176476 8d9d:C (3.59) BS05 ZN 2.7.7.7 GO:0000166 ... P09884 37069376
    176477 8d9e:B (3.76) BS03 ZN ? N/A A0A0B0EGF3 36007061
    176478 8d9e:B (3.76) BS04 ZN ? N/A A0A0B0EGF3 36007061
    176479 8d9e:B (3.76) BS05 ZN ? N/A A0A0B0EGF3 36007061
    176480 8d9e:B (3.76) BS06 ZN ? N/A A0A0B0EGF3 36007061
    176481 8d9f:B (2.71) BS02 ZN ? N/A A0A0B0EGF3 36007061
    176482 8d9f:B (2.71) BS03 ZN ? N/A A0A0B0EGF3 36007061
    176483 8d9f:B (2.71) BS04 ZN ? N/A A0A0B0EGF3 36007061
    176484 8d9f:B (2.71) BS05 ZN ? N/A A0A0B0EGF3 36007061
    176485 8d9g:B (2.57) BS03 ZN ? N/A A0A0B0EGF3 36007061
    176486 8d9g:B (2.57) BS04 ZN ? N/A A0A0B0EGF3 36007061
    176487 8d9g:B (2.57) BS05 ZN ? N/A A0A0B0EGF3 36007061
    176488 8d9g:B (2.57) BS06 ZN ? N/A A0A0B0EGF3 36007061
    176489 8d9h:B (3.6) BS03 ZN ? N/A A0A0B0EGF3 36007061
    176490 8d9h:B (3.6) BS04 ZN ? N/A A0A0B0EGF3 36007061
    176491 8d9h:B (3.6) BS05 ZN ? N/A A0A0B0EGF3 36007061
    176492 8d9h:B (3.6) BS06 ZN ? N/A A0A0B0EGF3 36007061
    176493 8d9i:B (3.62) BS03 ZN ? N/A A0A0B0EGF3 36007061
    176494 8d9i:B (3.62) BS04 ZN ? N/A A0A0B0EGF3 36007061
    176495 8d9j:A (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    176496 8d9j:B (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    176497 8d9j:B (2.82) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    176498 8d9j:C (2.82) BS03 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    176499 8d9j:C (2.82) BS04 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    176500 8d9j:D (2.82) BS03 CA 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    176501 8d9j:D (2.82) BS04 FE 3.1.5.- GO:0000724 ... Q9Y3Z3 37246644
    176502 8d9p:A (1.9) BS02 MN N/A N/A N/A 36213121
    176503 8d9p:A (1.9) BS03 MN N/A N/A N/A 36213121
    176504 8da0:A (2.2) BS01 ZN N/A N/A N/A N/A
    176505 8da0:A (2.2) BS02 ZN N/A N/A N/A N/A
    176506 8da0:A (2.2) BS03 ZN N/A N/A N/A N/A
    176507 8da0:B (2.2) BS01 ZN N/A N/A N/A N/A
    176508 8da0:B (2.2) BS02 ZN N/A N/A N/A N/A
    176509 8da0:C (2.2) BS02 ZN N/A N/A N/A N/A
    176510 8da0:C (2.2) BS03 ZN N/A N/A N/A N/A
    176511 8da0:D (2.2) BS02 ZN N/A N/A N/A N/A
    176512 8da0:D (2.2) BS03 ZN N/A N/A N/A N/A
    176513 8dai:A (1.14) BS03 MN 1.5.1.3 GO:0004146 ... P0ABQ4 38386706
    176514 8dal:A (2.2) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176515 8dal:A (2.2) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    176516 8dar:G (3.0) BS01 ZN ? GO:0000837 ... P33755 36574706
    176517 8dar:G (3.0) BS02 ZN ? GO:0000837 ... P33755 36574706
    176518 8das:G (3.5) BS01 ZN ? GO:0000837 ... P33755 36574706
    176519 8das:G (3.5) BS02 ZN ? GO:0000837 ... P33755 36574706
    176520 8dat:G (3.8) BS01 ZN ? GO:0000837 ... P33755 36574706
    176521 8dat:G (3.8) BS02 ZN ? GO:0000837 ... P33755 36574706
    176522 8dau:G (3.7) BS01 ZN ? GO:0000837 ... P33755 36574706
    176523 8dau:G (3.7) BS02 ZN ? GO:0000837 ... P33755 36574706
    176524 8dav:G (3.5) BS01 ZN ? GO:0000837 ... P33755 36574706
    176525 8dav:G (3.5) BS02 ZN ? GO:0000837 ... P33755 36574706
    176526 8daw:G (3.6) BS01 ZN ? GO:0000837 ... P33755 36574706
    176527 8daw:G (3.6) BS02 ZN ? GO:0000837 ... P33755 36574706
    176528 8db4:A (2.3) BS01 ZN N/A N/A N/A 36647835
    176529 8db4:B (2.3) BS01 ZN N/A N/A N/A 36647835
    176530 8db4:D (2.3) BS01 ZN N/A N/A N/A 36647835
    176531 8db4:D (2.3) BS02 ZN N/A N/A N/A 36647835
    176532 8db4:E (2.3) BS01 ZN ? GO:0045735 ... A0A445BYI5 36647835
    176533 8db4:H (2.3) BS01 ZN N/A N/A N/A 36647835
    176534 8db4:J (2.3) BS01 ZN N/A N/A N/A 36647835
    176535 8db4:J (2.3) BS02 ZN N/A N/A N/A 36647835
    176536 8db6:A (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176537 8db6:B (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176538 8db6:C (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176539 8db6:D (2.02) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176540 8db7:A (2.33) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176541 8db7:B (2.33) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176542 8db7:C (2.33) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176543 8db7:D (2.33) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176544 8db8:A (2.21) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176545 8db8:B (2.21) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176546 8db8:C (2.21) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176547 8db8:D (2.21) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176548 8db9:A (2.89) BS01 CA ? GO:0005829 ... A2EYV3 35994320
    176549 8db9:B (2.89) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176550 8db9:C (2.89) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176551 8db9:D (2.89) BS02 CA ? GO:0005829 ... A2EYV3 35994320
    176552 8dba:A (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    176553 8dba:B (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    176554 8dba:G (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    176555 8dba:H (3.5) BS02 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    176556 8dba:K (3.5) BS04 MG 2.7.11.1 GO:0005524 ... B9KWX8 36949197
    176557 8dbq:E (4.0) BS03 MG 7.1.2.2 GO:0005515 ... P0ABB4 36631659
    176558 8dbs:E (3.5) BS02 MG 7.1.2.2 GO:0005515 ... P0ABB4 36631659
    176559 8dbu:E (3.4) BS02 MG 7.1.2.2 GO:0005515 ... P0ABB4 36631659
    176560 8dbx:B (1.92) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    176561 8dbx:B (1.92) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    176562 8dbx:D (1.92) BS01 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    176563 8dbx:D (1.92) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    176564 8dby:B (2.26) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176565 8dby:B (2.26) BS03 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176566 8dby:D (2.26) BS01 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176567 8dby:D (2.26) BS02 FE 1.18.6.1 GO:0005524 ... P07329 38575747
    176568 8dc4:A (2.4) BS01 ZN ? GO:0000976 ... P04637 36197521
    176569 8dc4:B (2.4) BS01 ZN ? GO:0000976 ... P04637 36197521
    176570 8dc4:C (2.4) BS01 ZN ? GO:0000976 ... P04637 36197521
    176571 8dc4:D (2.4) BS01 ZN ? GO:0000976 ... P04637 36197521
    176572 8dc6:A (1.60001) BS01 ZN ? GO:0000976 ... P04637 36197521
    176573 8dc6:B (1.60001) BS01 ZN ? GO:0000976 ... P04637 36197521
    176574 8dc6:C (1.60001) BS01 ZN ? GO:0000976 ... P04637 36197521
    176575 8dc6:D (1.60001) BS01 ZN ? GO:0000976 ... P04637 36197521
    176576 8dc7:A (1.98701) BS01 ZN ? GO:0000976 ... P04637 36197521
    176577 8dc8:A (1.7201) BS02 ZN ? GO:0000976 ... P04637 36197521
    176578 8dc9:A (2.47) BS03 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176579 8dc9:A (2.47) BS04 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176580 8dc9:B (2.47) BS03 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176581 8dc9:B (2.47) BS04 MN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176582 8dca:A (2.43) BS04 CO 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176583 8dca:A (2.43) BS05 CO 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176584 8dca:B (2.43) BS03 CO 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176585 8dca:B (2.43) BS04 CO 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176586 8dcb:A (2.6) BS04 NI 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176587 8dcb:A (2.6) BS05 NI 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176588 8dcb:B (2.6) BS04 NI 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176589 8dcb:B (2.6) BS05 NI 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176590 8dcb:B (2.6) BS06 NI 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176591 8dcd:A (2.22) BS04 ZN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176592 8dcd:A (2.22) BS05 ZN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176593 8dcd:B (2.22) BS04 ZN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176594 8dcd:B (2.22) BS05 ZN 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176595 8dcf:A (2.42) BS03 CU 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176596 8dcf:A (2.42) BS04 CU 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176597 8dcf:B (2.42) BS03 CU 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176598 8dcf:B (2.42) BS04 CU 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176599 8dcf:B (2.42) BS05 CU 3.1.-.-
    6.5.1.8
    GO:0006396 ... O59245 36130078
    176600 8dck:A (3.4) BS02 MG ? GO:0005524 ... Q8FDZ8 36055198

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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