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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176201 8cx2:F (3.2) BS03 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176202 8cx2:F (3.2) BS04 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176203 8cx2:G (3.2) BS02 ZN ? GO:0003723 ... P69723 36754086
    176204 8cx9:A (3.5) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0006508 ... P0DTC1 36548304
    176205 8cx9:B (3.5) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0006508 ... P0DTC1 36548304
    176206 8cx9:C (3.5) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0006508 ... P0DTC1 36548304
    176207 8cx9:D (3.5) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0006508 ... P0DTC1 36548304
    176208 8cxd:B (1.8) BS02 CU ? GO:0003756 ... P0AEG4 36760747
    176209 8czk:A (1.91) BS02 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176210 8czk:B (1.91) BS03 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176211 8czl:A (1.58) BS01 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176212 8czl:B (1.58) BS01 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176213 8d02:A (1.4) BS01 CA ? GO:0003674 ... Q81TN4 37382447
    176214 8d0a:A (3.19) BS02 ZN 3.4.19.12 GO:0004843 ... Q70CQ3 N/A
    176215 8d0v:A (1.79) BS01 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176216 8d0v:B (1.79) BS01 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176217 8d16:A (3.71) BS02 MG 3.6.4.- GO:0001725 ... P68139 36289330
    176218 8d19:A (1.52) BS01 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176219 8d19:B (1.52) BS01 ZN 2.5.1.18 GO:0004364 ... O43813 36634136
    176220 8d1d:A (1.42) BS01 CA 3.1.1.101 GO:0005576 ... A0A0K8P6T7 N/A
    176221 8d1d:C (1.42) BS01 CA 3.1.1.101 GO:0005576 ... A0A0K8P6T7 N/A
    176222 8d1e:A (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176223 8d1e:B (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176224 8d1e:C (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176225 8d1e:D (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176226 8d1e:E (1.78) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176227 8d1f:A (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176228 8d1f:B (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176229 8d1f:C (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176230 8d1f:D (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176231 8d1f:E (1.82) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176232 8d1g:A (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176233 8d1g:B (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176234 8d1g:C (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176235 8d1g:D (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176236 8d1g:E (2.07) BS01 CA ? GO:0005254 ... Q8NFU1 35789156
    176237 8d1i:A (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    176238 8d1i:B (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    176239 8d1i:C (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    176240 8d1i:D (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    176241 8d1i:E (1.82) BS01 CA ? GO:0005229 ... O76090 35789156
    176242 8d1j:A (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    176243 8d1j:B (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    176244 8d1j:C (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    176245 8d1j:D (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    176246 8d1j:E (2.05) BS01 CA ? GO:0005229 ... O76090 35789156
    176247 8d1k:A (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    176248 8d1k:B (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    176249 8d1k:C (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    176250 8d1k:D (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    176251 8d1k:E (2.28) BS01 CA ? GO:0005229 ... O76090 35789156
    176252 8d1l:A (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    176253 8d1l:B (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    176254 8d1l:C (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    176255 8d1l:D (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    176256 8d1l:E (2.12) BS01 CA ? GO:0005229 ... O76090 35789156
    176257 8d1n:A (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    176258 8d1n:B (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    176259 8d1n:C (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    176260 8d1n:D (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    176261 8d1n:E (1.93) BS01 CA ? GO:0005254 ... E1BF86 35789156
    176262 8d1o:A (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    176263 8d1o:B (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    176264 8d1o:C (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    176265 8d1o:D (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    176266 8d1o:E (2.44) BS01 CA ? GO:0005254 ... O76090 35789156
    176267 8d1t:A (2.94) BS02 ZN 3.4.19.12 GO:0004843 ... Q70CQ3 N/A
    176268 8d1v:A (2.82) BS03 ZN ? GO:0051607 ... A0A401FT36 36190192
    176269 8d1v:A (2.82) BS04 ZN ? GO:0051607 ... A0A401FT36 36190192
    176270 8d1v:A (2.82) BS05 ZN ? GO:0051607 ... A0A401FT36 36190192
    176271 8d1v:A (2.82) BS06 ZN ? GO:0051607 ... A0A401FT36 36190192
    176272 8d1x:A (2.8) BS01 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... B4RJ22 N/A
    176273 8d1x:B (2.8) BS01 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... B4RJ22 N/A
    176274 8d1x:C (2.8) BS01 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... B4RJ22 N/A
    176275 8d1x:D (2.8) BS01 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... B4RJ22 N/A
    176276 8d1x:E (2.8) BS01 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... B4RJ22 N/A
    176277 8d1x:F (2.8) BS01 MN 3.4.11.1
    3.4.11.10    		 GO:0004177 ... B4RJ22 N/A
    176278 8d2k:A (2.43) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    176279 8d2k:A (2.43) BS06 MG ? GO:0003676 ... A0LWB3 38348449
    176280 8d2k:A (2.43) BS07 MG ? GO:0003676 ... A0LWB3 38348449
    176281 8d2k:A (2.43) BS08 MG ? GO:0003676 ... A0LWB3 38348449
    176282 8d2k:A (2.43) BS09 MG ? GO:0003676 ... A0LWB3 38348449
    176283 8d2l:A (2.21) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    176284 8d2l:A (2.21) BS06 MG ? GO:0003676 ... A0LWB3 38348449
    176285 8d2l:A (2.21) BS07 MG ? GO:0003676 ... A0LWB3 38348449
    176286 8d2l:A (2.21) BS08 MG ? GO:0003676 ... A0LWB3 38348449
    176287 8d2l:A (2.21) BS09 MG ? GO:0003676 ... A0LWB3 38348449
    176288 8d2l:A (2.21) BS10 MG ? GO:0003676 ... A0LWB3 38348449
    176289 8d2n:A (2.88) BS04 MG ? GO:0003676 ... A0LWB3 38348449
    176290 8d2o:A (2.66) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    176291 8d2p:A (2.78) BS03 MG ? GO:0003676 ... A0LWB3 38348449
    176292 8d2p:A (2.78) BS04 MG ? GO:0003676 ... A0LWB3 38348449
    176293 8d2p:A (2.78) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    176294 8d2p:A (2.78) BS06 MG ? GO:0003676 ... A0LWB3 38348449
    176295 8d2q:A (2.58) BS05 MG ? GO:0003676 ... A0LWB3 38348449
    176296 8d2z:A (1.85) BS01 ZN 3.5.2.6 GO:0016787 ... B4EIY5 N/A
    176297 8d2z:B (1.85) BS01 ZN 3.5.2.6 GO:0016787 ... B4EIY5 N/A
    176298 8d33:A (2.46) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    176299 8d37:A (2.65) BS03 CA 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    176300 8d3c:A (3.1) BS01 CA ? N/A P04275 35776905
    176301 8d3c:A (3.1) BS02 CA ? N/A P04275 35776905
    176302 8d3c:A (3.1) BS03 CA ? N/A P04275 35776905
    176303 8d3c:B (3.1) BS01 CA ? N/A P04275 35776905
    176304 8d3c:B (3.1) BS02 CA ? N/A P04275 35776905
    176305 8d3c:B (3.1) BS03 CA ? N/A P04275 35776905
    176306 8d3c:C (3.1) BS01 CA ? N/A P04275 35776905
    176307 8d3c:C (3.1) BS02 CA ? N/A P04275 35776905
    176308 8d3c:C (3.1) BS03 CA ? N/A P04275 35776905
    176309 8d3c:D (3.1) BS01 CA ? N/A P04275 35776905
    176310 8d3c:D (3.1) BS02 CA ? N/A P04275 35776905
    176311 8d3c:D (3.1) BS03 CA ? N/A P04275 35776905
    176312 8d3c:E (3.1) BS01 CA ? N/A P04275 35776905
    176313 8d3c:E (3.1) BS02 CA ? N/A P04275 35776905
    176314 8d3c:E (3.1) BS03 CA ? N/A P04275 35776905
    176315 8d3c:F (3.1) BS01 CA ? N/A P04275 35776905
    176316 8d3c:F (3.1) BS02 CA ? N/A P04275 35776905
    176317 8d3c:F (3.1) BS03 CA ? N/A P04275 35776905
    176318 8d3c:G (3.1) BS01 CA ? N/A P04275 35776905
    176319 8d3c:G (3.1) BS02 CA ? N/A P04275 35776905
    176320 8d3c:G (3.1) BS03 CA ? N/A P04275 35776905
    176321 8d3c:H (3.1) BS01 CA ? N/A P04275 35776905
    176322 8d3c:H (3.1) BS02 CA ? N/A P04275 35776905
    176323 8d3c:H (3.1) BS03 CA ? N/A P04275 35776905
    176324 8d3c:I (3.1) BS01 CA ? N/A P04275 35776905
    176325 8d3c:I (3.1) BS02 CA ? N/A P04275 35776905
    176326 8d3c:I (3.1) BS03 CA ? N/A P04275 35776905
    176327 8d3c:J (3.1) BS01 CA ? N/A P04275 35776905
    176328 8d3c:J (3.1) BS02 CA ? N/A P04275 35776905
    176329 8d3c:J (3.1) BS03 CA ? N/A P04275 35776905
    176330 8d3c:K (3.1) BS01 CA ? N/A P04275 35776905
    176331 8d3c:K (3.1) BS02 CA ? N/A P04275 35776905
    176332 8d3c:K (3.1) BS03 CA ? N/A P04275 35776905
    176333 8d3c:L (3.1) BS01 CA ? N/A P04275 35776905
    176334 8d3c:L (3.1) BS02 CA ? N/A P04275 35776905
    176335 8d3c:L (3.1) BS03 CA ? N/A P04275 35776905
    176336 8d3c:M (3.1) BS01 CA ? N/A P04275 35776905
    176337 8d3c:M (3.1) BS02 CA ? N/A P04275 35776905
    176338 8d3c:M (3.1) BS03 CA ? N/A P04275 35776905
    176339 8d3c:N (3.1) BS01 CA ? N/A P04275 35776905
    176340 8d3c:N (3.1) BS02 CA ? N/A P04275 35776905
    176341 8d3c:N (3.1) BS03 CA ? N/A P04275 35776905
    176342 8d3c:O (3.1) BS01 CA ? N/A P04275 35776905
    176343 8d3c:O (3.1) BS02 CA ? N/A P04275 35776905
    176344 8d3c:O (3.1) BS03 CA ? N/A P04275 35776905
    176345 8d3c:P (3.1) BS01 CA ? N/A P04275 35776905
    176346 8d3c:P (3.1) BS02 CA ? N/A P04275 35776905
    176347 8d3c:P (3.1) BS03 CA ? N/A P04275 35776905
    176348 8d3d:A (3.2) BS01 CA ? N/A P04275 35776905
    176349 8d3d:A (3.2) BS02 CA ? N/A P04275 35776905
    176350 8d3d:A (3.2) BS03 CA ? N/A P04275 35776905
    176351 8d3d:B (3.2) BS01 CA ? N/A P04275 35776905
    176352 8d3d:B (3.2) BS02 CA ? N/A P04275 35776905
    176353 8d3d:B (3.2) BS03 CA ? N/A P04275 35776905
    176354 8d3d:C (3.2) BS01 CA ? N/A P04275 35776905
    176355 8d3d:C (3.2) BS02 CA ? N/A P04275 35776905
    176356 8d3d:C (3.2) BS03 CA ? N/A P04275 35776905
    176357 8d3d:D (3.2) BS01 CA ? N/A P04275 35776905
    176358 8d3d:D (3.2) BS02 CA ? N/A P04275 35776905
    176359 8d3d:D (3.2) BS03 CA ? N/A P04275 35776905
    176360 8d3d:E (3.2) BS01 CA ? N/A P04275 35776905
    176361 8d3d:E (3.2) BS02 CA ? N/A P04275 35776905
    176362 8d3d:E (3.2) BS03 CA ? N/A P04275 35776905
    176363 8d3d:F (3.2) BS01 CA ? N/A P04275 35776905
    176364 8d3d:F (3.2) BS02 CA ? N/A P04275 35776905
    176365 8d3d:F (3.2) BS03 CA ? N/A P04275 35776905
    176366 8d3d:G (3.2) BS01 CA ? N/A P04275 35776905
    176367 8d3d:G (3.2) BS02 CA ? N/A P04275 35776905
    176368 8d3d:G (3.2) BS03 CA ? N/A P04275 35776905
    176369 8d3d:H (3.2) BS01 CA ? N/A P04275 35776905
    176370 8d3d:H (3.2) BS02 CA ? N/A P04275 35776905
    176371 8d3d:H (3.2) BS03 CA ? N/A P04275 35776905
    176372 8d3d:I (3.2) BS01 CA ? N/A P04275 35776905
    176373 8d3d:I (3.2) BS02 CA ? N/A P04275 35776905
    176374 8d3d:I (3.2) BS03 CA ? N/A P04275 35776905
    176375 8d3d:J (3.2) BS01 CA ? N/A P04275 35776905
    176376 8d3d:J (3.2) BS02 CA ? N/A P04275 35776905
    176377 8d3d:J (3.2) BS03 CA ? N/A P04275 35776905
    176378 8d3d:K (3.2) BS01 CA ? N/A P04275 35776905
    176379 8d3d:K (3.2) BS02 CA ? N/A P04275 35776905
    176380 8d3d:K (3.2) BS03 CA ? N/A P04275 35776905
    176381 8d3d:L (3.2) BS01 CA ? N/A P04275 35776905
    176382 8d3d:L (3.2) BS02 CA ? N/A P04275 35776905
    176383 8d3d:L (3.2) BS03 CA ? N/A P04275 35776905
    176384 8d3d:M (3.2) BS01 CA ? N/A P04275 35776905
    176385 8d3d:M (3.2) BS02 CA ? N/A P04275 35776905
    176386 8d3d:M (3.2) BS03 CA ? N/A P04275 35776905
    176387 8d3d:N (3.2) BS01 CA ? N/A P04275 35776905
    176388 8d3d:N (3.2) BS02 CA ? N/A P04275 35776905
    176389 8d3d:N (3.2) BS03 CA ? N/A P04275 35776905
    176390 8d3d:O (3.2) BS01 CA ? N/A P04275 35776905
    176391 8d3d:O (3.2) BS02 CA ? N/A P04275 35776905
    176392 8d3d:O (3.2) BS03 CA ? N/A P04275 35776905
    176393 8d3d:P (3.2) BS01 CA ? N/A P04275 35776905
    176394 8d3d:P (3.2) BS02 CA ? N/A P04275 35776905
    176395 8d3d:P (3.2) BS03 CA ? N/A P04275 35776905
    176396 8d3l:I (3.49) BS03 MN 3.1.12.1 GO:0004527 ... A0A4Y7WTW2 36272411
    176397 8d3l:J (3.49) BS03 MN 3.1.12.1 GO:0004527 ... A0A4Y7WTW2 36272411
    176398 8d3m:I (3.41) BS02 MN 3.1.12.1 GO:0004527 ... A0A4Y7WTW2 36272411
    176399 8d3p:I (4.26) BS04 MN 3.1.12.1 GO:0004527 ... A0A4Y7WTW2 36272411
    176400 8d3q:I (3.9) BS03 MN 3.1.12.1 GO:0004527 ... A0A4Y7WTW2 36272411
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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