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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176001 8cvk:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    176002 8cvk:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    176003 8cvk:1k (2.5) BS02 MG ? GO:0003735 ... P80376 36316410
    176004 8cvk:1l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    176005 8cvk:1m (2.5) BS04 MG ? GO:0000049 ... P80377 36316410
    176006 8cvk:1n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    176007 8cvk:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    176008 8cvk:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    176009 8cvk:25 (2.5) BS02 MG ? GO:0003735 ... P80339 36316410
    176010 8cvk:25 (2.5) BS03 ZN ? GO:0003735 ... P80339 36316410
    176011 8cvk:26 (2.5) BS02 MG ? GO:0000049 ... P35871 36316410
    176012 8cvk:26 (2.5) BS03 ZN ? GO:0000049 ... P35871 36316410
    176013 8cvk:28 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    176014 8cvk:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    176015 8cvk:2D (2.5) BS03 MG ? GO:0002181 ... P60405 36316410
    176016 8cvk:2D (2.5) BS04 MG ? GO:0002181 ... P60405 36316410
    176017 8cvk:2D (2.5) BS05 MG ? GO:0002181 ... P60405 36316410
    176018 8cvk:2D (2.5) BS06 MG ? GO:0002181 ... P60405 36316410
    176019 8cvk:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    176020 8cvk:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    176021 8cvk:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    176022 8cvk:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    176023 8cvk:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    176024 8cvk:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    176025 8cvk:2Q (2.5) BS05 MG ? GO:0000049 ... P60489 36316410
    176026 8cvk:2Q (2.5) BS06 MG ? GO:0000049 ... P60489 36316410
    176027 8cvk:2T (2.5) BS03 MG ? GO:0003735 ... P60490 36316410
    176028 8cvk:2U (2.5) BS02 MG ? GO:0000027 ... P60491 36316410
    176029 8cvk:2V (2.5) BS02 MG ? GO:0003723 ... P60492 36316410
    176030 8cvk:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    176031 8cvk:2W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    176032 8cvk:2X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    176033 8cvk:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 36316410
    176034 8cvk:2Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    176035 8cvk:2d (2.5) BS02 MG ? GO:0003723 ... P80373 36316410
    176036 8cvk:2e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    176037 8cvk:2g (2.5) BS03 MG ? GO:0000028 ... P17291 36316410
    176038 8cvk:2k (2.5) BS02 MG ? GO:0003735 ... P80376 36316410
    176039 8cvk:2l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    176040 8cvk:2l (2.5) BS04 MG ? GO:0000049 ... Q5SHN3 36316410
    176041 8cvk:2l (2.5) BS05 MG ? GO:0000049 ... Q5SHN3 36316410
    176042 8cvk:2n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    176043 8cvk:2q (2.5) BS02 MG ? GO:0003735 ... P0DOY7 36316410
    176044 8cvk:2q (2.5) BS03 MG ? GO:0003735 ... P0DOY7 36316410
    176045 8cvl:10 (2.3) BS04 MG ? GO:0003735 ... P60493 36316410
    176046 8cvl:10 (2.3) BS05 MG ? GO:0003735 ... P60493 36316410
    176047 8cvl:10 (2.3) BS06 MG ? GO:0003735 ... P60493 36316410
    176048 8cvl:11 (2.3) BS03 MG ? GO:0003735 ... P60494 36316410
    176049 8cvl:11 (2.3) BS04 MG ? GO:0003735 ... P60494 36316410
    176050 8cvl:12 (2.3) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    176051 8cvl:13 (2.3) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    176052 8cvl:13 (2.3) BS04 MG ? GO:0003735 ... Q5SHQ6 36316410
    176053 8cvl:14 (2.3) BS03 MG ? GO:0003735 ... Q5SJE1 36316410
    176054 8cvl:14 (2.3) BS04 ZN ? GO:0003735 ... Q5SJE1 36316410
    176055 8cvl:15 (2.3) BS02 MG ? GO:0003735 ... P80339 36316410
    176056 8cvl:15 (2.3) BS03 ZN ? GO:0003735 ... P80339 36316410
    176057 8cvl:16 (2.3) BS02 MG ? GO:0000049 ... P35871 36316410
    176058 8cvl:16 (2.3) BS03 ZN ? GO:0000049 ... P35871 36316410
    176059 8cvl:17 (2.3) BS02 MG ? GO:0003735 ... P80340 36316410
    176060 8cvl:17 (2.3) BS03 MG ? GO:0003735 ... P80340 36316410
    176061 8cvl:18 (2.3) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    176062 8cvl:18 (2.3) BS03 MG ? GO:0003735 ... Q5SKU1 36316410
    176063 8cvl:18 (2.3) BS04 MG ? GO:0003735 ... Q5SKU1 36316410
    176064 8cvl:19 (2.3) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    176065 8cvl:1D (2.3) BS03 MG ? GO:0002181 ... P60405 36316410
    176066 8cvl:1D (2.3) BS04 MG ? GO:0002181 ... P60405 36316410
    176067 8cvl:1D (2.3) BS05 MG ? GO:0002181 ... P60405 36316410
    176068 8cvl:1D (2.3) BS06 MG ? GO:0002181 ... P60405 36316410
    176069 8cvl:1D (2.3) BS07 MG ? GO:0002181 ... P60405 36316410
    176070 8cvl:1D (2.3) BS08 MG ? GO:0002181 ... P60405 36316410
    176071 8cvl:1D (2.3) BS09 MG ? GO:0002181 ... P60405 36316410
    176072 8cvl:1D (2.3) BS10 MG ? GO:0002181 ... P60405 36316410
    176073 8cvl:1D (2.3) BS11 MG ? GO:0002181 ... P60405 36316410
    176074 8cvl:1D (2.3) BS12 MG ? GO:0002181 ... P60405 36316410
    176075 8cvl:1E (2.3) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    176076 8cvl:1E (2.3) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    176077 8cvl:1E (2.3) BS04 MG ? GO:0003735 ... Q5SHN8 36316410
    176078 8cvl:1E (2.3) BS05 MG ? GO:0003735 ... Q5SHN8 36316410
    176079 8cvl:1F (2.3) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    176080 8cvl:1F (2.3) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    176081 8cvl:1F (2.3) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    176082 8cvl:1F (2.3) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    176083 8cvl:1F (2.3) BS06 MG ? GO:0003735 ... Q5SHN9 36316410
    176084 8cvl:1F (2.3) BS07 MG ? GO:0003735 ... Q5SHN9 36316410
    176085 8cvl:1F (2.3) BS08 MG ? GO:0003735 ... Q5SHN9 36316410
    176086 8cvl:1F (2.3) BS09 MG ? GO:0003735 ... Q5SHN9 36316410
    176087 8cvl:1G (2.3) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    176088 8cvl:1G (2.3) BS05 MG ? GO:0000049 ... Q5SHQ0 36316410
    176089 8cvl:1N (2.3) BS02 MG ? GO:0003729 ... P60488 36316410
    176090 8cvl:1N (2.3) BS03 MG ? GO:0003729 ... P60488 36316410
    176091 8cvl:1N (2.3) BS04 MG ? GO:0003729 ... P60488 36316410
    176092 8cvl:1N (2.3) BS05 MG ? GO:0003729 ... P60488 36316410
    176093 8cvl:1O (2.3) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    176094 8cvl:1O (2.3) BS04 MG ? GO:0003735 ... Q5SHP8 36316410
    176095 8cvl:1O (2.3) BS05 MG ? GO:0003735 ... Q5SHP8 36316410
    176096 8cvl:1P (2.3) BS02 MG ? GO:0003735 ... Q5SHQ7 36316410
    176097 8cvl:1P (2.3) BS03 MG ? GO:0003735 ... Q5SHQ7 36316410
    176098 8cvl:1P (2.3) BS04 MG ? GO:0003735 ... Q5SHQ7 36316410
    176099 8cvl:1P (2.3) BS05 MG ? GO:0003735 ... Q5SHQ7 36316410
    176100 8cvl:1Q (2.3) BS05 MG ? GO:0000049 ... P60489 36316410
    176101 8cvl:1Q (2.3) BS06 MG ? GO:0000049 ... P60489 36316410
    176102 8cvl:1Q (2.3) BS07 MG ? GO:0000049 ... P60489 36316410
    176103 8cvl:1Q (2.3) BS08 MG ? GO:0000049 ... P60489 36316410
    176104 8cvl:1Q (2.3) BS09 MG ? GO:0000049 ... P60489 36316410
    176105 8cvl:1R (2.3) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    176106 8cvl:1R (2.3) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    176107 8cvl:1R (2.3) BS04 MG ? GO:0003735 ... Q9Z9H5 36316410
    176108 8cvl:1S (2.3) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    176109 8cvl:1S (2.3) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    176110 8cvl:1U (2.3) BS02 MG ? GO:0000027 ... P60491 36316410
    176111 8cvl:1U (2.3) BS03 MG ? GO:0000027 ... P60491 36316410
    176112 8cvl:1U (2.3) BS04 MG ? GO:0000027 ... P60491 36316410
    176113 8cvl:1U (2.3) BS05 MG ? GO:0000027 ... P60491 36316410
    176114 8cvl:1U (2.3) BS06 MG ? GO:0000027 ... P60491 36316410
    176115 8cvl:1U (2.3) BS07 MG ? GO:0000027 ... P60491 36316410
    176116 8cvl:1V (2.3) BS02 MG ? GO:0003723 ... P60492 36316410
    176117 8cvl:1V (2.3) BS03 MG ? GO:0003723 ... P60492 36316410
    176118 8cvl:1V (2.3) BS04 MG ? GO:0003723 ... P60492 36316410
    176119 8cvl:1V (2.3) BS05 MG ? GO:0003723 ... P60492 36316410
    176120 8cvl:1V (2.3) BS06 MG ? GO:0003723 ... P60492 36316410
    176121 8cvl:1W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    176122 8cvl:1W (2.3) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    176123 8cvl:1W (2.3) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    176124 8cvl:1W (2.3) BS05 MG ? GO:0003735 ... Q5SHP3 36316410
    176125 8cvl:1X (2.3) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    176126 8cvl:1X (2.3) BS03 MG ? GO:0000027 ... Q5SHP0 36316410
    176127 8cvl:1X (2.3) BS04 MG ? GO:0000027 ... Q5SHP0 36316410
    176128 8cvl:1X (2.3) BS05 MG ? GO:0000027 ... Q5SHP0 36316410
    176129 8cvl:1X (2.3) BS06 MG ? GO:0000027 ... Q5SHP0 36316410
    176130 8cvl:1Y (2.3) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    176131 8cvl:1Y (2.3) BS03 ZN ? GO:0003723 ... Q5SHP9 36316410
    176132 8cvl:1Z (2.3) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    176133 8cvl:1e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    176134 8cvl:1e (2.3) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    176135 8cvl:1f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    176136 8cvl:1k (2.3) BS02 MG ? GO:0003735 ... P80376 36316410
    176137 8cvl:1l (2.3) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    176138 8cvl:1m (2.3) BS04 MG ? GO:0000049 ... P80377 36316410
    176139 8cvl:1n (2.3) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    176140 8cvl:1t (2.3) BS02 MG ? GO:0003723 ... P80380 36316410
    176141 8cvl:21 (2.3) BS03 MG ? GO:0003735 ... P60494 36316410
    176142 8cvl:23 (2.3) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    176143 8cvl:24 (2.3) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    176144 8cvl:25 (2.3) BS02 ZN ? GO:0003735 ... P80339 36316410
    176145 8cvl:26 (2.3) BS02 MG ? GO:0000049 ... P35871 36316410
    176146 8cvl:26 (2.3) BS03 ZN ? GO:0000049 ... P35871 36316410
    176147 8cvl:27 (2.3) BS02 MG ? GO:0003735 ... P80340 36316410
    176148 8cvl:29 (2.3) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    176149 8cvl:2D (2.3) BS03 MG ? GO:0002181 ... P60405 36316410
    176150 8cvl:2D (2.3) BS04 MG ? GO:0002181 ... P60405 36316410
    176151 8cvl:2D (2.3) BS05 MG ? GO:0002181 ... P60405 36316410
    176152 8cvl:2D (2.3) BS06 MG ? GO:0002181 ... P60405 36316410
    176153 8cvl:2D (2.3) BS07 MG ? GO:0002181 ... P60405 36316410
    176154 8cvl:2E (2.3) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    176155 8cvl:2F (2.3) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    176156 8cvl:2F (2.3) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    176157 8cvl:2F (2.3) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    176158 8cvl:2F (2.3) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    176159 8cvl:2G (2.3) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    176160 8cvl:2Q (2.3) BS05 MG ? GO:0000049 ... P60489 36316410
    176161 8cvl:2Q (2.3) BS06 MG ? GO:0000049 ... P60489 36316410
    176162 8cvl:2U (2.3) BS02 MG ? GO:0000027 ... P60491 36316410
    176163 8cvl:2V (2.3) BS02 MG ? GO:0003723 ... P60492 36316410
    176164 8cvl:2W (2.3) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    176165 8cvl:2X (2.3) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    176166 8cvl:2Y (2.3) BS02 ZN ? GO:0003723 ... Q5SHP9 36316410
    176167 8cvl:2Z (2.3) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    176168 8cvl:2e (2.3) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    176169 8cvl:2f (2.3) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    176170 8cvl:2k (2.3) BS02 MG ? GO:0003735 ... P80376 36316410
    176171 8cvl:2l (2.3) BS02 MG ? GO:0000049 ... Q5SHN3 36316410
    176172 8cvl:2l (2.3) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    176173 8cvl:2l (2.3) BS04 MG ? GO:0000049 ... Q5SHN3 36316410
    176174 8cvl:2n (2.3) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    176175 8cvl:2q (2.3) BS02 MG ? GO:0003735 ... P0DOY7 36316410
    176176 8cvl:2r (2.3) BS02 MG ? GO:0003735 ... Q5SLQ0 36316410
    176177 8cvm:0 (2.66) BS02 ZN ? GO:0003735 ... Q6A6J5 36864821
    176178 8cvm:1 (2.66) BS02 MG ? GO:0003735 ... Q6A5A1 36864821
    176179 8cvm:4 (2.66) BS02 ZN ? GO:0003735 ... Q6A8B4 36864821
    176180 8cvm:c (2.66) BS02 MG ? GO:0002181 ... Q6A6M9 36864821
    176181 8cvm:k (2.66) BS02 MG ? GO:0003735 ... Q6A6P5 36864821
    176182 8cvm:w (2.66) BS02 ZN ? GO:0003735 ... A0A2B7I7B7 36864821
    176183 8cvm:z (2.66) BS02 ZN ? GO:0003735 ... A0A2B7I771 36864821
    176184 8cvo:S (2.95) BS02 ZN ? GO:0003735 ... Q6A6N9 36864821
    176185 8cvp:B (3.4) BS01 ZN ? GO:0005515 ... Q96SW2 36378961
    176186 8cvt:c (3.0) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35858375
    176187 8cww:P (2.74) BS03 ZN ? N/A P20050 38332377
    176188 8cww:P (2.74) BS04 ZN ? N/A P20050 38332377
    176189 8cx0:A (2.7) BS02 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176190 8cx0:A (2.7) BS03 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176191 8cx0:B (2.7) BS02 ZN ? GO:0003723 ... P69723 36754086
    176192 8cx1:A (3.3) BS03 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176193 8cx1:A (3.3) BS04 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176194 8cx1:B (3.3) BS02 ZN ? GO:0003723 ... P69723 36754086
    176195 8cx1:F (3.3) BS03 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176196 8cx1:F (3.3) BS04 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176197 8cx1:G (3.3) BS02 ZN ? GO:0003723 ... P69723 36754086
    176198 8cx2:A (3.2) BS03 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176199 8cx2:A (3.2) BS04 ZN 3.5.4.38 GO:0000932 ... Q9HC16 36754086
    176200 8cx2:B (3.2) BS02 ZN ? GO:0003723 ... P69723 36754086
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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