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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175801 8cvj:1D (2.4) BS03 MG ? GO:0002181 ... P60405 36316410
    175802 8cvj:1D (2.4) BS04 MG ? GO:0002181 ... P60405 36316410
    175803 8cvj:1D (2.4) BS05 MG ? GO:0002181 ... P60405 36316410
    175804 8cvj:1D (2.4) BS06 MG ? GO:0002181 ... P60405 36316410
    175805 8cvj:1D (2.4) BS07 MG ? GO:0002181 ... P60405 36316410
    175806 8cvj:1D (2.4) BS08 MG ? GO:0002181 ... P60405 36316410
    175807 8cvj:1D (2.4) BS09 MG ? GO:0002181 ... P60405 36316410
    175808 8cvj:1D (2.4) BS10 MG ? GO:0002181 ... P60405 36316410
    175809 8cvj:1D (2.4) BS11 MG ? GO:0002181 ... P60405 36316410
    175810 8cvj:1D (2.4) BS12 MG ? GO:0002181 ... P60405 36316410
    175811 8cvj:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    175812 8cvj:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    175813 8cvj:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 36316410
    175814 8cvj:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    175815 8cvj:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    175816 8cvj:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    175817 8cvj:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    175818 8cvj:1F (2.4) BS06 MG ? GO:0003735 ... Q5SHN9 36316410
    175819 8cvj:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 36316410
    175820 8cvj:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 36316410
    175821 8cvj:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 36316410
    175822 8cvj:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 36316410
    175823 8cvj:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    175824 8cvj:1G (2.4) BS05 MG ? GO:0000049 ... Q5SHQ0 36316410
    175825 8cvj:1I (2.4) BS02 MG ? GO:0003735 ... Q5SLQ1 36316410
    175826 8cvj:1N (2.4) BS02 MG ? GO:0003729 ... P60488 36316410
    175827 8cvj:1N (2.4) BS03 MG ? GO:0003729 ... P60488 36316410
    175828 8cvj:1N (2.4) BS04 MG ? GO:0003729 ... P60488 36316410
    175829 8cvj:1O (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    175830 8cvj:1O (2.4) BS04 MG ? GO:0003735 ... Q5SHP8 36316410
    175831 8cvj:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 36316410
    175832 8cvj:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 36316410
    175833 8cvj:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 36316410
    175834 8cvj:1P (2.4) BS05 MG ? GO:0003735 ... Q5SHQ7 36316410
    175835 8cvj:1P (2.4) BS06 MG ? GO:0003735 ... Q5SHQ7 36316410
    175836 8cvj:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 36316410
    175837 8cvj:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 36316410
    175838 8cvj:1Q (2.4) BS07 MG ? GO:0000049 ... P60489 36316410
    175839 8cvj:1Q (2.4) BS08 MG ? GO:0000049 ... P60489 36316410
    175840 8cvj:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    175841 8cvj:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    175842 8cvj:1S (2.4) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    175843 8cvj:1S (2.4) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    175844 8cvj:1U (2.4) BS02 MG ? GO:0000027 ... P60491 36316410
    175845 8cvj:1U (2.4) BS03 MG ? GO:0000027 ... P60491 36316410
    175846 8cvj:1U (2.4) BS04 MG ? GO:0000027 ... P60491 36316410
    175847 8cvj:1U (2.4) BS05 MG ? GO:0000027 ... P60491 36316410
    175848 8cvj:1U (2.4) BS06 MG ? GO:0000027 ... P60491 36316410
    175849 8cvj:1U (2.4) BS07 MG ? GO:0000027 ... P60491 36316410
    175850 8cvj:1U (2.4) BS08 MG ? GO:0000027 ... P60491 36316410
    175851 8cvj:1U (2.4) BS09 MG ? GO:0000027 ... P60491 36316410
    175852 8cvj:1V (2.4) BS02 MG ? GO:0003723 ... P60492 36316410
    175853 8cvj:1V (2.4) BS03 MG ? GO:0003723 ... P60492 36316410
    175854 8cvj:1V (2.4) BS04 MG ? GO:0003723 ... P60492 36316410
    175855 8cvj:1V (2.4) BS05 MG ? GO:0003723 ... P60492 36316410
    175856 8cvj:1V (2.4) BS06 MG ? GO:0003723 ... P60492 36316410
    175857 8cvj:1V (2.4) BS07 MG ? GO:0003723 ... P60492 36316410
    175858 8cvj:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    175859 8cvj:1W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    175860 8cvj:1W (2.4) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    175861 8cvj:1X (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    175862 8cvj:1X (2.4) BS03 MG ? GO:0000027 ... Q5SHP0 36316410
    175863 8cvj:1X (2.4) BS04 MG ? GO:0000027 ... Q5SHP0 36316410
    175864 8cvj:1Y (2.4) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    175865 8cvj:1Y (2.4) BS03 ZN ? GO:0003723 ... Q5SHP9 36316410
    175866 8cvj:1Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    175867 8cvj:1e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    175868 8cvj:1e (2.4) BS03 MG ? GO:0003723 ... Q5SHQ5 36316410
    175869 8cvj:1f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    175870 8cvj:1k (2.4) BS02 MG ? GO:0003735 ... P80376 36316410
    175871 8cvj:1l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    175872 8cvj:1m (2.4) BS04 MG ? GO:0000049 ... P80377 36316410
    175873 8cvj:1n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    175874 8cvj:20 (2.4) BS04 MG ? GO:0003735 ... P60493 36316410
    175875 8cvj:21 (2.4) BS03 MG ? GO:0003735 ... P60494 36316410
    175876 8cvj:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    175877 8cvj:24 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    175878 8cvj:25 (2.4) BS02 MG ? GO:0003735 ... P80339 36316410
    175879 8cvj:25 (2.4) BS03 MG ? GO:0003735 ... P80339 36316410
    175880 8cvj:25 (2.4) BS04 ZN ? GO:0003735 ... P80339 36316410
    175881 8cvj:26 (2.4) BS02 MG ? GO:0000049 ... P35871 36316410
    175882 8cvj:26 (2.4) BS03 ZN ? GO:0000049 ... P35871 36316410
    175883 8cvj:28 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    175884 8cvj:29 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    175885 8cvj:2D (2.4) BS03 MG ? GO:0002181 ... P60405 36316410
    175886 8cvj:2D (2.4) BS04 MG ? GO:0002181 ... P60405 36316410
    175887 8cvj:2D (2.4) BS05 MG ? GO:0002181 ... P60405 36316410
    175888 8cvj:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    175889 8cvj:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    175890 8cvj:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    175891 8cvj:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    175892 8cvj:2F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    175893 8cvj:2G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    175894 8cvj:2O (2.4) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    175895 8cvj:2Q (2.4) BS05 MG ? GO:0000049 ... P60489 36316410
    175896 8cvj:2Q (2.4) BS06 MG ? GO:0000049 ... P60489 36316410
    175897 8cvj:2U (2.4) BS02 MG ? GO:0000027 ... P60491 36316410
    175898 8cvj:2V (2.4) BS02 MG ? GO:0003723 ... P60492 36316410
    175899 8cvj:2W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    175900 8cvj:2W (2.4) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    175901 8cvj:2X (2.4) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    175902 8cvj:2Y (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 36316410
    175903 8cvj:2Z (2.4) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    175904 8cvj:2e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 36316410
    175905 8cvj:2f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 36316410
    175906 8cvj:2g (2.4) BS03 MG ? GO:0000028 ... P17291 36316410
    175907 8cvj:2k (2.4) BS02 MG ? GO:0003735 ... P80376 36316410
    175908 8cvj:2l (2.4) BS03 MG ? GO:0000049 ... Q5SHN3 36316410
    175909 8cvj:2l (2.4) BS04 MG ? GO:0000049 ... Q5SHN3 36316410
    175910 8cvj:2n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 36316410
    175911 8cvj:2q (2.4) BS02 MG ? GO:0003735 ... P0DOY7 36316410
    175912 8cvj:2q (2.4) BS03 MG ? GO:0003735 ... P0DOY7 36316410
    175913 8cvj:2r (2.4) BS02 MG ? GO:0003735 ... Q5SLQ0 36316410
    175914 8cvj:2t (2.4) BS02 MG ? GO:0003723 ... P80380 36316410
    175915 8cvk:10 (2.5) BS04 MG ? GO:0003735 ... P60493 36316410
    175916 8cvk:10 (2.5) BS05 MG ? GO:0003735 ... P60493 36316410
    175917 8cvk:11 (2.5) BS03 MG ? GO:0003735 ... P60494 36316410
    175918 8cvk:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    175919 8cvk:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    175920 8cvk:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 36316410
    175921 8cvk:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    175922 8cvk:15 (2.5) BS02 MG ? GO:0003735 ... P80339 36316410
    175923 8cvk:15 (2.5) BS03 MG ? GO:0003735 ... P80339 36316410
    175924 8cvk:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 36316410
    175925 8cvk:16 (2.5) BS02 MG ? GO:0000049 ... P35871 36316410
    175926 8cvk:16 (2.5) BS03 ZN ? GO:0000049 ... P35871 36316410
    175927 8cvk:17 (2.5) BS02 MG ? GO:0003735 ... P80340 36316410
    175928 8cvk:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    175929 8cvk:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 36316410
    175930 8cvk:18 (2.5) BS04 MG ? GO:0003735 ... Q5SKU1 36316410
    175931 8cvk:18 (2.5) BS05 MG ? GO:0003735 ... Q5SKU1 36316410
    175932 8cvk:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    175933 8cvk:1D (2.5) BS03 MG ? GO:0002181 ... P60405 36316410
    175934 8cvk:1D (2.5) BS04 MG ? GO:0002181 ... P60405 36316410
    175935 8cvk:1D (2.5) BS05 MG ? GO:0002181 ... P60405 36316410
    175936 8cvk:1D (2.5) BS06 MG ? GO:0002181 ... P60405 36316410
    175937 8cvk:1D (2.5) BS07 MG ? GO:0002181 ... P60405 36316410
    175938 8cvk:1D (2.5) BS08 MG ? GO:0002181 ... P60405 36316410
    175939 8cvk:1D (2.5) BS09 MG ? GO:0002181 ... P60405 36316410
    175940 8cvk:1D (2.5) BS10 MG ? GO:0002181 ... P60405 36316410
    175941 8cvk:1D (2.5) BS11 MG ? GO:0002181 ... P60405 36316410
    175942 8cvk:1D (2.5) BS12 MG ? GO:0002181 ... P60405 36316410
    175943 8cvk:1D (2.5) BS13 MG ? GO:0002181 ... P60405 36316410
    175944 8cvk:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 36316410
    175945 8cvk:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 36316410
    175946 8cvk:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 36316410
    175947 8cvk:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 36316410
    175948 8cvk:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 36316410
    175949 8cvk:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 36316410
    175950 8cvk:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 36316410
    175951 8cvk:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 36316410
    175952 8cvk:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 36316410
    175953 8cvk:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 36316410
    175954 8cvk:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 36316410
    175955 8cvk:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 36316410
    175956 8cvk:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 36316410
    175957 8cvk:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 36316410
    175958 8cvk:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 36316410
    175959 8cvk:1I (2.5) BS02 MG ? GO:0003735 ... Q5SLQ1 36316410
    175960 8cvk:1N (2.5) BS02 MG ? GO:0003729 ... P60488 36316410
    175961 8cvk:1N (2.5) BS03 MG ? GO:0003729 ... P60488 36316410
    175962 8cvk:1N (2.5) BS04 MG ? GO:0003729 ... P60488 36316410
    175963 8cvk:1N (2.5) BS05 MG ? GO:0003729 ... P60488 36316410
    175964 8cvk:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 36316410
    175965 8cvk:1O (2.5) BS04 MG ? GO:0003735 ... Q5SHP8 36316410
    175966 8cvk:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 36316410
    175967 8cvk:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 36316410
    175968 8cvk:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 36316410
    175969 8cvk:1P (2.5) BS05 MG ? GO:0003735 ... Q5SHQ7 36316410
    175970 8cvk:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 36316410
    175971 8cvk:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 36316410
    175972 8cvk:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 36316410
    175973 8cvk:1Q (2.5) BS08 MG ? GO:0000049 ... P60489 36316410
    175974 8cvk:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 36316410
    175975 8cvk:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 36316410
    175976 8cvk:1S (2.5) BS03 MG ? GO:0003735 ... Q5SHQ4 36316410
    175977 8cvk:1S (2.5) BS04 MG ? GO:0003735 ... Q5SHQ4 36316410
    175978 8cvk:1U (2.5) BS02 MG ? GO:0000027 ... P60491 36316410
    175979 8cvk:1U (2.5) BS03 MG ? GO:0000027 ... P60491 36316410
    175980 8cvk:1U (2.5) BS04 MG ? GO:0000027 ... P60491 36316410
    175981 8cvk:1U (2.5) BS05 MG ? GO:0000027 ... P60491 36316410
    175982 8cvk:1U (2.5) BS06 MG ? GO:0000027 ... P60491 36316410
    175983 8cvk:1U (2.5) BS07 MG ? GO:0000027 ... P60491 36316410
    175984 8cvk:1U (2.5) BS08 MG ? GO:0000027 ... P60491 36316410
    175985 8cvk:1V (2.5) BS02 MG ? GO:0003723 ... P60492 36316410
    175986 8cvk:1V (2.5) BS03 MG ? GO:0003723 ... P60492 36316410
    175987 8cvk:1V (2.5) BS04 MG ? GO:0003723 ... P60492 36316410
    175988 8cvk:1V (2.5) BS05 MG ? GO:0003723 ... P60492 36316410
    175989 8cvk:1V (2.5) BS06 MG ? GO:0003723 ... P60492 36316410
    175990 8cvk:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 36316410
    175991 8cvk:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 36316410
    175992 8cvk:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 36316410
    175993 8cvk:1X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 36316410
    175994 8cvk:1X (2.5) BS03 MG ? GO:0000027 ... Q5SHP0 36316410
    175995 8cvk:1X (2.5) BS04 MG ? GO:0000027 ... Q5SHP0 36316410
    175996 8cvk:1X (2.5) BS05 MG ? GO:0000027 ... Q5SHP0 36316410
    175997 8cvk:1X (2.5) BS06 MG ? GO:0000027 ... Q5SHP0 36316410
    175998 8cvk:1Y (2.5) BS02 MG ? GO:0003723 ... Q5SHP9 36316410
    175999 8cvk:1Y (2.5) BS03 ZN ? GO:0003723 ... Q5SHP9 36316410
    176000 8cvk:1Z (2.5) BS03 MG ? GO:0003723 ... Q5SHZ1 36316410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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