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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175601 8cqw:k (3.05) BS03 MG N/A N/A Q59LS1 N/A
    175602 8cqw:k (3.05) BS04 MG N/A N/A Q59LS1 N/A
    175603 8cqw:r (3.05) BS03 MG N/A N/A Q5AIB8 N/A
    175604 8cqw:r (3.05) BS04 MG N/A N/A Q5AIB8 N/A
    175605 8cqw:v (3.05) BS03 MG N/A N/A Q5A6R1 N/A
    175606 8cqw:v (3.05) BS04 MG N/A N/A Q5A6R1 N/A
    175607 8cqw:w (3.05) BS02 MG N/A N/A A0A8H6BZ56 N/A
    175608 8cqw:x (3.05) BS03 MG N/A N/A A0A8H6BUG0 N/A
    175609 8cqw:x (3.05) BS04 MG N/A N/A A0A8H6BUG0 N/A
    175610 8cqw:z (3.05) BS03 MG N/A N/A A0A1D8PK40 N/A
    175611 8cqx:A (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    175612 8cqx:B (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    175613 8cqx:C (2.27) BS02 MG 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    175614 8cr0:X (1.22) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 37283561
    175615 8cr3:A (1.12) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    175616 8cr3:A (1.12) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    175617 8cr4:A (0.91) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    175618 8cr4:A (0.91) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    175619 8cr7:A (1.5) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    175620 8cr7:A (1.5) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    175621 8cr7:B (1.5) BS01 ZN 3.4.24.26 GO:0004175 ... P14756 37195753
    175622 8cr7:B (1.5) BS02 CA 3.4.24.26 GO:0004175 ... P14756 37195753
    175623 8crd:A (1.35) BS02 MN 4.1.1.102 GO:0005737 ... A2QHE5 N/A
    175624 8cre:AB (3.0) BS02 MG N/A N/A A0A8H6BVY8 N/A
    175625 8cre:AE (3.0) BS02 MG N/A N/A A0A8H6F1M1 N/A
    175626 8cre:AF (3.0) BS02 MG N/A N/A O94008 N/A
    175627 8cre:AG (3.0) BS02 MG N/A N/A A0A8H6BW57 N/A
    175628 8cre:AG (3.0) BS03 MG N/A N/A A0A8H6BW57 N/A
    175629 8cre:AH (3.0) BS02 MG N/A N/A A0A8H6F171 N/A
    175630 8cre:AH (3.0) BS03 ZN N/A N/A A0A8H6F171 N/A
    175631 8cre:AH (3.0) BS04 MG N/A N/A A0A8H6F171 N/A
    175632 8cre:AK (3.0) BS03 ZN N/A N/A A0A1D8PF45 N/A
    175633 8cre:AM (3.0) BS03 MG N/A N/A Q96W55 N/A
    175634 8cre:AN (3.0) BS02 ZN N/A N/A A0A1D8PL68 N/A
    175635 8cre:AP (3.0) BS03 ZN N/A N/A A0A8H6BR69 N/A
    175636 8cre:AP (3.0) BS04 MG N/A N/A A0A8H6BR69 N/A
    175637 8cre:AQ (3.0) BS02 ZN N/A N/A A0A1D8PP14 N/A
    175638 8cre:AW (3.0) BS02 MG N/A N/A A0A8H6F1X9 N/A
    175639 8cre:AW (3.0) BS03 MG N/A N/A A0A8H6F1X9 N/A
    175640 8cre:AW (3.0) BS04 MG N/A N/A A0A8H6F1X9 N/A
    175641 8cre:AZ (3.0) BS03 MG N/A N/A G1UAA6 N/A
    175642 8cre:BB (3.0) BS03 MG N/A N/A A0A8H6BVN2 N/A
    175643 8cre:BE (3.0) BS03 MG N/A N/A Q5AIB8 N/A
    175644 8cre:BJ (3.0) BS02 MG N/A N/A A0A8H6BZ56 N/A
    175645 8cre:BQ (3.0) BS02 MG N/A N/A A0A8H6C444 N/A
    175646 8cre:BZ (3.0) BS02 MG N/A N/A O94008 N/A
    175647 8cre:CE (3.0) BS03 ZN N/A N/A A0A1D8PF45 N/A
    175648 8cre:CH (3.0) BS02 ZN N/A N/A A0A1D8PL68 N/A
    175649 8cre:CJ (3.0) BS03 ZN N/A N/A A0A8H6BR69 N/A
    175650 8cre:CK (3.0) BS02 ZN N/A N/A A0A1D8PP14 N/A
    175651 8cre:DB (3.0) BS02 MG N/A N/A A0A8H6F0V4 N/A
    175652 8cre:DC (3.0) BS02 MG N/A N/A A0A1D8PK22 N/A
    175653 8cre:DG (3.0) BS02 MG N/A N/A A0A8H6C5L4 N/A
    175654 8cre:DN (3.0) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    175655 8cre:DQ (3.0) BS02 MG N/A N/A A0A1D8PTR4 N/A
    175656 8cre:DQ (3.0) BS03 ZN N/A N/A A0A1D8PTR4 N/A
    175657 8cre:DS (3.0) BS02 ZN N/A N/A Q5A109 N/A
    175658 8cre:G (3.0) BS02 MG N/A N/A A0A1D8PCI6 N/A
    175659 8cre:J (3.0) BS02 MG N/A N/A A0A8H6C655 N/A
    175660 8cre:K (3.0) BS03 MG N/A N/A A0A8H6F0S0 N/A
    175661 8cre:Q (3.0) BS02 MG N/A N/A A0A8H6F0V4 N/A
    175662 8cre:R (3.0) BS03 MG N/A N/A A0A1D8PK22 N/A
    175663 8cre:V (3.0) BS02 MG N/A N/A A0A8H6C5L4 N/A
    175664 8cre:Y (3.0) BS02 MG N/A N/A A0A8H6F0N4 N/A
    175665 8cre:c (3.0) BS02 ZN N/A N/A A0A8H6BTS1 N/A
    175666 8cre:f (3.0) BS02 ZN N/A N/A A0A1D8PTR4 N/A
    175667 8cre:h (3.0) BS02 ZN N/A N/A Q5A109 N/A
    175668 8cre:i (3.0) BS03 MG N/A N/A A0A1D8PK71 N/A
    175669 8cre:j (3.0) BS03 MG N/A N/A A0A8H6F1X9 N/A
    175670 8cre:k (3.0) BS02 MG N/A N/A Q59LS1 N/A
    175671 8cre:k (3.0) BS03 MG N/A N/A Q59LS1 N/A
    175672 8cre:k (3.0) BS04 MG N/A N/A Q59LS1 N/A
    175673 8cre:r (3.0) BS03 MG N/A N/A Q5AIB8 N/A
    175674 8cre:r (3.0) BS04 MG N/A N/A Q5AIB8 N/A
    175675 8cre:v (3.0) BS03 MG N/A N/A Q5A6R1 N/A
    175676 8cre:v (3.0) BS04 MG N/A N/A Q5A6R1 N/A
    175677 8cre:w (3.0) BS02 MG N/A N/A A0A8H6BZ56 N/A
    175678 8cre:x (3.0) BS03 MG N/A N/A A0A8H6BUG0 N/A
    175679 8cre:x (3.0) BS04 MG N/A N/A A0A8H6BUG0 N/A
    175680 8cre:z (3.0) BS03 MG N/A N/A A0A1D8PK40 N/A
    175681 8crl:A (2.6) BS02 CA 6.3.1.20 GO:0005524 ... A0A1D2IX29 37249408
    175682 8cro:A (3.1) BS03 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    175683 8cro:A (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    175684 8cro:A (3.1) BS05 MG 2.7.7.6 GO:0000287 ... Q8U0M4 38709902
    175685 8cro:B (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... Q8U0M3 38709902
    175686 8cro:N (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P60292 38709902
    175687 8cro:P (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... Q8TZI3 38709902
    175688 8crs:B (2.04) BS04 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    175689 8crs:B (2.04) BS05 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    175690 8crs:D (2.04) BS02 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    175691 8crs:D (2.04) BS03 FE 1.18.6.1 GO:0005524 ... P07329 36841829
    175692 8crx:0 (2.78) BS02 ZN ? GO:0003735 ... A0A2C6LJM0 36864821
    175693 8crx:1 (2.78) BS02 MG ? GO:0003735 ... A0A2B7IDI8 36864821
    175694 8crx:4 (2.78) BS03 ZN ? GO:0003735 ... A0A2B7JUW7 36864821
    175695 8crx:S (2.78) BS02 ZN ? GO:0003735 ... A0A2B7JMX1 36864821
    175696 8crx:c (2.78) BS02 MG ? GO:0002181 ... A0A2B7JMV5 36864821
    175697 8crx:k (2.78) BS02 MG ? GO:0003735 ... A0A2B7IUA0 36864821
    175698 8crx:w (2.78) BS02 ZN ? GO:0003735 ... A0A2B7I7B7 36864821
    175699 8crx:z (2.78) BS02 ZN ? GO:0003735 ... A0A2B7I771 36864821
    175700 8csp:B (2.66) BS03 MG ? GO:0003735 ... Q9Y399 36482135
    175701 8csp:O (2.66) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    175702 8csq:B (2.54) BS03 MG ? GO:0003735 ... Q9Y399 36482135
    175703 8csq:O (2.54) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    175704 8csr:B (2.54) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    175705 8csr:O (2.54) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    175706 8css:B (2.36) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    175707 8css:O (2.36) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    175708 8cst:B (2.85) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    175709 8cst:O (2.85) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    175710 8csu:B (3.03) BS02 MG ? GO:0003735 ... Q9Y399 36482135
    175711 8csu:O (3.03) BS02 ZN ? GO:0003735 ... Q9Y676 36482135
    175712 8csz:D (3.2) BS04 MG N/A N/A N/A 35617371
    175713 8csz:D (3.2) BS05 MG N/A N/A N/A 35617371
    175714 8ctc:A (2.8) BS02 NA ? GO:0001662 ... P43005 37142617
    175715 8ctc:A (2.8) BS03 NA ? GO:0001662 ... P43005 37142617
    175716 8ctc:A (2.8) BS04 NA ? GO:0001662 ... P43005 37142617
    175717 8ctc:B (2.8) BS02 NA ? GO:0001662 ... P43005 37142617
    175718 8ctc:B (2.8) BS03 NA ? GO:0001662 ... P43005 37142617
    175719 8ctc:B (2.8) BS04 NA ? GO:0001662 ... P43005 37142617
    175720 8ctc:C (2.8) BS02 NA ? GO:0001662 ... P43005 37142617
    175721 8ctc:C (2.8) BS03 NA ? GO:0001662 ... P43005 37142617
    175722 8ctc:C (2.8) BS04 NA ? GO:0001662 ... P43005 37142617
    175723 8ctd:A (3.42) BS02 NA ? GO:0001662 ... P43005 37142617
    175724 8ctd:A (3.42) BS03 NA ? GO:0001662 ... P43005 37142617
    175725 8ctd:A (3.42) BS04 NA ? GO:0001662 ... P43005 37142617
    175726 8ctf:A (2.14) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    175727 8ctf:A (2.14) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    175728 8ctm:A (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    175729 8ctm:B (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    175730 8ctm:C (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    175731 8ctm:C (1.73) BS02 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    175732 8ctm:D (1.73) BS01 CA 3.2.2.1 GO:0005829 ... Q8WQX2 N/A
    175733 8cu8:A (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175734 8cu8:C (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175735 8cu8:D (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175736 8cu8:E (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175737 8cu8:F (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175738 8cu8:G (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175739 8cu8:H (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175740 8cu8:I (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175741 8cu8:J (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175742 8cu8:K (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175743 8cu8:L (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175744 8cu8:M (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175745 8cu8:N (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175746 8cu8:O (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175747 8cu8:P (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175748 8cu8:Q (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175749 8cu8:R (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175750 8cu8:S (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175751 8cu8:T (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175752 8cu8:U (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175753 8cu8:V (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175754 8cu8:W (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175755 8cu8:X (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175756 8cu8:Y (1.91) BS01 FE 1.16.3.1 GO:0004322 ... Q9TYS3 N/A
    175757 8cua:A (2.44) BS01 K ? GO:0001662 ... P43005 37142617
    175758 8cua:B (2.44) BS01 K ? GO:0001662 ... P43005 37142617
    175759 8cua:C (2.44) BS01 K ? GO:0001662 ... P43005 37142617
    175760 8cuc:F (2.09) BS05 ZN ? N/A Q9UJQ4 N/A
    175761 8cuc:F (2.09) BS06 ZN ? N/A Q9UJQ4 N/A
    175762 8cuc:G (2.09) BS03 ZN ? N/A Q9UJQ4 N/A
    175763 8cuc:G (2.09) BS04 ZN ? N/A Q9UJQ4 N/A
    175764 8cv2:A (2.44) BS01 NA ? GO:0001662 ... P43005 37142617
    175765 8cv2:A (2.44) BS02 NA ? GO:0001662 ... P43005 37142617
    175766 8cv2:B (2.44) BS01 NA ? GO:0001662 ... P43005 37142617
    175767 8cv2:B (2.44) BS02 NA ? GO:0001662 ... P43005 37142617
    175768 8cv2:C (2.44) BS01 NA ? GO:0001662 ... P43005 37142617
    175769 8cv2:C (2.44) BS02 NA ? GO:0001662 ... P43005 37142617
    175770 8cv3:A (3.04) BS01 NA ? GO:0001662 ... P43005 37142617
    175771 8cv3:A (3.04) BS02 NA ? GO:0001662 ... P43005 37142617
    175772 8cv8:A (1.532) BS01 FE2 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175773 8cv9:A (1.79) BS02 V 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175774 8cva:A (1.581) BS01 FE2 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175775 8cvb:A (1.532) BS01 FE2 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175776 8cvc:A (1.791) BS02 V 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175777 8cvd:A (1.717) BS01 FE2 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175778 8cve:A (1.53) BS01 FE2 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175779 8cvf:A (1.532) BS02 V 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175780 8cvg:A (1.56) BS01 FE2 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175781 8cvh:A (2.03) BS02 V 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    175782 8cvj:10 (2.4) BS04 MG ? GO:0003735 ... P60493 36316410
    175783 8cvj:10 (2.4) BS05 MG ? GO:0003735 ... P60493 36316410
    175784 8cvj:10 (2.4) BS06 MG ? GO:0003735 ... P60493 36316410
    175785 8cvj:11 (2.4) BS03 MG ? GO:0003735 ... P60494 36316410
    175786 8cvj:11 (2.4) BS04 MG ? GO:0003735 ... P60494 36316410
    175787 8cvj:12 (2.4) BS02 MG ? GO:0003735 ... Q5SHP6 36316410
    175788 8cvj:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 36316410
    175789 8cvj:14 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 36316410
    175790 8cvj:15 (2.4) BS02 MG ? GO:0003735 ... P80339 36316410
    175791 8cvj:15 (2.4) BS03 MG ? GO:0003735 ... P80339 36316410
    175792 8cvj:15 (2.4) BS04 ZN ? GO:0003735 ... P80339 36316410
    175793 8cvj:16 (2.4) BS02 MG ? GO:0000049 ... P35871 36316410
    175794 8cvj:16 (2.4) BS03 MG ? GO:0000049 ... P35871 36316410
    175795 8cvj:16 (2.4) BS04 ZN ? GO:0000049 ... P35871 36316410
    175796 8cvj:17 (2.4) BS02 MG ? GO:0003735 ... P80340 36316410
    175797 8cvj:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 36316410
    175798 8cvj:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 36316410
    175799 8cvj:18 (2.4) BS04 MG ? GO:0003735 ... Q5SKU1 36316410
    175800 8cvj:19 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 36316410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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