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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175201 8ckb:E517 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175202 8ckb:E530 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175203 8ckb:H001 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175204 8ckb:H002 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175205 8ckb:H003 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175206 8ckb:H004 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175207 8ckb:H005 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175208 8ckb:H006 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175209 8ckb:H007 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175210 8ckb:H008 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175211 8ckb:H009 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175212 8ckb:H010 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175213 8ckb:H011 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175214 8ckb:H012 (4.39) BS01 MG ? GO:0019028 ... A0A385DT68 N/A
    175215 8ckr:A (1.3) BS01 CA N/A GO:0006396 ... N/A 38591647
    175216 8ckr:A (1.3) BS02 CA N/A GO:0006396 ... N/A 38591647
    175217 8cku:2 (3.11) BS02 ZN ? GO:0003735 ... N/A 38030725
    175218 8cku:5 (3.11) BS02 ZN ? GO:0003735 ... N/A 38030725
    175219 8cku:Aa (3.11) BS04 MG ? GO:0003924 ... N/A 38030725
    175220 8cku:EE (3.11) BS03 MG ? GO:0002181 ... P0CX45 38030725
    175221 8cku:S (3.11) BS02 ZN ? GO:0002181 ... P87262 38030725
    175222 8cku:V (3.11) BS03 ZN ? GO:0000448 ... P49166 38030725
    175223 8cku:Y (3.11) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    175224 8cku:a (3.11) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    175225 8cku:b (3.11) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    175226 8cl5:A (1.31) BS01 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    175227 8cl5:A (1.31) BS02 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    175228 8cl6:A (1.32) BS01 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    175229 8cl6:A (1.32) BS02 NA 3.2.1.17 GO:0003796 ... P00698 38042952
    175230 8cla:A (2.0) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    175231 8clb:A (3.0) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    175232 8clb:A (3.0) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175233 8clb:C (3.0) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    175234 8clb:C (3.0) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175235 8clc:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175236 8clc:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175237 8cld:A (3.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175238 8cld:C (3.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175239 8cle:A (3.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175240 8cle:C (3.2) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175241 8clf:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175242 8clf:C (2.7) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    175243 8clf:C (2.7) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175244 8clf:D (2.7) BS02 MG ? GO:0000226 ... Q6B856 38042952
    175245 8clg:A (2.8) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    175246 8clg:A (2.8) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175247 8clg:C (2.8) BS02 MG 3.6.5.- GO:0000226 ... P81947 38042952
    175248 8clg:C (2.8) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175249 8clh:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175250 8clh:C (2.5) BS03 CA 3.6.5.- GO:0000226 ... P81947 38042952
    175251 8cli:B (3.2) BS01 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175252 8cli:B (3.2) BS02 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175253 8clj:B (3.2) BS01 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175254 8clj:B (3.2) BS02 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175255 8clj:G (3.2) BS01 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175256 8clj:G (3.2) BS02 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175257 8cll:B (3.4) BS01 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175258 8cll:B (3.4) BS02 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175259 8cll:G (3.4) BS01 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175260 8cll:G (3.4) BS02 ZN 2.3.1.48 GO:0000127 ... Q9UKN8 37418517
    175261 8cly:AAA (2.503) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175262 8cly:BBB (2.503) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175263 8clz:AAA (1.501) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175264 8clz:BBB (1.501) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175265 8cmj:2 (3.79) BS02 ZN ? GO:0003735 ... N/A 38030725
    175266 8cmj:5 (3.79) BS02 ZN ? GO:0003735 ... N/A 38030725
    175267 8cmj:8 (3.79) BS02 ZN ? GO:0003735 ... N/A 38030725
    175268 8cmj:S (3.79) BS02 ZN ? GO:0002181 ... P87262 38030725
    175269 8cmj:V (3.79) BS03 ZN ? GO:0000448 ... P49166 38030725
    175270 8cmj:Y (3.79) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    175271 8cmj:a (3.79) BS02 ZN ? GO:0002181 ... P0CX27 38030725
    175272 8cmj:b (3.79) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    175273 8cmo:B (2.81) BS09 CA N/A GO:0009522 ... N/A N/A
    175274 8cmz:A (2.252) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175275 8cmz:A (2.252) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175276 8cmz:A (2.252) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175277 8cmz:A (2.252) BS04 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175278 8cn0:A (2.44) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175279 8cn0:A (2.44) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175280 8cn0:A (2.44) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175281 8cn0:A (2.44) BS04 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175282 8cn4:A (1.67) BS01 MG 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    175283 8cn9:A (3.4) BS01 CA N/A N/A N/A 39196196
    175284 8cn9:C (3.4) BS01 CA 3.4.21.21 GO:0004252 ... P08709 39196196
    175285 8cn9:H (3.4) BS01 CA 3.4.21.21 GO:0004252 ... P08709 39196196
    175286 8cn9:H (3.4) BS02 CA 3.4.21.21 GO:0004252 ... P08709 39196196
    175287 8cn9:K (3.4) BS01 CA N/A N/A N/A 39196196
    175288 8cn9:M (3.4) BS01 CA 3.4.21.21 GO:0004252 ... P08709 39196196
    175289 8cn9:M (3.4) BS02 CA 3.4.21.21 GO:0004252 ... P08709 39196196
    175290 8cn9:R (3.4) BS01 CA 3.4.21.21 GO:0004252 ... P08709 39196196
    175291 8cn9:R (3.4) BS02 CA 3.4.21.21 GO:0004252 ... P08709 39196196
    175292 8cna:A (2.463) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175293 8cna:A (2.463) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175294 8cna:A (2.463) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175295 8cna:A (2.463) BS04 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175296 8cnb:A (1.986) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175297 8cnb:A (1.986) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175298 8cnb:A (1.986) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175299 8cnb:A (1.986) BS04 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175300 8cnd:A (2.972) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175301 8cnd:A (2.972) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175302 8cnd:A (2.972) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175303 8cnd:A (2.972) BS04 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175304 8cnd:A (2.972) BS06 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 N/A
    175305 8cng:A (2.1) BS01 MG 2.3.1.179 GO:0004315 ... G3XDA2 N/A
    175306 8cnj:A (1.35) BS03 MG 3.6.5.2 GO:0003924 ... P01112 38297137
    175307 8cnj:B (1.35) BS03 MG 3.6.5.2 GO:0003924 ... P01112 38297137
    175308 8cnl:A (2.8) BS01 ZN N/A N/A P09992 N/A
    175309 8cnl:B (2.8) BS01 ZN N/A N/A P09992 N/A
    175310 8cnl:C (2.8) BS01 ZN N/A N/A P09992 N/A
    175311 8cnl:D (2.8) BS01 ZN N/A N/A P09992 N/A
    175312 8cnl:E (2.8) BS01 ZN N/A N/A P09992 N/A
    175313 8cnl:F (2.8) BS01 ZN N/A N/A P09992 N/A
    175314 8cnl:G (2.8) BS01 ZN N/A N/A P09992 N/A
    175315 8cnl:H (2.8) BS01 ZN N/A N/A P09992 N/A
    175316 8cnm:A (1.88) BS02 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    175317 8cnm:B (1.88) BS02 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    175318 8cnn:A (1.48) BS03 MG 3.6.5.2 GO:0003924 ... P01112 38297137
    175319 8cno:A (1.75) BS02 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    175320 8cno:B (1.75) BS02 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 N/A
    175321 8cnr:A (1.45) BS01 MG N/A GO:0003824 ... N/A 37250035
    175322 8cns:A (1.36) BS01 MG N/A GO:0003824 ... N/A 37250035
    175323 8co0:A (2.3) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37022308
    175324 8co0:C (2.3) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37022308
    175325 8co0:E (2.3) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37022308
    175326 8co0:G (2.3) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 37022308
    175327 8co3:A (1.68) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 37022308
    175328 8co3:B (1.68) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 37022308
    175329 8co3:C (1.68) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 37022308
    175330 8co3:D (1.68) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 37022308
    175331 8co4:A (1.9) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175332 8co4:A (1.9) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175333 8co4:B (1.9) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175334 8co4:B (1.9) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175335 8co4:C (1.9) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175336 8co4:C (1.9) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175337 8co4:D (1.9) BS01 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175338 8co4:D (1.9) BS02 ZN 1.1.1.-
    1.1.1.1
    1.1.1.284
    GO:0004022 ... Q96533 38308388
    175339 8co5:A (2.42) BS02 MG 2.7.13.3 GO:0006355 ... Q7CY45 N/A
    175340 8coh:A (1.3) BS01 MN N/A N/A N/A 38142486
    175341 8col:AAA (2.0) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175342 8col:BBB (2.0) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175343 8col:CCC (2.0) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175344 8col:DDD (2.0) BS01 ZN ? GO:0046872 ... Q2KB35 37494066
    175345 8con:A (1.7) BS01 ZN 1.1.1.1 GO:0000166 ... P06525 38308388
    175346 8con:A (1.7) BS02 ZN 1.1.1.1 GO:0000166 ... P06525 38308388
    175347 8cop:A (1.8) BS03 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    175348 8cop:A (1.8) BS04 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    175349 8cop:B (1.8) BS03 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    175350 8coq:A (1.7) BS03 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    175351 8cox:A (2.1) BS02 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    175352 8cox:B (2.1) BS01 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    175353 8cox:B (2.1) BS02 CO 1.5.1.3 GO:0004146 ... P9WNX1 N/A
    175354 8coy:A (1.507) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175355 8coy:A (1.507) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175356 8coy:A (1.507) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175357 8coy:B (1.507) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175358 8coy:B (1.507) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175359 8coy:B (1.507) BS04 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175360 8coz:A (1.438) BS01 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175361 8coz:A (1.438) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175362 8coz:A (1.438) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175363 8coz:B (1.438) BS01 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175364 8coz:B (1.438) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175365 8coz:B (1.438) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175366 8cp0:A (3.251) BS01 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175367 8cp0:A (3.251) BS02 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175368 8cp0:A (3.251) BS03 CA 3.4.21.62 GO:0004252 ... E6Y8B9 37428845
    175369 8cpa:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 1868092
    175370 8cps:1 (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175371 8cps:2 (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175372 8cps:4 (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175373 8cps:A (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175374 8cps:B (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175375 8cps:E (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175376 8cps:F (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175377 8cps:H (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175378 8cps:I (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175379 8cps:K (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175380 8cps:O (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175381 8cps:P (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175382 8cps:S (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175383 8cps:U (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175384 8cps:X (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175385 8cps:Y (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175386 8cps:e (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175387 8cps:r (1.82) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175388 8cpt:1 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175389 8cpt:2 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175390 8cpt:4 (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175391 8cpt:A (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175392 8cpt:B (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175393 8cpt:E (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175394 8cpt:F (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175395 8cpt:H (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175396 8cpt:I (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175397 8cpt:K (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175398 8cpt:O (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175399 8cpt:P (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761
    175400 8cpt:S (1.79) BS01 MG 1.16.3.1 GO:0004322 ... P02794 37918761

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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