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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175001 8cen:I (3.0) BS02 ZN ? GO:0000428 ... P27999 37014863
    175002 8cen:J (3.0) BS01 ZN ? GO:0000428 ... P22139 37014863
    175003 8cen:L (3.0) BS01 ZN ? GO:0000428 ... P40422 37014863
    175004 8cen:M (3.0) BS02 ZN ? GO:0000993 ... P29055 37014863
    175005 8cen:W (3.0) BS03 ZN ? GO:0000993 ... P36100 37014863
    175006 8ceo:3 (3.6) BS01 ZN ? GO:0000993 ... Q03290 37014863
    175007 8ceo:3 (3.6) BS02 ZN ? GO:0000993 ... Q03290 37014863
    175008 8ceo:4 (3.6) BS01 ZN ? GO:0000112 ... Q12004 37014863
    175009 8ceo:6 (3.6) BS01 ZN ? GO:0000112 ... Q04673 37014863
    175010 8ceo:6 (3.6) BS02 ZN ? GO:0000112 ... Q04673 37014863
    175011 8ceo:6 (3.6) BS03 ZN ? GO:0000112 ... Q04673 37014863
    175012 8ceo:6 (3.6) BS04 ZN ? GO:0000112 ... Q04673 37014863
    175013 8ceo:A (3.6) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 37014863
    175014 8ceo:A (3.6) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 37014863
    175015 8ceo:A (3.6) BS03 MG 2.7.7.6 GO:0000428 ... P04050 37014863
    175016 8ceo:B (3.6) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 37014863
    175017 8ceo:C (3.6) BS01 ZN ? GO:0000428 ... P16370 37014863
    175018 8ceo:I (3.6) BS01 ZN ? GO:0000428 ... P27999 37014863
    175019 8ceo:I (3.6) BS02 ZN ? GO:0000428 ... P27999 37014863
    175020 8ceo:J (3.6) BS01 ZN ? GO:0000428 ... P22139 37014863
    175021 8ceo:L (3.6) BS01 ZN ? GO:0000428 ... P40422 37014863
    175022 8ceo:M (3.6) BS03 ZN ? GO:0000993 ... P29055 37014863
    175023 8ceo:W (3.6) BS03 ZN ? GO:0000993 ... P36100 37014863
    175024 8ceu:3 (1.83) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    175025 8ceu:c (1.83) BS03 MG ? GO:0000027 ... P60422 37550453
    175026 8ceu:v (1.83) BS03 MG ? GO:0000027 ... P0A7L8 37550453
    175027 8cew:A (1.53) BS01 ZN 3.5.2.6 N/A Q6PJP8 38817593
    175028 8cf5:2 (2.71) BS02 ZN ? GO:0003735 ... N/A 38030725
    175029 8cf5:5 (2.71) BS02 ZN ? GO:0003735 ... N/A 38030725
    175030 8cf5:Aa (2.71) BS06 MG ? GO:0003924 ... N/A 38030725
    175031 8cf5:S (2.71) BS02 ZN ? GO:0002181 ... P87262 38030725
    175032 8cf5:V (2.71) BS03 ZN ? GO:0000448 ... P49166 38030725
    175033 8cf5:Y (2.71) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    175034 8cf5:a (2.71) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    175035 8cf5:b (2.71) BS03 ZN ? GO:0002181 ... P0CX25 38030725
    175036 8cg7:A (1.53) BS01 ZN ? GO:0000976 ... P04637 37657082
    175037 8cg7:B (1.53) BS01 ZN ? GO:0000976 ... P04637 37657082
    175038 8cg8:2 (2.57) BS02 ZN ? GO:0003735 ... N/A 38030725
    175039 8cg8:5 (2.57) BS02 ZN ? GO:0003735 ... N/A 38030725
    175040 8cg8:Aa (2.57) BS05 MG ? GO:0003924 ... N/A 38030725
    175041 8cg8:S (2.57) BS02 ZN ? GO:0002181 ... P87262 38030725
    175042 8cg8:V (2.57) BS03 ZN ? GO:0000448 ... P49166 38030725
    175043 8cg8:Y (2.57) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    175044 8cg8:a (2.57) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    175045 8cg8:b (2.57) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    175046 8cg9:A (1.68) BS03 ZN 3.5.2.6 N/A Q6PJP8 38817593
    175047 8cgd:3 (1.98) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    175048 8cge:A (2.5) BS01 CO N/A N/A N/A 37507458
    175049 8cge:A (2.5) BS02 CO N/A N/A N/A 37507458
    175050 8cge:B (2.5) BS01 CO N/A N/A N/A 37507458
    175051 8cge:B (2.5) BS02 CO N/A N/A N/A 37507458
    175052 8cgi:M (1.89) BS02 MG ? GO:0000049 ... P0A7S9 37550453
    175053 8cgk:3 (1.64) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    175054 8cgk:c (1.64) BS02 MG ? GO:0000027 ... P60422 37550453
    175055 8cgn:2 (2.28) BS02 ZN ? GO:0003735 ... N/A 38030725
    175056 8cgn:5 (2.28) BS02 ZN ? GO:0003735 ... N/A 38030725
    175057 8cgn:S (2.28) BS02 ZN ? GO:0002181 ... P87262 38030725
    175058 8cgn:V (2.28) BS03 ZN ? GO:0000448 ... P49166 38030725
    175059 8cgn:Y (2.28) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    175060 8cgn:a (2.28) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    175061 8cgn:b (2.28) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    175062 8cgp:A (2.62) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    175063 8cgp:B (2.62) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    175064 8cgt:A (2.4) BS05 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    175065 8cgt:A (2.4) BS06 CA 2.4.1.19 GO:0003824 ... P30920 9738912
    175066 8cgv:3 (1.66) BS02 ZN ? GO:0002181 ... P0A7Q6 37550453
    175067 8cgv:v (1.66) BS03 MG ? GO:0000027 ... P0A7L8 37550453
    175068 8cgw:A (3.03) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    175069 8cgw:B (3.03) BS01 ZN 3.4.11.3 GO:0006508 ... Q9UIQ6 38244767
    175070 8ch4:A (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    175071 8ch4:B (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    175072 8ch4:C (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    175073 8ch4:D (2.1) BS01 FE 1.13.11.64 GO:0051213 ... D3WZ86 37326584
    175074 8ch6:D (5.9) BS02 ZN ? GO:0000398 ... Q7RTV0 37165190
    175075 8ch6:D (5.9) BS03 ZN ? GO:0000398 ... Q7RTV0 37165190
    175076 8ch6:I (5.9) BS05 ZN ? GO:0000245 ... Q15428 37165190
    175077 8ch6:J (5.9) BS03 ZN ? GO:0000375 ... Q12874 37165190
    175078 8ch6:T (5.9) BS02 ZN ? GO:0000398 ... P41223 37165190
    175079 8ch6:T (5.9) BS03 ZN ? GO:0000398 ... P41223 37165190
    175080 8ch6:T (5.9) BS04 ZN ? GO:0000398 ... P41223 37165190
    175081 8ch6:U (5.9) BS03 ZN ? GO:0000398 ... Q9NW64 37165190
    175082 8ch6:U (5.9) BS04 ZN ? GO:0000398 ... Q9NW64 37165190
    175083 8ch6:U (5.9) BS05 ZN ? GO:0000398 ... Q9NW64 37165190
    175084 8ch6:Z (5.9) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 37165190
    175085 8chs:A (3.15) BS02 CA 2.8.2.8
    3.5.1.-    		 GO:0000139 ... P52848 38351061
    175086 8chx:A (1.8) BS01 ZN ? GO:0015031 ... P57069 37095149
    175087 8chx:A (1.8) BS02 ZN ? GO:0015031 ... P57069 37095149
    175088 8chx:B (1.8) BS01 ZN ? GO:0015031 ... P57069 37095149
    175089 8chy:A (2.0) BS01 ZN N/A GO:0006396 ... N/A 38591647
    175090 8chy:A (2.0) BS02 ZN N/A GO:0006396 ... N/A 38591647
    175091 8chy:A (2.0) BS03 ZN N/A GO:0006396 ... N/A 38591647
    175092 8chy:A (2.0) BS04 ZN N/A GO:0006396 ... N/A 38591647
    175093 8chy:A (2.0) BS05 ZN N/A GO:0006396 ... N/A 38591647
    175094 8chy:A (2.0) BS06 ZN N/A GO:0006396 ... N/A 38591647
    175095 8ci0:AAA (1.902) BS01 MG 2.2.1.1 GO:0003824 ... Q7SIC9 36807428
    175096 8ci0:BBB (1.902) BS02 MG 2.2.1.1 GO:0003824 ... Q7SIC9 36807428
    175097 8ci0:CCC (1.902) BS02 MG 2.2.1.1 GO:0003824 ... Q7SIC9 36807428
    175098 8ci9:C (1.41) BS01 FE 1.14.20.8 GO:0009611 ... A0A0N9HQ36 N/A
    175099 8cig:A (1.4) BS01 CA N/A GO:0006396 ... N/A 38591647
    175100 8cip:A (2.1) BS02 MG 2.2.1.1 GO:0003824 ... A0A0I9QGZ2 N/A
    175101 8cip:B (2.1) BS03 MG 2.2.1.1 GO:0003824 ... A0A0I9QGZ2 N/A
    175102 8cip:C (2.1) BS02 MG 2.2.1.1 GO:0003824 ... A0A0I9QGZ2 N/A
    175103 8cip:D (2.1) BS03 MG 2.2.1.1 GO:0003824 ... A0A0I9QGZ2 N/A
    175104 8civ:2 (2.47) BS02 ZN ? GO:0003735 ... N/A 38030725
    175105 8civ:5 (2.47) BS02 ZN ? GO:0003735 ... N/A 38030725
    175106 8civ:S (2.47) BS02 ZN ? GO:0002181 ... P87262 38030725
    175107 8civ:V (2.47) BS03 ZN ? GO:0000448 ... P49166 38030725
    175108 8civ:Y (2.47) BS02 ZN ? GO:0000027 ... P0CH08 38030725
    175109 8civ:a (2.47) BS03 ZN ? GO:0002181 ... P0CX27 38030725
    175110 8civ:b (2.47) BS02 ZN ? GO:0002181 ... P0CX25 38030725
    175111 8cix:A (1.76) BS02 CA ? GO:0003677 ... P0A988 38278788
    175112 8cix:A (1.76) BS03 CA ? GO:0003677 ... P0A988 38278788
    175113 8cix:A (1.76) BS04 MG ? GO:0003677 ... P0A988 38278788
    175114 8cix:A (1.76) BS05 MG ? GO:0003677 ... P0A988 38278788
    175115 8ciy:A (1.54) BS02 CA ? GO:0003677 ... P0A988 38278788
    175116 8ciy:A (1.54) BS03 MG ? GO:0003677 ... P0A988 38278788
    175117 8ciy:A (1.54) BS04 MG ? GO:0003677 ... P0A988 38278788
    175118 8ciy:A (1.54) BS05 MG ? GO:0003677 ... P0A988 38278788
    175119 8cj7:A (1.51) BS01 ZN ? N/A F8W4B7 37797307
    175120 8cj7:B (1.51) BS01 ZN ? N/A F8W4B7 37797307
    175121 8cjd:B (1.7) BS02 CA ? GO:0000166 ... A0A861B9Z9 37314407
    175122 8cji:A (1.65) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    175123 8cjj:A (1.66416) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    175124 8cjk:A (1.45915) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    175125 8cjl:A (1.83) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    175126 8cjm:A (1.9) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    175127 8cjn:A (1.68081) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    175128 8cjo:A (1.86634) BS01 FE 1.14.16.4 GO:0004497 ... P17752 37905925
    175129 8cjy:A (1.6) BS07 MG 1.12.7.2 GO:0005506 ... P29166 37830175
    175130 8cjy:B (1.6) BS07 MG 1.12.7.2 GO:0005506 ... P29166 37830175
    175131 8ck2:A (1.5) BS01 CA ? N/A Q02817 N/A
    175132 8ck2:A (1.5) BS02 CA ? N/A Q02817 N/A
    175133 8ckb:E009 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175134 8ckb:E021 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175135 8ckb:E030 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175136 8ckb:E044 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175137 8ckb:E053 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175138 8ckb:E062 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175139 8ckb:E071 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175140 8ckb:E080 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175141 8ckb:E088 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175142 8ckb:E097 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175143 8ckb:E106 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175144 8ckb:E120 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175145 8ckb:E129 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175146 8ckb:E138 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175147 8ckb:E142 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175148 8ckb:E151 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175149 8ckb:E160 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175150 8ckb:E173 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175151 8ckb:E182 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175152 8ckb:E191 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175153 8ckb:E195 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175154 8ckb:E204 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175155 8ckb:E213 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175156 8ckb:E221 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175157 8ckb:E230 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175158 8ckb:E236 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175159 8ckb:E245 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175160 8ckb:E254 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175161 8ckb:E269 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175162 8ckb:E281 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175163 8ckb:E292 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175164 8ckb:E301 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175165 8ckb:E310 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175166 8ckb:E314 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175167 8ckb:E323 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175168 8ckb:E332 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175169 8ckb:E345 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175170 8ckb:E354 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175171 8ckb:E363 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175172 8ckb:E369 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175173 8ckb:E378 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175174 8ckb:E386 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175175 8ckb:E395 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175176 8ckb:E404 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175177 8ckb:E418 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175178 8ckb:E427 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175179 8ckb:E436 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175180 8ckb:E440 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175181 8ckb:E449 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175182 8ckb:E458 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175183 8ckb:E471 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175184 8ckb:E480 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175185 8ckb:E489 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175186 8ckb:E491 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175187 8ckb:E492 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175188 8ckb:E493 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175189 8ckb:E494 (4.39) BS02 MG ? GO:0019028 ... A0A385DVU6 N/A
    175190 8ckb:E497 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175191 8ckb:E499 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175192 8ckb:E503 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175193 8ckb:E505 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175194 8ckb:E506 (4.39) BS02 MG ? GO:0019028 ... A0A385DVU6 N/A
    175195 8ckb:E507 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175196 8ckb:E508 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175197 8ckb:E509 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175198 8ckb:E512 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175199 8ckb:E513 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    175200 8ckb:E515 (4.39) BS01 MG ? GO:0019028 ... A0A385DVU6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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