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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174601 8c29:c (2.785) BS14 MG ? GO:0005737 ... R4ZGZ0 37550369
    174602 8c29:d (2.785) BS01 FE2 1.10.3.9 GO:0005506 ... R4ZGX6 37550369
    174603 8c2g:A (1.6) BS03 MG ? GO:0000122 ... P31947 37350830
    174604 8c2o:A (2.35) BS01 ZN 3.5.1.28 GO:0008270 ... P36548 37276423
    174605 8c2o:B (2.35) BS01 ZN 3.5.1.28 GO:0008270 ... P36548 37276423
    174606 8c2q:A (-1.00) BS01 AG ? N/A Q9ZHD1 37394004
    174607 8c2s:R (3.9) BS01 ZN ? GO:0001822 ... P52503 38177503
    174608 8c2z:A (1.91) BS02 MN 2.7.12.1 GO:0004672 ... Q9Y463 N/A
    174609 8c2z:A (1.91) BS03 MN 2.7.12.1 GO:0004672 ... Q9Y463 N/A
    174610 8c3a:AB (3.0) BS02 MG ? GO:0003735 ... A0A8H6BVY8 N/A
    174611 8c3a:AE (3.0) BS02 MG ? GO:0002181 ... A0A8H6F1M1 N/A
    174612 8c3a:AF (3.0) BS02 MG ? GO:0003735 ... O94008 N/A
    174613 8c3a:AF (3.0) BS03 MG ? GO:0003735 ... O94008 N/A
    174614 8c3a:AG (3.0) BS02 MG ? GO:0002181 ... A0A8H6BW57 N/A
    174615 8c3a:AH (3.0) BS02 MG ? GO:0003735 ... A0A8H6F171 N/A
    174616 8c3a:AH (3.0) BS03 ZN ? GO:0003735 ... A0A8H6F171 N/A
    174617 8c3a:AK (3.0) BS03 ZN ? GO:0003723 ... A0A1D8PF45 N/A
    174618 8c3a:AN (3.0) BS02 ZN ? GO:0003735 ... A0A1D8PL68 N/A
    174619 8c3a:AP (3.0) BS03 ZN ? GO:0003735 ... A0A8H6BR69 N/A
    174620 8c3a:AQ (3.0) BS02 ZN ? GO:0003735 ... A0A1D8PP14 N/A
    174621 8c3a:AW (3.0) BS02 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    174622 8c3a:AW (3.0) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    174623 8c3a:BE (3.0) BS03 MG ? GO:0000027 ... Q5AIB8 N/A
    174624 8c3a:BJ (3.0) BS02 MG ? GO:0003729 ... A0A8H6BZ56 N/A
    174625 8c3a:BK (3.0) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    174626 8c3a:BQ (3.0) BS02 MG ? GO:0003735 ... A0A8H6C444 N/A
    174627 8c3a:BS (3.0) BS03 MG ? GO:0000027 ... A0A8H6F6A1 N/A
    174628 8c3a:BZ (3.0) BS02 MG ? GO:0003735 ... O94008 N/A
    174629 8c3a:BZ (3.0) BS03 MG ? GO:0003735 ... O94008 N/A
    174630 8c3a:BZ (3.0) BS04 MG ? GO:0003735 ... O94008 N/A
    174631 8c3a:CA (3.0) BS02 MG ? GO:0002181 ... A0A8H6BW57 N/A
    174632 8c3a:CE (3.0) BS03 ZN ? GO:0003723 ... A0A1D8PF45 N/A
    174633 8c3a:CH (3.0) BS02 ZN ? GO:0003735 ... A0A1D8PL68 N/A
    174634 8c3a:CJ (3.0) BS03 ZN ? GO:0003735 ... A0A8H6BR69 N/A
    174635 8c3a:CK (3.0) BS02 ZN ? GO:0003735 ... A0A1D8PP14 N/A
    174636 8c3a:CY (3.0) BS02 MG ? GO:0003735 ... A0A1D8PN83 N/A
    174637 8c3a:DB (3.0) BS02 MG ? GO:0000028 ... A0A8H6F0V4 N/A
    174638 8c3a:DG (3.0) BS02 MG ? GO:0000028 ... A0A8H6C5L4 N/A
    174639 8c3a:DG (3.0) BS03 MG ? GO:0000028 ... A0A8H6C5L4 N/A
    174640 8c3a:DJ (3.0) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    174641 8c3a:DN (3.0) BS02 ZN ? GO:0003729 ... A0A8H6BTS1 N/A
    174642 8c3a:DQ (3.0) BS02 MG ? GO:0002181 ... A0A1D8PTR4 N/A
    174643 8c3a:DQ (3.0) BS03 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    174644 8c3a:DS (3.0) BS02 ZN ? GO:0003735 ... Q5A109 N/A
    174645 8c3a:G (3.0) BS02 MG ? GO:0003723 ... A0A1D8PCI6 N/A
    174646 8c3a:H (3.0) BS02 MG ? GO:0000028 ... A0A8H6BS29 N/A
    174647 8c3a:J (3.0) BS02 MG ? GO:0003735 ... A0A8H6C655 N/A
    174648 8c3a:Q (3.0) BS02 MG ? GO:0000028 ... A0A8H6F0V4 N/A
    174649 8c3a:R (3.0) BS03 MG ? GO:0000028 ... A0A1D8PK22 N/A
    174650 8c3a:Y (3.0) BS02 MG ? GO:0003735 ... A0A8H6F0N4 N/A
    174651 8c3a:c (3.0) BS02 ZN ? GO:0003729 ... A0A8H6BTS1 N/A
    174652 8c3a:f (3.0) BS02 ZN ? GO:0002181 ... A0A1D8PTR4 N/A
    174653 8c3a:i (3.0) BS03 MG ? GO:0000723 ... A0A1D8PK71 N/A
    174654 8c3a:i (3.0) BS04 MG ? GO:0000723 ... A0A1D8PK71 N/A
    174655 8c3a:j (3.0) BS03 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    174656 8c3a:j (3.0) BS04 MG ? GO:0002181 ... A0A8H6F1X9 N/A
    174657 8c3a:k (3.0) BS02 MG ? GO:0000027 ... Q59LS1 N/A
    174658 8c3a:k (3.0) BS03 MG ? GO:0000027 ... Q59LS1 N/A
    174659 8c3a:k (3.0) BS04 MG ? GO:0000027 ... Q59LS1 N/A
    174660 8c3a:k (3.0) BS05 MG ? GO:0000027 ... Q59LS1 N/A
    174661 8c3a:r (3.0) BS03 MG ? GO:0000027 ... Q5AIB8 N/A
    174662 8c3a:r (3.0) BS04 MG ? GO:0000027 ... Q5AIB8 N/A
    174663 8c3a:v (3.0) BS03 MG ? GO:0002181 ... Q5A6R1 N/A
    174664 8c3a:w (3.0) BS02 MG ? GO:0003729 ... A0A8H6BZ56 N/A
    174665 8c3a:x (3.0) BS03 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    174666 8c3a:x (3.0) BS04 MG ? GO:0002181 ... A0A8H6BUG0 N/A
    174667 8c3a:z (3.0) BS03 MG ? GO:0003723 ... A0A1D8PK40 N/A
    174668 8c3c:A (1.6) BS03 MG ? GO:0000122 ... P31947 37350830
    174669 8c3d:A (2.0) BS02 CA 3.4.22.38 GO:0006508 ... P43235 37853179
    174670 8c3f:L (2.6) BS07 FE ? GO:0009772 ... Q3J1A5 36837660
    174671 8c3f:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837660
    174672 8c3h:A (1.71) BS02 ZN ? GO:0046872 ... A4TVL0 36701892
    174673 8c3h:B (1.71) BS02 ZN ? GO:0046872 ... A4TVL0 36701892
    174674 8c3h:C (1.71) BS01 ZN ? GO:0046872 ... A4TVL0 36701892
    174675 8c3o:A (2.47) BS03 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174676 8c3o:A (2.47) BS04 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174677 8c3o:A (2.47) BS05 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    174678 8c3o:B (2.47) BS03 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174679 8c3o:B (2.47) BS04 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174680 8c3o:B (2.47) BS05 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    174681 8c3p:A (2.38) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    174682 8c3p:A (2.38) BS04 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    174683 8c3p:A (2.38) BS05 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174684 8c3p:A (2.38) BS06 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174685 8c3p:B (2.38) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    174686 8c3p:B (2.38) BS04 CA 3.1.4.39 GO:0003676 ... Q13822 37976710
    174687 8c3p:B (2.38) BS05 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174688 8c3p:B (2.38) BS06 ZN 3.1.4.39 GO:0003676 ... Q13822 37976710
    174689 8c3z:A (1.4) BS02 MG ? GO:0000122 ... P31947 37224961
    174690 8c41:A (2.393) BS03 MG 5.6.2.2 GO:0003677 ... P72525 N/A
    174691 8c41:B (2.393) BS03 MG 5.6.2.2 GO:0003677 ... P72525 N/A
    174692 8c46:A (2.0) BS01 ZN 3.5.1.6 GO:0016787 ... A0A8F7I7M8 37634202
    174693 8c46:A (2.0) BS02 ZN 3.5.1.6 GO:0016787 ... A0A8F7I7M8 37634202
    174694 8c46:B (2.0) BS01 ZN 3.5.1.6 GO:0016787 ... A0A8F7I7M8 37634202
    174695 8c46:B (2.0) BS02 ZN 3.5.1.6 GO:0016787 ... A0A8F7I7M8 37634202
    174696 8c49:A (1.82) BS02 MG 6.1.1.26 GO:0004812 ... M9SC49 37051694
    174697 8c49:A (1.82) BS03 MG 6.1.1.26 GO:0004812 ... M9SC49 37051694
    174698 8c49:A (1.82) BS04 MG 6.1.1.26 GO:0004812 ... M9SC49 37051694
    174699 8c49:B (1.82) BS02 MG 6.1.1.26 GO:0004812 ... M9SC49 37051694
    174700 8c49:B (1.82) BS03 MG 6.1.1.26 GO:0004812 ... M9SC49 37051694
    174701 8c4d:A (1.97) BS01 ZN ? GO:0008745 ... A0A7Y6US74 37156923
    174702 8c4v:A (3.14) BS06 MG 2.7.7.48
    3.1.-.-
    GO:0000166 ... P23456 37221161
    174703 8c4w:A (1.95) BS01 ZN 3.1.4.39 GO:0003676 ... Q64610 37976710
    174704 8c4w:A (1.95) BS02 ZN 3.1.4.39 GO:0003676 ... Q64610 37976710
    174705 8c4w:A (1.95) BS05 CA 3.1.4.39 GO:0003676 ... Q64610 37976710
    174706 8c4x:A (1.52) BS01 CA N/A N/A A0A0U5AS91 39020178
    174707 8c4y:AAA (1.6) BS01 FE ? GO:0006826 ... Q7V0T9 38489389
    174708 8c4z:B (1.47) BS01 CA N/A N/A P80146 39020178
    174709 8c4z:B (1.47) BS02 MG N/A N/A P80146 39020178
    174710 8c5c:N (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174711 8c5c:O (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174712 8c5c:Q (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174713 8c5c:R (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174714 8c5c:U (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174715 8c5c:V (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174716 8c5c:W (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174717 8c5c:X (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174718 8c5c:Y (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174719 8c5c:Z (5.3) BS01 MG 3.6.5.- GO:0000226 ... P81947 36541084
    174720 8c5d:A (1.28) BS02 CA 2.5.1.18 GO:0000302 ... P19157 37189361
    174721 8c5d:A (1.28) BS03 CA 2.5.1.18 GO:0000302 ... P19157 37189361
    174722 8c5d:B (1.28) BS02 CA 2.5.1.18 GO:0000302 ... P19157 37189361
    174723 8c5d:B (1.28) BS03 CA 2.5.1.18 GO:0000302 ... P19157 37189361
    174724 8c5h:S (1.68) BS01 CA ? GO:0016020 ... P21707 37421204
    174725 8c5m:B (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    174726 8c5m:B (1.9) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    174727 8c5x:L (2.6) BS07 FE ? GO:0009772 ... Q3J1A5 36837657
    174728 8c5x:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    174729 8c5y:A (3.35) BS01 ZN ? N/A G8ZHS0 37087464
    174730 8c5y:D (3.35) BS01 ZN ? N/A G8ZHS0 37087464
    174731 8c5y:G (3.35) BS01 ZN ? N/A G8ZHS0 37087464
    174732 8c5y:J (3.35) BS01 ZN ? N/A G8ZHS0 37087464
    174733 8c5z:A (3.8) BS01 ZN ? GO:0000724 ... G8ZHS0 37087464
    174734 8c5z:D (3.8) BS01 ZN ? GO:0000724 ... G8ZHS0 37087464
    174735 8c5z:G (3.8) BS01 ZN ? GO:0000724 ... G8ZHS0 37087464
    174736 8c5z:J (3.8) BS01 ZN ? GO:0000724 ... G8ZHS0 37087464
    174737 8c60:B (3.4) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q92769 37137925
    174738 8c60:B (3.4) BS02 CA 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q92769 37137925
    174739 8c60:B (3.4) BS03 CA 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q92769 37137925
    174740 8c60:C (3.4) BS01 ZN ? GO:0000122 ... Q96QT6 37137925
    174741 8c60:C (3.4) BS02 ZN ? GO:0000122 ... Q96QT6 37137925
    174742 8c60:C (3.4) BS03 ZN ? GO:0000122 ... Q96QT6 37137925
    174743 8c60:C (3.4) BS04 ZN ? GO:0000122 ... Q96QT6 37137925
    174744 8c61:A (2.5) BS01 ZN N/A N/A Q70EL1 N/A
    174745 8c61:A (2.5) BS02 ZN N/A N/A Q70EL1 N/A
    174746 8c61:A (2.5) BS03 ZN N/A N/A Q70EL1 N/A
    174747 8c61:D (2.5) BS01 ZN N/A N/A Q70EL1 N/A
    174748 8c61:D (2.5) BS02 ZN N/A N/A Q70EL1 N/A
    174749 8c61:D (2.5) BS03 ZN N/A N/A Q70EL1 N/A
    174750 8c61:G (2.5) BS01 ZN N/A N/A Q70EL1 N/A
    174751 8c61:G (2.5) BS02 ZN N/A N/A Q70EL1 N/A
    174752 8c61:G (2.5) BS03 ZN N/A N/A Q70EL1 N/A
    174753 8c61:J (2.5) BS01 ZN N/A N/A Q70EL1 N/A
    174754 8c61:J (2.5) BS02 ZN N/A N/A Q70EL1 N/A
    174755 8c61:J (2.5) BS03 ZN N/A N/A Q70EL1 N/A
    174756 8c6e:A (2.05) BS01 FE2 ? GO:0005549 ... Q8T6R7 37330089
    174757 8c6j:7 (2.8) BS02 MG 3.6.4.13 GO:0000184 ... P38919 36867703
    174758 8c6j:L (2.8) BS02 ZN ? GO:0000398 ... P41223 36867703
    174759 8c6j:L (2.8) BS03 ZN ? GO:0000398 ... P41223 36867703
    174760 8c6j:L (2.8) BS04 ZN ? GO:0000398 ... P41223 36867703
    174761 8c6j:M (2.8) BS03 ZN ? GO:0000398 ... Q9NW64 36867703
    174762 8c6j:M (2.8) BS04 ZN ? GO:0000398 ... Q9NW64 36867703
    174763 8c6j:M (2.8) BS05 ZN ? GO:0000398 ... Q9NW64 36867703
    174764 8c6k:L (2.86) BS07 FE ? GO:0009772 ... Q3J1A5 36837657
    174765 8c6k:M (2.86) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    174766 8c6v:D (2.15) BS01 ZN N/A N/A A0A076V8I4 N/A
    174767 8c6z:A (1.85) BS01 CO ? GO:0005975 ... F8UNI4 N/A
    174768 8c7c:L (2.6) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    174769 8c7c:M (2.6) BS06 FE ? GO:0009772 ... Q3J1A6 36837657
    174770 8c7r:A (2.53) BS03 ZN 3.1.4.39 GO:0003676 ... Q64610 37976710
    174771 8c7r:A (2.53) BS04 ZN 3.1.4.39 GO:0003676 ... Q64610 37976710
    174772 8c7r:A (2.53) BS05 CA 3.1.4.39 GO:0003676 ... Q64610 37976710
    174773 8c7r:A (2.53) BS06 CA 3.1.4.39 GO:0003676 ... Q64610 37976710
    174774 8c87:L (2.45) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    174775 8c87:M (2.45) BS07 FE ? GO:0009772 ... Q3J1A6 36837657
    174776 8c88:L (2.75) BS06 FE ? GO:0009772 ... Q3J1A5 36837657
    174777 8c88:M (2.75) BS07 FE ? GO:0009772 ... Q3J1A6 36837657
    174778 8c8b:A (1.46) BS02 ZN 3.5.2.6 N/A Q6PJP8 38817593
    174779 8c8b:A (1.46) BS03 ZN 3.5.2.6 N/A Q6PJP8 38817593
    174780 8c8d:A (1.46) BS02 ZN 3.5.2.6 N/A Q6PJP8 38817593
    174781 8c8d:A (1.46) BS03 ZN 3.5.2.6 N/A Q6PJP8 38817593
    174782 8c8h:A (3.84) BS01 MG 2.7.7.6 GO:0000428 ... P07392 N/A
    174783 8c8h:A (3.84) BS02 ZN 2.7.7.6 GO:0000428 ... P07392 N/A
    174784 8c8h:A (3.84) BS03 ZN 2.7.7.6 GO:0000428 ... P07392 N/A
    174785 8c8h:B (3.84) BS01 ZN 2.7.7.6 GO:0000428 ... Q76ZP7 N/A
    174786 8c8h:I (3.84) BS02 ZN ? GO:0003700 ... P68438 N/A
    174787 8c8j:A (2.1) BS04 MG 2.7.7.49
    3.1.21.-
    N/A O00370 38096902
    174788 8c8j:A (2.1) BS05 MG 2.7.7.49
    3.1.21.-
    N/A O00370 38096902
    174789 8c8q:A (3.36) BS03 CU 7.1.1.9 GO:0004129 ... P07657 36797353
    174790 8c8q:A (3.36) BS04 MG 7.1.1.9 GO:0004129 ... P07657 36797353
    174791 8c8q:A (3.36) BS05 CA 7.1.1.9 GO:0004129 ... P07657 36797353
    174792 8c8q:D (3.36) BS01 ZN ? GO:0004129 ... P79010 36797353
    174793 8c8s:A (1.8) BS02 ZN 3.5.2.6 N/A Q6PJP8 38817593
    174794 8c8s:A (1.8) BS03 ZN 3.5.2.6 N/A Q6PJP8 38817593
    174795 8c8u:A (1.901) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    174796 8c8u:A (1.901) BS03 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    174797 8c8v:A (2.2) BS01 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    174798 8c8v:A (2.2) BS02 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    174799 8c8w:A (2.29) BS02 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387
    174800 8c8w:A (2.29) BS03 ZN 6.1.1.5 GO:0000049 ... A0A0B6AVD3 37679387

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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