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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174201 8bpn:D (1.99) BS02 CU ? N/A W0DP94 N/A
    174202 8bpo:f2 (2.8) BS02 ZN ? GO:0003735 ... G1TXG5 37295431
    174203 8bpo:i2 (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 37295431
    174204 8bpo:l2 (2.8) BS02 ZN N/A GO:0003735 ... N/A 37295431
    174205 8bpo:n2 (2.8) BS02 ZN ? GO:0003735 ... G1T040 37295431
    174206 8bpo:o2 (2.8) BS02 ZN ? GO:0003735 ... G1SY53 37295431
    174207 8bpr:D (3.65) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    174208 8bpr:E (3.65) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    174209 8bpr:F (3.65) BS01 ZN ? GO:0003677 ... Q5SHY0 37081315
    174210 8bpx:AB (2.09) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    174211 8bpx:BB (2.09) BS01 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    174212 8bpx:O (2.09) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    174213 8bpx:R (2.09) BS01 ZN ? GO:0005739 ... Q9M9M6 36585502
    174214 8bpx:y (2.09) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    174215 8bpy:A (3.3) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 36475653
    174216 8bpy:B (3.3) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 36475653
    174217 8bq2:A (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174218 8bq2:A (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174219 8bq2:B (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174220 8bq2:B (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174221 8bq2:C (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174222 8bq2:C (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174223 8bq2:D (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174224 8bq2:D (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174225 8bq2:E (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174226 8bq2:E (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174227 8bq2:F (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174228 8bq2:F (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174229 8bq2:G (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174230 8bq2:G (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174231 8bq2:H (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174232 8bq2:H (3.8) BS04 CA ? GO:0000150 ... Q06609 37216117
    174233 8bq2:I (3.8) BS03 CA ? GO:0000150 ... Q06609 37216117
    174234 8bq5:AB (2.73) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    174235 8bq5:BB (2.73) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    174236 8bq5:O (2.73) BS01 FE ? GO:0051536 ... A0A384LA38 36585502
    174237 8bq5:R (2.73) BS01 ZN ? GO:0005739 ... Q9M9M6 36585502
    174238 8bq5:y (2.73) BS03 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    174239 8bq6:AB (2.8) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    174240 8bq6:BB (2.8) BS01 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    174241 8bq6:O (2.8) BS01 FE ? GO:0051536 ... A0A384LA38 36585502
    174242 8bq6:R (2.8) BS01 ZN ? GO:0005739 ... Q9M9M6 36585502
    174243 8bq6:y (2.8) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    174244 8bqd:AF (3.9) BS03 ZN ? GO:0000448 ... P49166 37079644
    174245 8bqd:AO (3.9) BS02 ZN ? GO:0003735 ... P0CH08 37079644
    174246 8bqd:AP (3.9) BS02 ZN ? GO:0002181 ... P0CX27 37079644
    174247 8bqd:AT (3.9) BS02 ZN ? GO:0002181 ... P0CX25 37079644
    174248 8bqd:BN (3.9) BS02 ZN ? GO:0002181 ... P87262 37079644
    174249 8bqd:M (3.9) BS02 ZN ? GO:0002181 ... P41057 37079644
    174250 8bqd:N (3.9) BS02 ZN ? GO:0003735 ... P05759 37079644
    174251 8bqe:A (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174252 8bqe:A (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174253 8bqe:A (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174254 8bqe:B (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174255 8bqe:B (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174256 8bqe:B (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174257 8bqe:C (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174258 8bqe:C (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174259 8bqe:C (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174260 8bqe:D (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174261 8bqe:D (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174262 8bqe:D (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174263 8bqe:E (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174264 8bqe:E (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174265 8bqe:E (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174266 8bqe:F (3.5) BS07 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174267 8bqe:F (3.5) BS08 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174268 8bqe:F (3.5) BS09 CA ? GO:0005509 ... A0A0H3C8J1 36468689
    174269 8bqs:BR (2.9) BS01 ZN ? GO:0005739 ... I7MK02 N/A
    174270 8bqs:CA (2.9) BS01 CA 1.3.5.1 GO:0005743 ... Q23DI3 N/A
    174271 8bqs:CB (2.9) BS04 CA 1.3.5.1 GO:0005743 ... I7M403 N/A
    174272 8bqs:DA (2.9) BS01 CA 7.1.1.9 GO:0004129 ... Q950Y4 N/A
    174273 8bqs:DA (2.9) BS04 CU 7.1.1.9 GO:0004129 ... Q950Y4 N/A
    174274 8bqs:DA (2.9) BS05 MG 7.1.1.9 GO:0004129 ... Q950Y4 N/A
    174275 8bqs:DD (2.9) BS01 ZN ? GO:0005740 ... Q23FF5 N/A
    174276 8bqs:Da (2.9) BS01 CA 7.1.1.9 GO:0004129 ... Q950Y4 N/A
    174277 8bqs:Da (2.9) BS04 CU 7.1.1.9 GO:0004129 ... Q950Y4 N/A
    174278 8bqs:Da (2.9) BS05 MG 7.1.1.9 GO:0004129 ... Q950Y4 N/A
    174279 8bqs:Dd (2.9) BS01 ZN ? GO:0005740 ... Q23FF5 N/A
    174280 8bqx:AF (3.8) BS03 ZN ? GO:0000448 ... P49166 37079644
    174281 8bqx:AO (3.8) BS02 ZN ? GO:0003735 ... P0CH08 37079644
    174282 8bqx:AP (3.8) BS02 ZN ? GO:0002181 ... P0CX27 37079644
    174283 8bqx:AT (3.8) BS02 ZN ? GO:0002181 ... P0CX25 37079644
    174284 8bqx:BN (3.8) BS02 ZN ? GO:0002181 ... P87262 37079644
    174285 8bqx:M (3.8) BS02 ZN ? GO:0002181 ... P41057 37079644
    174286 8bqx:N (3.8) BS02 ZN ? GO:0003735 ... P05759 37079644
    174287 8br0:B (2.218) BS01 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    174288 8br0:B (2.218) BS02 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    174289 8br0:D (2.218) BS01 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    174290 8br0:D (2.218) BS02 MN 4.6.1.1 GO:0000774 ... A0A9P1NJI6
    P07737
    37747912
    174291 8br1:B (2.044) BS02 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    174292 8br1:B (2.044) BS03 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    174293 8br1:D (2.044) BS02 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    174294 8br1:D (2.044) BS03 MG 4.6.1.1 GO:0005576 ... A0A9P1NJI6 37747912
    174295 8br2:A (2.9) BS02 CA ? GO:0000150 ... Q06609 37216117
    174296 8br2:A (2.9) BS04 CA ? GO:0000150 ... Q06609 37216117
    174297 8br2:B (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    174298 8br2:B (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    174299 8br2:C (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    174300 8br2:C (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    174301 8br2:D (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    174302 8br2:D (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    174303 8br2:E (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    174304 8br2:E (2.9) BS05 CA ? GO:0000150 ... Q06609 37216117
    174305 8br2:F (2.9) BS03 CA ? GO:0000150 ... Q06609 37216117
    174306 8brc:A (3.17) BS01 FE ? GO:0005515 ... P02787 36602395
    174307 8brd:B (2.48) BS01 NA ? GO:0005515 ... O06873 37500658
    174308 8brd:E (2.48) BS01 NA ? GO:0005515 ... O06873 37500658
    174309 8brd:G (2.48) BS01 NA ? N/A A0A7Y4B4T7 37500658
    174310 8brn:A (2.0) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 37087894
    174311 8brn:A (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    174312 8brn:B (2.0) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 37087894
    174313 8brn:B (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    174314 8brn:C (2.0) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 37087894
    174315 8brn:C (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    174316 8brn:D (2.0) BS01 ZN 3.1.3.2 GO:0003993 ... P80366 37087894
    174317 8brn:D (2.0) BS02 FE 3.1.3.2 GO:0003993 ... P80366 37087894
    174318 8brp:A (2.6) BS01 MN ? GO:0046872 ... D8G6F7 36791048
    174319 8brp:A (2.6) BS02 MN ? GO:0046872 ... D8G6F7 36791048
    174320 8brp:B (2.6) BS01 MN ? GO:0046872 ... D8G6F7 36791048
    174321 8brp:B (2.6) BS02 MN ? GO:0046872 ... D8G6F7 36791048
    174322 8brp:C (2.6) BS01 MN ? GO:0046872 ... D8G6F7 36791048
    174323 8brp:C (2.6) BS02 MN ? GO:0046872 ... D8G6F7 36791048
    174324 8brp:D (2.6) BS01 MN ? GO:0046872 ... D8G6F7 36791048
    174325 8brp:D (2.6) BS02 MN ? GO:0046872 ... D8G6F7 36791048
    174326 8brq:B (1.63) BS03 CA ? GO:0016787 ... A0A0K9H482 N/A
    174327 8brq:B (1.63) BS04 CA ? GO:0016787 ... A0A0K9H482 N/A
    174328 8brr:B (1.95) BS02 CA ? GO:0016787 ... A0A0K9H482 N/A
    174329 8brr:B (1.95) BS03 CA ? GO:0016787 ... A0A0K9H482 N/A
    174330 8brr:D (1.95) BS02 CA ? GO:0016787 ... A0A0K9H482 N/A
    174331 8brr:D (1.95) BS03 CA ? GO:0016787 ... A0A0K9H482 N/A
    174332 8brs:B (1.2) BS04 CA ? GO:0016787 ... A0A0K9H482 N/A
    174333 8brs:B (1.2) BS05 CA ? GO:0016787 ... A0A0K9H482 N/A
    174334 8brt:B (1.31) BS03 CA ? GO:0016787 ... A0A0K9H482 N/A
    174335 8brt:B (1.31) BS04 CA ? GO:0016787 ... A0A0K9H482 N/A
    174336 8bru:A (1.55) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 37518893
    174337 8brv:A (1.53) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 37518893
    174338 8brw:A (1.73) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 37518893
    174339 8brx:A (1.54) BS01 ZN 6.1.1.10 GO:0000166 ... P00959 37518893
    174340 8bs3:A (2.2) BS01 ZN 2.3.2.-
    3.4.19.12
    GO:0004843 ... Q9P275 37443395
    174341 8bs3:A (2.2) BS02 ZN 2.3.2.-
    3.4.19.12
    GO:0004843 ... Q9P275 37443395
    174342 8bs9:A (1.9) BS01 ZN 2.3.2.-
    3.4.19.12
    GO:0004843 ... Q9P275 37443395
    174343 8bs9:A (1.9) BS02 ZN 2.3.2.-
    3.4.19.12
    GO:0004843 ... Q9P275 37443395
    174344 8bs9:C (1.9) BS01 ZN 2.3.2.-
    3.4.19.12
    GO:0004843 ... Q9P275 37443395
    174345 8bs9:C (1.9) BS02 ZN 2.3.2.-
    3.4.19.12
    GO:0004843 ... Q9P275 37443395
    174346 8bsc:A (3.6) BS01 CA ? GO:0000150 ... Q06609 37216117
    174347 8bsc:B (3.6) BS01 CA ? GO:0000150 ... Q06609 37216117
    174348 8bsc:C (3.6) BS01 CA ? GO:0000150 ... Q06609 37216117
    174349 8bsc:D (3.6) BS01 CA ? GO:0000150 ... Q06609 37216117
    174350 8bsc:E (3.6) BS01 CA ? GO:0000150 ... Q06609 37216117
    174351 8bsc:F (3.6) BS01 CA ? GO:0000150 ... Q06609 37216117
    174352 8bsc:G (3.6) BS01 CA ? GO:0000150 ... Q06609 37216117
    174353 8bsd:B (1.95) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    174354 8bsd:B (1.95) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    174355 8bsh:B (3.8) BS01 MG 3.6.5.- GO:0000139 ... P20606 36468689
    174356 8bst:A (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    174357 8bst:B (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    174358 8bst:B (2.7) BS02 ZN ? GO:0015276 ... P42264 38145505
    174359 8bst:C (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    174360 8bst:D (2.7) BS01 ZN ? GO:0015276 ... P42264 38145505
    174361 8bsu:A (2.9) BS02 ZN ? GO:0015276 ... P42264 38145505
    174362 8bsu:B (2.9) BS02 ZN ? GO:0015276 ... P42264 38145505
    174363 8bsu:C (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    174364 8bsu:D (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    174365 8bsu:E (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    174366 8bsu:E (2.9) BS04 ZN ? GO:0015276 ... P42264 38145505
    174367 8bsu:F (2.9) BS02 ZN ? GO:0015276 ... P42264 38145505
    174368 8bsu:F (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    174369 8bsu:G (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    174370 8bsu:G (2.9) BS04 ZN ? GO:0015276 ... P42264 38145505
    174371 8bsu:H (2.9) BS03 ZN ? GO:0015276 ... P42264 38145505
    174372 8bsu:H (2.9) BS04 ZN ? GO:0015276 ... P42264 38145505
    174373 8bsv:A (1.53) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    174374 8bsw:A (1.58) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    174375 8bsx:A (1.38) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    174376 8bsy:A (1.4) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    174377 8bt4:A (1.35) BS01 CA 1.17.4.1 GO:0004748 ... Q6F0T5 37797025
    174378 8bt4:B (1.35) BS01 CA 1.17.4.1 GO:0004748 ... Q6F0T5 37797025
    174379 8btg:B (3.2) BS03 MG ? GO:0003677 ... P05648 38097584
    174380 8btg:D (3.2) BS02 MG ? GO:0003677 ... P05648 38097584
    174381 8btk:AC (3.5) BS02 ZN ? GO:0003723 ... G1SK22 37170030
    174382 8btk:AE (3.5) BS02 ZN ? GO:0002181 ... A0A2K5LQY6 37170030
    174383 8btk:AG (3.5) BS02 ZN ? GO:0003735 ... G1U7M4 37170030
    174384 8btk:Ae (3.5) BS02 MG ? GO:0000028 ... G1TFM5 37170030
    174385 8btk:Ak (3.5) BS02 MG ? GO:0003735 ... G1TRM4 37170030
    174386 8btk:An (3.5) BS02 MG ? GO:0000028 ... G1T1F0 37170030
    174387 8btk:BA (3.5) BS03 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2
    37170030
    174388 8btk:BA (3.5) BS04 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2
    37170030
    174389 8btk:BA (3.5) BS05 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2
    37170030
    174390 8btk:BA (3.5) BS06 MG ? GO:0003723 ... A0A5F9C4D3
    A0A5F9D5B2
    37170030
    174391 8btk:BB (3.5) BS02 MG ? GO:0003723 ... G1TL06 37170030
    174392 8btk:BB (3.5) BS03 MG ? GO:0003723 ... G1TL06 37170030
    174393 8btk:BB (3.5) BS04 MG ? GO:0003723 ... G1TL06 37170030
    174394 8btk:BC (3.5) BS03 MG ? GO:0003723 ... G1SVW5 37170030
    174395 8btk:BH (3.5) BS02 MG ? GO:0002181 ... G1SWI6 37170030
    174396 8btk:BI (3.5) BS04 MG ? GO:0000027 ... B7NZQ2 37170030
    174397 8btk:BL (3.5) BS03 MG ? GO:0003723 ... G1TKB3 37170030
    174398 8btk:BN (3.5) BS03 MG ? GO:0002181 ... G1T0C1 37170030
    174399 8btk:BN (3.5) BS04 MG ? GO:0002181 ... G1T0C1 37170030
    174400 8btk:BQ (3.5) BS02 MG ? GO:0002181 ... F6QKI9 37170030

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218