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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    173801 8b8q:B (2.94) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    173802 8b9a:2 (3.5) BS02 MG 3.6.4.12 GO:0000727 ... P29469 37506699
    173803 8b9a:4 (3.5) BS04 ZN 3.6.4.12 GO:0000727 ... P30665 37506699
    173804 8b9a:5 (3.5) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 37506699
    173805 8b9a:6 (3.5) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 37506699
    173806 8b9a:7 (3.5) BS05 ZN 3.6.4.12 GO:0000727 ... P38132 37506699
    173807 8b9b:2 (3.5) BS02 MG 3.6.4.12 GO:0000727 ... P29469 37506699
    173808 8b9b:4 (3.5) BS04 ZN 3.6.4.12 GO:0000727 ... P30665 37506699
    173809 8b9b:5 (3.5) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 37506699
    173810 8b9b:6 (3.5) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 37506699
    173811 8b9b:7 (3.5) BS05 ZN 3.6.4.12 GO:0000727 ... P38132 37506699
    173812 8b9c:2 (4.6) BS02 MG 3.6.4.12 GO:0000727 ... P29469 37506699
    173813 8b9c:4 (4.6) BS04 ZN 3.6.4.12 GO:0000727 ... P30665 37506699
    173814 8b9c:5 (4.6) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 37506699
    173815 8b9c:6 (4.6) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 37506699
    173816 8b9c:7 (4.6) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 37506699
    173817 8b9d:4 (3.4) BS01 ZN 3.6.4.12 GO:0000727 ... P33991 37506699
    173818 8b9d:6 (3.4) BS04 ZN 3.6.4.12 GO:0000727 ... Q14566 37506699
    173819 8b9d:7 (3.4) BS02 ZN 3.6.4.12 GO:0000727 ... P33993 37506699
    173820 8b9n:A (2.0) BS02 ZN 3.2.2.-
    4.2.99.18    		 GO:0003676 ... Q8K203 N/A
    173821 8b9n:C (2.0) BS02 ZN 3.2.2.-
    4.2.99.18    		 GO:0003676 ... Q8K203 N/A
    173822 8b9v:L (2.16) BS02 ZN N/A N/A N/A N/A
    173823 8b9v:L (2.16) BS03 ZN N/A N/A N/A N/A
    173824 8b9v:L (2.16) BS04 ZN N/A N/A N/A N/A
    173825 8b9z:R (3.28) BS01 ZN ? GO:0006120 ... Q9VMU0 36622099
    173826 8ba0:R (3.68) BS01 ZN ? GO:0006120 ... Q9VMU0 36622099
    173827 8ba5:A (1.45) BS01 ZN 2.1.1.-
    2.1.1.37    		 N/A Q9Y6K1 36519786
    173828 8ba5:A (1.45) BS02 ZN 2.1.1.-
    2.1.1.37    		 N/A Q9Y6K1 36519786
    173829 8ba5:A (1.45) BS03 ZN 2.1.1.-
    2.1.1.37    		 N/A Q9Y6K1 36519786
    173830 8bad:A (1.81) BS01 CA ? GO:0035821 ... A0A4V1G8Q1 36548760
    173831 8bad:B (1.81) BS01 CA ? GO:0035821 ... A0A4V1G8Q1 36548760
    173832 8bah:A (4.13) BS01 MN 3.1.-.- GO:0000014 ... P49959 36577401
    173833 8bah:A (4.13) BS02 MN 3.1.-.- GO:0000014 ... P49959 36577401
    173834 8bah:B (4.13) BS01 MN 3.1.-.- GO:0000014 ... P49959 36577401
    173835 8bah:B (4.13) BS02 MN 3.1.-.- GO:0000014 ... P49959 36577401
    173836 8bal:A (2.27) BS01 ZN 3.2.1.52 GO:0004553 ... G8TKW6 N/A
    173837 8bal:C (2.27) BS01 ZN 3.2.1.52 GO:0004553 ... G8TKW6 N/A
    173838 8bal:D (2.27) BS01 ZN 3.2.1.52 GO:0004553 ... G8TKW6 N/A
    173839 8bal:E (2.27) BS01 ZN 3.2.1.52 GO:0004553 ... G8TKW6 N/A
    173840 8bal:F (2.27) BS01 ZN 3.2.1.52 GO:0004553 ... G8TKW6 N/A
    173841 8ban:C (2.35) BS01 CA ? GO:0005509 ... Q91WD9 38593081
    173842 8ban:C (2.35) BS02 CA ? GO:0005509 ... Q91WD9 38593081
    173843 8ban:C (2.35) BS03 CA ? GO:0005509 ... Q91WD9 38593081
    173844 8ban:C (2.35) BS04 CA ? GO:0005509 ... Q91WD9 38593081
    173845 8ban:D (2.35) BS01 CA ? GO:0005509 ... Q91WD9 38593081
    173846 8ban:D (2.35) BS02 CA ? GO:0005509 ... Q91WD9 38593081
    173847 8ban:D (2.35) BS03 CA ? GO:0005509 ... Q91WD9 38593081
    173848 8ban:D (2.35) BS04 CA ? GO:0005509 ... Q91WD9 38593081
    173849 8bap:A (2.3) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    173850 8bap:B (2.3) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    173851 8bap:F (2.3) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    173852 8bap:J (2.3) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    173853 8bap:M (2.3) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    173854 8bap:N (2.3) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    173855 8bap:O (2.3) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 38026814
    173856 8bav:C (2.3) BS01 CA ? GO:0005509 ... O76038 38593081
    173857 8bav:C (2.3) BS02 CA ? GO:0005509 ... O76038 38593081
    173858 8bav:C (2.3) BS03 CA ? GO:0005509 ... O76038 38593081
    173859 8bav:C (2.3) BS04 CA ? GO:0005509 ... O76038 38593081
    173860 8bav:D (2.3) BS01 CA ? GO:0005509 ... O76038 38593081
    173861 8bav:D (2.3) BS02 CA ? GO:0005509 ... O76038 38593081
    173862 8bav:D (2.3) BS03 CA ? GO:0005509 ... O76038 38593081
    173863 8bav:D (2.3) BS04 CA ? GO:0005509 ... O76038 38593081
    173864 8baw:A (1.471) BS01 FE N/A GO:0006826 ... N/A 37428843
    173865 8baw:B (1.471) BS01 FE N/A GO:0006826 ... N/A 37428843
    173866 8bax:A (1.38) BS01 FE N/A GO:0006826 ... N/A 37428843
    173867 8bay:A (2.35) BS04 CA 1.1.1.42 GO:0000287 ... O75874 36621625
    173868 8bay:B (2.35) BS01 CA 1.1.1.42 GO:0000287 ... O75874 36621625
    173869 8bay:C (2.35) BS04 CA 1.1.1.42 GO:0000287 ... O75874 36621625
    173870 8bb9:A (1.68) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    173871 8bba:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    173872 8bbc:A (1.71) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    173873 8bbj:C (2.65) BS01 CA ? GO:0005509 ... Q91WD9 38593081
    173874 8bbj:C (2.65) BS02 CA ? GO:0005509 ... Q91WD9 38593081
    173875 8bbj:C (2.65) BS03 CA ? GO:0005509 ... Q91WD9 38593081
    173876 8bbj:C (2.65) BS04 CA ? GO:0005509 ... Q91WD9 38593081
    173877 8bbj:D (2.65) BS01 CA ? GO:0005509 ... Q91WD9 38593081
    173878 8bbj:D (2.65) BS02 CA ? GO:0005509 ... Q91WD9 38593081
    173879 8bbj:D (2.65) BS03 CA ? GO:0005509 ... Q91WD9 38593081
    173880 8bbj:D (2.65) BS04 CA ? GO:0005509 ... Q91WD9 38593081
    173881 8bbk:A (3.27) BS02 ZN 2.3.1.286 GO:0003950 ... Q9NTG7 36361557
    173882 8bbk:B (3.27) BS02 ZN 2.3.1.286 GO:0003950 ... Q9NTG7 36361557
    173883 8bbk:C (3.27) BS02 ZN 2.3.1.286 GO:0003950 ... Q9NTG7 36361557
    173884 8bbk:D (3.27) BS02 ZN 2.3.1.286 GO:0003950 ... Q9NTG7 36361557
    173885 8bbk:E (3.27) BS02 ZN 2.3.1.286 GO:0003950 ... Q9NTG7 36361557
    173886 8bbk:F (3.27) BS02 ZN 2.3.1.286 GO:0003950 ... Q9NTG7 36361557
    173887 8bbq:A (1.43) BS01 CU N/A GO:0016491 ... N/A 37759761
    173888 8bbq:A (1.43) BS02 CU N/A GO:0016491 ... N/A 37759761
    173889 8bbq:B (1.43) BS01 CU N/A GO:0016491 ... N/A 37759761
    173890 8bbq:B (1.43) BS02 CU N/A GO:0016491 ... N/A 37759761
    173891 8bbr:A (1.64) BS01 CU N/A GO:0016491 ... N/A 37759761
    173892 8bbr:A (1.64) BS02 CU N/A GO:0016491 ... N/A 37759761
    173893 8bbr:B (1.64) BS01 CU N/A GO:0016491 ... N/A 37759761
    173894 8bbr:B (1.64) BS02 CU N/A GO:0016491 ... N/A 37759761
    173895 8bbt:A (1.69) BS01 CA ? GO:0046872 ... A0A0B4VFQ3 37443157
    173896 8bbu:A (1.1) BS01 NA 3.2.1.17 GO:0003796 ... Q25091 37095116
    173897 8bbu:B (1.1) BS01 NA 3.2.1.17 GO:0003796 ... Q25091 37095116
    173898 8bbz:CCC (2.2) BS01 ZN ? GO:0046872 ... A0A482M8M0 N/A
    173899 8bc0:A (3.09) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    173900 8bc0:A (3.09) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    173901 8bc0:A (3.09) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    173902 8bc0:B (3.09) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    173903 8bc0:B (3.09) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    173904 8bc0:B (3.09) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    173905 8bc1:A (2.93) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    173906 8bc1:A (2.93) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    173907 8bc1:A (2.93) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    173908 8bc1:B (2.93) BS01 CA ? GO:0002407 ... Q6P9J9 36335104
    173909 8bc1:B (2.93) BS02 CA ? GO:0002407 ... Q6P9J9 36335104
    173910 8bc1:B (2.93) BS03 CA ? GO:0002407 ... Q6P9J9 36335104
    173911 8bc5:A (1.91) BS01 CA ? GO:0046872 ... A0A0B4VFQ3 37443157
    173912 8bc6:A (1.72) BS02 ZN ? GO:0046872 ... A4TVL0 36375252
    173913 8bc6:B (1.72) BS02 ZN ? GO:0046872 ... A4TVL0 36375252
    173914 8bc6:C (1.72) BS01 ZN ? GO:0046872 ... A4TVL0 36375252
    173915 8bc7:A (1.719) BS01 ZN ? GO:0046872 ... A4TVL0 36375252
    173916 8bc7:B (1.719) BS02 ZN ? GO:0046872 ... A4TVL0 36375252
    173917 8bc7:C (1.719) BS01 ZN ? GO:0046872 ... A4TVL0 36375252
    173918 8bck:A (1.96) BS01 CA ? GO:0046872 ... A0A0B4VFQ3 37443157
    173919 8bd2:A (-1.00) BS01 CA ? GO:0000086 ... P0DP25 37995470
    173920 8bd2:A (-1.00) BS02 CA ? GO:0000086 ... P0DP25 37995470
    173921 8bd3:A (2.73) BS02 FE2 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    173922 8bd3:D (2.73) BS01 FE2 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    173923 8bd3:a (2.73) BS02 FE2 1.10.3.9 GO:0005506 ... W8SIR2 37566050
    173924 8bd3:d (2.73) BS01 FE2 1.10.3.9 GO:0005506 ... W8SYD4 37566050
    173925 8bd4:A (3.44) BS02 ZN ? N/A A0A8J0PCL3 36435179
    173926 8bd4:C (3.44) BS02 ZN ? N/A A0A8J0PCL3 36435179
    173927 8bd4:R (3.44) BS01 ZN ? N/A A0A8J0PCL5 36435179
    173928 8bd4:R (3.44) BS02 ZN ? N/A A0A8J0PCL5 36435179
    173929 8bd4:S (3.44) BS01 ZN ? N/A A0A8J0PCL5 36435179
    173930 8bd4:S (3.44) BS02 ZN ? N/A A0A8J0PCL5 36435179
    173931 8bd4:T (3.44) BS01 ZN ? N/A A0A8J0PCL5 36435179
    173932 8bd4:T (3.44) BS02 ZN ? N/A A0A8J0PCL5 36435179
    173933 8bd5:Q (3.3) BS03 ZN ? N/A A0A8J0PCL5 36435179
    173934 8bd5:Q (3.3) BS04 ZN ? N/A A0A8J0PCL5 36435179
    173935 8bd6:Z (4.1) BS02 MG ? N/A A0A8J0PCL3 36435179
    173936 8bd8:A (3.1) BS02 ZN 2.3.2.27 N/A Q9UPN9 36430693
    173937 8bd8:A (3.1) BS03 ZN 2.3.2.27 N/A Q9UPN9 36430693
    173938 8bd9:A (3.2) BS02 ZN 2.3.2.27 N/A Q9UPN9 36430693
    173939 8bd9:A (3.2) BS03 ZN 2.3.2.27 N/A Q9UPN9 36430693
    173940 8bdb:A (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173941 8bdb:C (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173942 8bdb:E (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173943 8bdb:G (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173944 8bdb:I (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173945 8bdb:K (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173946 8bdb:M (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173947 8bdb:O (1.7) BS01 MG 4.1.1.39 GO:0000287 ... A7UM67 37291398
    173948 8bde:A (1.902) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    173949 8bde:C (1.902) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    173950 8bde:F (1.902) BS01 MG N/A GO:0036211 ... N/A 36876916
    173951 8bdf:A (1.95) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    173952 8bdf:F (1.95) BS02 MG N/A GO:0036211 ... N/A 36876916
    173953 8bdg:A (2.35) BS02 CA 3.6.5.- GO:0000226 ... P81947 36876916
    173954 8bdg:F (2.35) BS01 MG N/A GO:0036211 ... N/A 36876916
    173955 8bdr:B (2.7) BS04 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    173956 8bdy:A (3.05) BS02 ZN 2.3.2.27 N/A Q9UPN9 36430693
    173957 8bdy:A (3.05) BS03 ZN 2.3.2.27 N/A Q9UPN9 36430693
    173958 8be0:B (2.34) BS04 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    173959 8be0:B (2.34) BS05 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    173960 8bed:R (2.03) BS02 ZN ? GO:0005739 ... Q9M9M6 36585502
    173961 8bef:O (2.13) BS01 FE ? GO:0005515 ... Q9SRR8 36585502
    173962 8bef:y (2.13) BS02 ZN 4.2.1.- GO:0004089 ... Q9C6B3 36585502
    173963 8beg:A (1.84) BS01 MG ? N/A Q04112 37860966
    173964 8beg:B (1.84) BS01 MG ? N/A Q04112 37860966
    173965 8bek:B (2.86) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    173966 8beo:A (1.96) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173967 8beo:A (1.96) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173968 8beo:A (1.96) BS06 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173969 8beo:B (1.96) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173970 8beo:B (1.96) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173971 8beo:C (1.96) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173972 8beo:C (1.96) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173973 8beo:D (1.96) BS01 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173974 8beo:D (1.96) BS05 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173975 8beo:E (1.96) BS02 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173976 8beo:E (1.96) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173977 8beo:E (1.96) BS07 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173978 8beo:F (1.96) BS03 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173979 8beo:F (1.96) BS04 MG 4.1.1.47 GO:0000287 ... P0AEP7 N/A
    173980 8bep:B (2.29) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    173981 8bep:L (2.29) BS02 ZN 3.4.24.64 GO:0000325 ... Q42290 36585502
    173982 8bew:B (3.49) BS03 ZN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    173983 8bew:E (3.49) BS03 ZN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    173984 8bf5:B (2.96) BS05 MG 2.7.7.48 GO:0000166 ... Q5V8Y6 36596301
    173985 8bf6:A (1.969) BS01 FE N/A GO:0006826 ... N/A 37428843
    173986 8bfc:A (1.4) BS02 MG ? GO:0000122 ... P31947 36926879
    173987 8bfc:A (1.4) BS03 MG ? GO:0000122 ... P31947 36926879
    173988 8bgj:A (1.63) BS01 MG 2.7.7.49 GO:0003723 ... I7LG99 37279911
    173989 8bgj:B (1.63) BS01 MG 2.7.7.49 GO:0003723 ... I7LG99 37279911
    173990 8bgj:C (1.63) BS01 MG 2.7.7.49 GO:0003723 ... I7LG99 37279911
    173991 8bgn:A (2.76) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    173992 8bgn:B (2.76) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    173993 8bgn:C (2.76) BS01 ZN ? GO:0016811 ... A0A160VQZ8 36555375
    173994 8bgo:A (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    173995 8bgo:B (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    173996 8bgo:C (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    173997 8bgo:D (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    173998 8bgo:E (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    173999 8bgo:F (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    174000 8bgo:G (3.08) BS01 ZN 3.5.1.136 GO:0016811 ... A0A160VQZ8 36555375
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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