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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17201 1vzi:A (1.15) BS04 FE2 1.15.1.2 GO:0005506 ... Q46495 15341736
    17202 1vzi:B (1.15) BS01 CA 1.15.1.2 GO:0005506 ... Q46495 15341736
    17203 1vzi:B (1.15) BS02 FE2 1.15.1.2 GO:0005506 ... Q46495 15341736
    17204 1vzi:B (1.15) BS03 FE2 1.15.1.2 GO:0005506 ... Q46495 15341736
    17205 1vzm:A (1.4) BS01 MG ? GO:0005509 ... Q800Y1 15667217
    17206 1vzm:B (1.4) BS01 MG ? GO:0005509 ... Q800Y1 15667217
    17207 1vzm:B (1.4) BS02 MG ? GO:0005509 ... Q800Y1 15667217
    17208 1vzm:B (1.4) BS03 MG ? GO:0005509 ... Q800Y1 15667217
    17209 1vzm:C (1.4) BS01 MG ? GO:0005509 ... Q800Y1 15667217
    17210 1vzm:C (1.4) BS02 MG ? GO:0005509 ... Q800Y1 15667217
    17211 1vzm:C (1.4) BS03 MG ? GO:0005509 ... Q800Y1 15667217
    17212 1vzq:H (1.54) BS04 CA 3.4.21.5 GO:0004252 ... P00734 N/A
    17213 1vzt:A (2.0) BS01 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    17214 1vzt:B (2.0) BS01 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    17215 1vzu:A (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    17216 1vzu:B (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    17217 1vzx:A (1.97) BS02 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    17218 1vzx:B (1.97) BS02 MN 2.4.1.87 GO:0005975 ... P14769 15229192
    17219 1vzy:A (1.97) BS01 ZN ? GO:0005737 ... P37565 15458638
    17220 1vzy:B (1.97) BS01 ZN ? GO:0005737 ... P37565 15458638
    17221 1w03:A (2.1) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 15850395
    17222 1w04:A (1.28) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 15850395
    17223 1w05:A (2.46) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 15850395
    17224 1w06:A (1.65) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 15850395
    17225 1w07:A (2.0) BS02 CA 1.3.3.6 GO:0001676 ... O65202 15581893
    17226 1w0h:A (1.59) BS01 MG 3.1.-.- GO:0000175 ... Q8IV48 15451662
    17227 1w0h:A (1.59) BS02 MG 3.1.-.- GO:0000175 ... Q8IV48 15451662
    17228 1w0n:A (0.8) BS01 CA 3.2.1.55 GO:0030246 ... P45796 15242594
    17229 1w0n:A (0.8) BS02 MG 3.2.1.55 GO:0030246 ... P45796 15242594
    17230 1w0o:A (1.9) BS02 CA 3.2.1.18 GO:0004308 ... P0C6E9 15226294
    17231 1w0o:A (1.9) BS03 CA 3.2.1.18 GO:0004308 ... P0C6E9 15226294
    17232 1w0o:A (1.9) BS04 CA 3.2.1.18 GO:0004308 ... P0C6E9 15226294
    17233 1w0p:A (1.6) BS01 CA 3.2.1.18 GO:0004308 ... P0C6E9 15226294
    17234 1w0p:A (1.6) BS02 CA 3.2.1.18 GO:0004308 ... P0C6E9 15226294
    17235 1w0p:A (1.6) BS03 CA 3.2.1.18 GO:0004308 ... P0C6E9 15226294
    17236 1w0y:H (2.5) BS02 CA 3.4.21.21 GO:0004252 ... P08709 15664864
    17237 1w0y:L (2.5) BS02 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17238 1w0y:L (2.5) BS03 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17239 1w0y:L (2.5) BS04 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17240 1w0y:L (2.5) BS05 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17241 1w0y:L (2.5) BS06 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17242 1w0y:L (2.5) BS07 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17243 1w0y:L (2.5) BS08 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17244 1w15:A (1.93) BS01 CA ? GO:0016020 ... P50232 15311271
    17245 1w15:A (1.93) BS02 CA ? GO:0016020 ... P50232 15311271
    17246 1w1i:E (3.03) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 15213224
    17247 1w1i:F (3.03) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 15213224
    17248 1w1i:G (3.03) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 15213224
    17249 1w1i:H (3.03) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 15213224
    17250 1w1w:A (2.9) BS01 MG ? GO:0005524 ... P32908 15383284
    17251 1w1w:B (2.9) BS02 MG ? GO:0005524 ... P32908 15383284
    17252 1w1w:C (2.9) BS01 MG ? GO:0005524 ... P32908 15383284
    17253 1w1w:D (2.9) BS02 MG ? GO:0005524 ... P32908 15383284
    17254 1w1x:A (2.0) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17255 1w1x:B (2.0) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17256 1w1x:C (2.0) BS05 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17257 1w1x:D (2.0) BS03 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17258 1w20:A (2.08) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17259 1w20:B (2.08) BS07 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17260 1w20:C (2.08) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17261 1w20:D (2.08) BS04 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17262 1w21:A (2.08) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17263 1w21:B (2.08) BS07 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17264 1w21:C (2.08) BS06 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17265 1w21:D (2.08) BS04 CA 3.2.1.18 GO:0004308 ... Q6XV27 N/A
    17266 1w22:A (2.5) BS01 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15477595
    17267 1w22:A (2.5) BS02 K 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15477595
    17268 1w22:A (2.5) BS03 K 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15477595
    17269 1w22:B (2.5) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15477595
    17270 1w22:B (2.5) BS03 K 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15477595
    17271 1w22:B (2.5) BS04 K 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 15477595
    17272 1w23:B (1.08) BS02 MG 2.6.1.52 GO:0004648 ... Q9RME2 15608117
    17273 1w25:A (2.7) BS01 MG 2.7.7.65 GO:0000160 ... B8GZM2 15569936 Manual survey: Ki=0.5uM (15569936)
    17274 1w25:B (2.7) BS01 MG 2.7.7.65 GO:0000160 ... B8GZM2 15569936 Manual survey: Ki=0.5uM (15569936)
    17275 1w2a:X (2.51) BS01 FE 1.14.20.1 GO:0005506 ... P18548 15381427
    17276 1w2b:2 (3.5) BS02 MG ? GO:0000049 ... P32411 15334087
    17277 1w2b:S (3.5) BS02 MG ? GO:0002181 ... P10972 15334087
    17278 1w2b:X (3.5) BS02 MG ? GO:0000166 ... P12736 15334087
    17279 1w2k:H (3.0) BS02 CA 3.4.21.21 GO:0004252 ... P08709 15664864
    17280 1w2k:L (3.0) BS02 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17281 1w2k:L (3.0) BS03 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17282 1w2k:L (3.0) BS04 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17283 1w2k:L (3.0) BS05 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17284 1w2k:L (3.0) BS06 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17285 1w2k:L (3.0) BS07 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17286 1w2k:L (3.0) BS08 CA 3.4.21.21 GO:0005509 ... P08709 15664864
    17287 1w2m:A (2.4) BS01 CA 3.4.11.9 GO:0004177 ... P15034 16229471
    17288 1w2m:B (2.4) BS01 CA 3.4.11.9 GO:0004177 ... P15034 16229471
    17289 1w2m:C (2.4) BS01 CA 3.4.11.9 GO:0004177 ... P15034 16229471
    17290 1w2m:D (2.4) BS01 CA 3.4.11.9 GO:0004177 ... P15034 16229471
    17291 1w2m:E (2.4) BS01 CA 3.4.11.9 GO:0004177 ... P15034 16229471
    17292 1w2m:F (2.4) BS01 CA 3.4.11.9 GO:0004177 ... P15034 16229471
    17293 1w2n:A (2.7) BS01 FE 1.14.20.1 GO:0005506 ... P18548 15381427
    17294 1w2o:A (3.0) BS01 FE 1.14.20.1 GO:0005506 ... P18548 15381427
    17295 1w2p:A (1.45) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17296 1w2p:B (1.45) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17297 1w2v:A (1.55) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17298 1w2v:B (1.55) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17299 1w2y:A (1.65) BS02 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    17300 1w2y:A (1.65) BS03 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    17301 1w2y:A (1.65) BS04 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    17302 1w2y:B (1.65) BS03 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    17303 1w2y:B (1.65) BS04 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    17304 1w2y:B (1.65) BS05 MG 3.6.1.23 GO:0004170 ... Q0P8G4 15364583
    17305 1w2z:A (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    17306 1w2z:A (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    17307 1w2z:B (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    17308 1w2z:B (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    17309 1w2z:C (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    17310 1w2z:C (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    17311 1w2z:D (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    17312 1w2z:D (2.24) BS02 MN 1.4.3.21 GO:0005507 ... Q43077 15533431
    17313 1w31:A (1.9) BS02 ZN 4.2.1.24 GO:0004655 ... P05373 16131755
    17314 1w32:A (1.2) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17315 1w32:B (1.2) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17316 1w36:B (3.1) BS02 CA 3.1.11.5
    5.6.2.4
    GO:0000287 ... P08394 15538360
    17317 1w36:E (3.1) BS02 CA 3.1.11.5
    5.6.2.4
    GO:0000287 ... P08394 15538360
    17318 1w3b:A (2.85) BS01 CA 2.4.1.255 N/A O15294 15361863
    17319 1w3h:A (1.5) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17320 1w3h:B (1.5) BS01 CA 3.2.1.8 GO:0004553 ... P14768 15452124
    17321 1w3s:A (2.4) BS01 ZN ? GO:0006281 ... Q9RW50 15719017
    17322 1w3s:B (2.4) BS01 ZN ? GO:0006281 ... Q9RW50 15719017
    17323 1w3v:A (1.4) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 16444759
    17324 1w3w:A (1.99) BS01 CA ? GO:0001786 ... P13928 15644210
    17325 1w3x:A (1.46) BS01 FE2 1.21.3.1 GO:0005506 ... P05326 16444759
    17326 1w4n:A (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    17327 1w4n:B (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    17328 1w4r:A (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17329 1w4r:B (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17330 1w4r:C (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17331 1w4r:D (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17332 1w4r:E (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17333 1w4r:F (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17334 1w4r:G (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17335 1w4r:H (1.83) BS02 ZN 2.7.1.21 GO:0004797 ... P04183 15733844
    17336 1w4w:A (1.55) BS02 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    17337 1w4w:A (1.55) BS03 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    17338 1w4y:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    17339 1w4y:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 15641789
    17340 1w52:X (2.99) BS01 CA 3.1.1.26
    3.1.1.3
    GO:0004806 ... Q95KP4 15502342
    17341 1w52:X (2.99) BS02 CA 3.1.1.26
    3.1.1.3
    GO:0004806 ... Q95KP4 15502342
    17342 1w54:A (2.2) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17343 1w56:A (1.7) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17344 1w56:B (1.7) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17345 1w57:A (3.09) BS01 ZN 2.7.7.60
    4.6.1.12
    GO:0003824 ... Q9PM68 15466439
    17346 1w5c:A (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    17347 1w5c:A (3.2) BS07 FE2 1.10.3.9 GO:0005506 ... P0A444 N/A
    17348 1w5c:D (3.2) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    17349 1w5c:G (3.2) BS06 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    17350 1w5c:G (3.2) BS07 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    17351 1w5c:G (3.2) BS08 MN 1.10.3.9 GO:0005506 ... P0A444 N/A
    17352 1w5c:G (3.2) BS09 FE2 1.10.3.9 GO:0005506 ... P0A444 N/A
    17353 1w5c:J (3.2) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    17354 1w5d:A (2.1) BS01 CA 3.4.16.4 GO:0000270 ... P39844 17582436
    17355 1w5d:A (2.1) BS02 CA 3.4.16.4 GO:0000270 ... P39844 17582436
    17356 1w5m:A (1.6) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17357 1w5m:B (1.6) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17358 1w5n:A (1.65) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17359 1w5n:B (1.65) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17360 1w5o:A (1.85) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17361 1w5o:B (1.85) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17362 1w5p:A (1.55) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17363 1w5p:B (1.55) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17364 1w5q:A (1.4) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17365 1w5q:B (1.4) BS01 ZN 4.2.1.24 GO:0004655 ... Q59643 15644204
    17366 1w5z:A (1.86) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    17367 1w69:A (2.2) BS01 FE2 1.17.4.1 GO:0001824 ... P11157 15322079
    17368 1w69:A (2.2) BS02 FE2 1.17.4.1 GO:0001824 ... P11157 15322079
    17369 1w6c:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    17370 1w6c:A (2.2) BS02 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    17371 1w6g:A (1.55) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    17372 1w6g:A (1.55) BS02 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    17373 1w6l:A (2.0) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17374 1w6l:A (2.0) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17375 1w6l:A (2.0) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17376 1w6l:A (2.0) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17377 1w6r:A (2.05) BS02 MG 3.1.1.7 GO:0001507 ... P04058 15563167
    17378 1w6s:A (1.2) BS02 CA 1.1.2.7 GO:0005509 ... P16027 15608378
    17379 1w6s:C (1.2) BS02 CA 1.1.2.7 GO:0005509 ... P16027 15608378
    17380 1w6t:A (2.1) BS01 MG 4.2.1.11 GO:0000015 ... Q97QS2 15476816
    17381 1w6t:B (2.1) BS01 MG 4.2.1.11 GO:0000015 ... Q97QS2 15476816
    17382 1w6w:A (2.2) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17383 1w6w:A (2.2) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17384 1w6w:A (2.2) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17385 1w6w:A (2.2) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    17386 1w6z:A (1.65) BS01 HO3 3.2.1.17 GO:0003796 ... P00698 N/A
    17387 1w77:A (2.0) BS01 CU 2.7.7.60 GO:0003824 ... P69834 16478479
    17388 1w78:A (1.82) BS02 MG 6.3.2.12
    6.3.2.17
    GO:0004326 ... P08192 15705579
    17389 1w79:A (1.8) BS01 MG 3.4.16.4 GO:0000270 ... P39045 15987687
    17390 1w7c:A (1.23) BS01 CU 1.4.3.- GO:0005507 ... Q96X16 16929109
    17391 1w7c:A (1.23) BS02 CA 1.4.3.- GO:0005507 ... Q96X16 16929109
    17392 1w7c:A (1.23) BS03 CA 1.4.3.- GO:0005507 ... Q96X16 16929109
    17393 1w7j:A (2.0) BS01 MG ? GO:0003774 ... Q02440 15510214
    17394 1w7k:A (2.1) BS02 MG 6.3.2.12
    6.3.2.17
    GO:0004326 ... P08192 15705579
    17395 1w7v:A (2.0) BS02 ZN 3.4.11.9 GO:0004177 ... P15034 16229471
    17396 1w7v:A (2.0) BS03 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    17397 1w7v:B (2.0) BS02 ZN 3.4.11.9 GO:0004177 ... P15034 16229471
    17398 1w7v:B (2.0) BS03 MG 3.4.11.9 GO:0004177 ... P15034 16229471
    17399 1w7v:C (2.0) BS02 ZN 3.4.11.9 GO:0004177 ... P15034 16229471
    17400 1w7v:C (2.0) BS03 MG 3.4.11.9 GO:0004177 ... P15034 16229471

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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