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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172401 8a31:A (1.46) BS02 ZN ? GO:0000976 ... P04637 36407959
    172402 8a31:B (1.46) BS02 ZN ? GO:0000976 ... P04637 36407959
    172403 8a32:A (1.47) BS02 ZN ? GO:0000976 ... P04637 36407959
    172404 8a32:B (1.47) BS02 ZN ? GO:0000976 ... P04637 36407959
    172405 8a38:A (2.196) BS01 ZN 2.3.2.27 N/A Q9C040 N/A
    172406 8a38:A (2.196) BS02 ZN 2.3.2.27 N/A Q9C040 N/A
    172407 8a38:B (2.196) BS01 ZN 2.3.2.27 N/A Q9C040 N/A
    172408 8a38:B (2.196) BS02 ZN 2.3.2.27 N/A Q9C040 N/A
    172409 8a38:C (2.196) BS01 ZN 2.3.2.27 N/A Q9C040 N/A
    172410 8a38:C (2.196) BS02 ZN 2.3.2.27 N/A Q9C040 N/A
    172411 8a3d:a (1.67) BS02 ZN ? GO:0002181 ... P49207 36909531
    172412 8a3d:d (1.67) BS03 ZN ? GO:0002181 ... P61927 36909531
    172413 8a3d:g (1.67) BS02 ZN ? GO:0003735 ... P62987 36909531
    172414 8a3d:i (1.67) BS02 ZN ? GO:0002181 ... P83881 36909531
    172415 8a3d:j (1.67) BS02 ZN ? GO:0002181 ... P61513 36909531
    172416 8a3l:3 (3.42) BS02 ZN ? GO:0002181 ... P0A7Q6 36840711
    172417 8a3l:4 (3.42) BS03 ZN ? GO:0002181 ... P0A7M9 36840711
    172418 8a3l:c (3.42) BS02 MG ? GO:0000027 ... P60422 36840711
    172419 8a3l:c (3.42) BS03 MG ? GO:0000027 ... P60422 36840711
    172420 8a3n:A (2.0) BS02 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    172421 8a3n:A (2.0) BS03 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    172422 8a3n:B (2.0) BS02 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    172423 8a3n:B (2.0) BS03 ZN 1.3.1.36 GO:0008270 ... W8JWW7 36198083
    172424 8a3t:U (3.5) BS01 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    172425 8a3t:U (3.5) BS02 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    172426 8a3t:U (3.5) BS03 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    172427 8a3v:A (2.9) BS02 MG 3.6.4.12 GO:0003677 ... A0A085R2T8 36762863
    172428 8a3v:B (2.9) BS03 MG 3.6.4.12 GO:0003677 ... A0A085R2T8 36762863
    172429 8a3w:SS (2.89) BS02 ZN ? GO:0002181 ... Q4Q817 N/A
    172430 8a3w:Sb (2.89) BS02 ZN ? GO:0003729 ... Q4Q8L6 N/A
    172431 8a3w:f (2.89) BS02 MG ? GO:0003735 ... Q4QC11 N/A
    172432 8a3w:j (2.89) BS04 ZN ? GO:0003723 ... E9AEH2 N/A
    172433 8a3w:o (2.89) BS04 ZN ? GO:0003735 ... Q4QC01 N/A
    172434 8a3y:A (3.3) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 35858621
    172435 8a3y:A (3.3) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 35858621
    172436 8a3y:C (3.3) BS01 ZN N/A GO:0000428 ... I3LCH3 35858621
    172437 8a3y:I (3.3) BS01 ZN N/A GO:0000428 ... P60899 35858621
    172438 8a3y:I (3.3) BS02 ZN N/A GO:0000428 ... P60899 35858621
    172439 8a3y:J (3.3) BS01 ZN N/A GO:0000428 ... A0A4X1VYD0 35858621
    172440 8a3y:L (3.3) BS01 ZN N/A GO:0046872 ... A0A8D0JYF1 35858621
    172441 8a3y:Y (3.3) BS01 ZN N/A GO:0000993 ... Q4R941 35858621
    172442 8a40:A (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    172443 8a40:A (3.0) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    172444 8a40:A (3.0) BS06 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    172445 8a40:A (3.0) BS07 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 35858621
    172446 8a40:B (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 35858621
    172447 8a40:B (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 35858621
    172448 8a40:I (3.0) BS01 ZN ? GO:0000428 ... P60899 35858621
    172449 8a40:I (3.0) BS02 ZN ? GO:0000428 ... P60899 35858621
    172450 8a40:I (3.0) BS03 ZN ? GO:0000428 ... P60899 35858621
    172451 8a45:A (2.0) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172452 8a45:A (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172453 8a45:A (2.0) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172454 8a45:B (2.0) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172455 8a45:C (2.0) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172456 8a45:D (2.0) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172457 8a45:D (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172458 8a45:D (2.0) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172459 8a45:D (2.0) BS05 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172460 8a45:E (2.0) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172461 8a45:E (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172462 8a45:F (2.0) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172463 8a45:F (2.0) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172464 8a45:F (2.0) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172465 8a45:F (2.0) BS05 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172466 8a4a:B (2.52) BS02 MG ? GO:0003924 ... P10949 35871249
    172467 8a4b:B (2.8) BS02 MG ? GO:0003924 ... P20337 35871249
    172468 8a4b:D (2.8) BS02 MG ? GO:0003924 ... P20337 35871249
    172469 8a4c:B (2.75) BS02 MG ? GO:0003924 ... P20337 35871249
    172470 8a4c:D (2.75) BS02 MG ? GO:0003924 ... P20337 35871249
    172471 8a4d:A (2.2) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172472 8a4d:A (2.2) BS03 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172473 8a4d:B (2.2) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172474 8a4d:C (2.2) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172475 8a4d:D (2.2) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172476 8a4d:E (2.2) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172477 8a4d:E (2.2) BS03 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172478 8a4d:F (2.2) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172479 8a4d:F (2.2) BS03 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172480 8a4d:F (2.2) BS04 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172481 8a4d:F (2.2) BS05 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172482 8a4i:I (2.76) BS03 ZN ? N/A Q8BX22 36635047
    172483 8a4i:I (2.76) BS04 ZN ? N/A Q8BX22 36635047
    172484 8a4i:J (2.76) BS02 ZN ? N/A Q8BX22 36635047
    172485 8a4i:J (2.76) BS03 ZN ? N/A Q8BX22 36635047
    172486 8a4i:K (2.76) BS02 ZN ? N/A Q8BX22 36635047
    172487 8a4i:K (2.76) BS03 ZN ? N/A Q8BX22 36635047
    172488 8a4i:L (2.76) BS03 ZN ? N/A Q8BX22 36635047
    172489 8a4i:L (2.76) BS04 ZN ? N/A Q8BX22 36635047
    172490 8a4m:A (1.98) BS01 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 36450011
    172491 8a4m:A (1.98) BS02 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 36450011
    172492 8a57:5 (2.3) BS02 ZN ? GO:0003735 ... P66207 36300626
    172493 8a57:9 (2.3) BS02 ZN ? GO:0003735 ... P66290 36300626
    172494 8a57:D (2.3) BS03 MG ? GO:0003924 ... Q8Y8Y0 36300626
    172495 8a58:C (2.25) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 37061529
    172496 8a58:C (2.25) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 37061529
    172497 8a58:D (2.25) BS01 ZN 2.3.2.27 GO:0004842 ... P19474 37061529
    172498 8a58:D (2.25) BS02 ZN 2.3.2.27 GO:0004842 ... P19474 37061529
    172499 8a5c:A (1.951) BS02 MG ? GO:0000703 ... Q9RRQ0 35807515
    172500 8a5e:B (3.4) BS01 ZN 1.12.7.2 GO:0008137 ... H6LFG4 36811855
    172501 8a5f:A (1.38) BS01 MG ? GO:0000703 ... Q9RRQ0 35807515
    172502 8a5f:A (1.38) BS02 MG ? GO:0000703 ... Q9RRQ0 35807515
    172503 8a5i:5 (2.3) BS02 ZN ? GO:0003735 ... P66207 36300626
    172504 8a5i:9 (2.3) BS02 ZN ? GO:0003735 ... P66290 36300626
    172505 8a5k:A (2.3) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172506 8a5k:B (2.3) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172507 8a5k:B (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172508 8a5k:C (2.3) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172509 8a5k:C (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172510 8a5k:D (2.3) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172511 8a5k:D (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172512 8a5k:E (2.3) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172513 8a5k:F (2.3) BS02 MG 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172514 8a5k:F (2.3) BS03 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172515 8a5k:F (2.3) BS04 CA 2.2.1.7 GO:0003824 ... B7V7R4 37567475
    172516 8a5n:AAA (1.52) BS01 FE 1.16.3.1 GO:0004322 ... P02794 36714262
    172517 8a5n:AAA (1.52) BS02 MG 1.16.3.1 GO:0004322 ... P02794 36714262
    172518 8a5n:AAA (1.52) BS03 MG 1.16.3.1 GO:0004322 ... P02794 36714262
    172519 8a5y:U (4.9) BS01 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    172520 8a5y:U (4.9) BS02 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    172521 8a5y:U (4.9) BS03 ZN 6.3.2.- GO:0005634 ... Q12157 N/A
    172522 8a63:5 (3.1) BS02 ZN ? GO:0003735 ... P66207 36300626
    172523 8a63:9 (3.1) BS02 ZN ? GO:0003735 ... P66290 36300626
    172524 8a67:D (1.86) BS01 ZN N/A N/A N/A 38977901
    172525 8a67:H (1.86) BS01 ZN N/A N/A N/A 38977901
    172526 8a6t:B (3.1) BS03 ZN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    172527 8a6t:E (3.1) BS03 ZN 1.12.1.3 GO:0008137 ... A0A097ATG4 36811855
    172528 8a6v:A (1.9) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172529 8a6v:A (1.9) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172530 8a6v:B (1.9) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172531 8a6v:B (1.9) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172532 8a6z:A (2.4) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172533 8a6z:A (2.4) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172534 8a6z:B (2.4) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172535 8a6z:B (2.4) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172536 8a6z:C (2.4) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172537 8a6z:C (2.4) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172538 8a6z:D (2.4) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172539 8a6z:D (2.4) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172540 8a6z:E (2.4) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172541 8a6z:E (2.4) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172542 8a6z:F (2.4) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172543 8a6z:F (2.4) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172544 8a70:A (2.1) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172545 8a70:A (2.1) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172546 8a73:A (1.6) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172547 8a73:A (1.6) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172548 8a74:A (1.9) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172549 8a74:A (1.9) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172550 8a74:B (1.9) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172551 8a74:B (1.9) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172552 8a76:A (1.5) BS01 ZN 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172553 8a76:A (1.5) BS02 ZN 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172554 8a76:A (1.5) BS03 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172555 8a76:A (1.5) BS05 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172556 8a76:B (1.5) BS01 ZN 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172557 8a76:B (1.5) BS02 ZN 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172558 8a76:B (1.5) BS03 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172559 8a76:B (1.5) BS04 CA 3.5.2.6 GO:0016787 ... M4JT39 36450011
    172560 8a78:A (1.6) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172561 8a78:A (1.6) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172562 8a7a:A (1.6) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172563 8a7a:A (1.6) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172564 8a7b:A (1.65) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172565 8a7b:A (1.65) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172566 8a7c:A (1.2) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172567 8a7c:A (1.2) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172568 8a7c:B (1.2) BS01 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172569 8a7c:B (1.2) BS02 MG 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172570 8a7d:C (3.06) BS01 ZN 3.4.24.79 GO:0004175 ... Q13219 36257932
    172571 8a7d:C (3.06) BS02 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172572 8a7d:C (3.06) BS03 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172573 8a7d:C (3.06) BS04 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172574 8a7d:C (3.06) BS05 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172575 8a7d:C (3.06) BS06 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172576 8a7d:C (3.06) BS07 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172577 8a7d:C (3.06) BS08 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172578 8a7d:Q (3.06) BS01 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172579 8a7e:C (5.02) BS01 ZN 3.4.24.79 GO:0004175 ... Q13219 36257932
    172580 8a7e:C (5.02) BS02 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172581 8a7e:C (5.02) BS03 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172582 8a7e:C (5.02) BS04 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172583 8a7e:C (5.02) BS05 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172584 8a7e:C (5.02) BS06 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172585 8a7e:C (5.02) BS07 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172586 8a7e:C (5.02) BS08 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172587 8a7e:C (5.02) BS09 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172588 8a7e:Q (5.02) BS01 ZN 3.4.24.79 GO:0004175 ... Q13219 36257932
    172589 8a7e:Q (5.02) BS02 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172590 8a7e:Q (5.02) BS03 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172591 8a7e:Q (5.02) BS04 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172592 8a7e:Q (5.02) BS05 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172593 8a7e:Q (5.02) BS06 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172594 8a7e:Q (5.02) BS07 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172595 8a7e:Q (5.02) BS08 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172596 8a7e:Q (5.02) BS09 CA 3.4.24.79 GO:0004175 ... Q13219 36257932
    172597 8a7j:A (1.2) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172598 8a7j:A (1.2) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172599 8a7j:B (1.2) BS01 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711
    172600 8a7j:B (1.2) BS02 MN 2.5.1.1 GO:0004659 ... M1JS91 37308711

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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