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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17001 1vy6:AN (2.9) BS02 ZN N/A GO:0003735 ... N/A 25132179
    17002 1vy6:B0 (2.9) BS04 MG ? GO:0003735 ... P60493 25132179
    17003 1vy6:B0 (2.9) BS05 MG ? GO:0003735 ... P60493 25132179
    17004 1vy6:B4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    17005 1vy6:B5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    17006 1vy6:B5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    17007 1vy6:B6 (2.9) BS02 MG ? GO:0000049 ... P35871 25132179
    17008 1vy6:B6 (2.9) BS03 ZN ? GO:0000049 ... P35871 25132179
    17009 1vy6:B7 (2.9) BS02 MG ? GO:0003735 ... P80340 25132179
    17010 1vy6:B7 (2.9) BS03 MG ? GO:0003735 ... P80340 25132179
    17011 1vy6:B9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    17012 1vy6:BD (2.9) BS02 MG ? GO:0002181 ... P60405 25132179
    17013 1vy6:BD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    17014 1vy6:BD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    17015 1vy6:BD (2.9) BS05 MG ? GO:0002181 ... P60405 25132179
    17016 1vy6:BD (2.9) BS06 MG ? GO:0002181 ... P60405 25132179
    17017 1vy6:BD (2.9) BS07 MG ? GO:0002181 ... P60405 25132179
    17018 1vy6:BE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    17019 1vy6:BE (2.9) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    17020 1vy6:BF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    17021 1vy6:BF (2.9) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    17022 1vy6:BF (2.9) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    17023 1vy6:BG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    17024 1vy6:BG (2.9) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    17025 1vy6:BN (2.9) BS02 MG ? GO:0003729 ... P60488 25132179
    17026 1vy6:BP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    17027 1vy6:BP (2.9) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    17028 1vy6:BQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    17029 1vy6:BQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    17030 1vy6:BR (2.9) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    17031 1vy6:BR (2.9) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    17032 1vy6:BU (2.9) BS02 MG ? GO:0000027 ... P60491 25132179
    17033 1vy6:BV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    17034 1vy6:BV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    17035 1vy6:BV (2.9) BS04 MG ? GO:0003723 ... P60492 25132179
    17036 1vy6:BV (2.9) BS05 MG ? GO:0003723 ... P60492 25132179
    17037 1vy6:BW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    17038 1vy6:BW (2.9) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    17039 1vy6:BY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    17040 1vy6:CE (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    17041 1vy6:CE (2.9) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    17042 1vy6:CK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    17043 1vy6:CN (2.9) BS02 ZN N/A GO:0003735 ... N/A 25132179
    17044 1vy6:CT (2.9) BS02 MG ? GO:0003723 ... P80380 25132179
    17045 1vy6:D1 (2.9) BS02 MG ? GO:0003735 ... P60494 25132179
    17046 1vy6:D3 (2.9) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    17047 1vy6:D4 (2.9) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    17048 1vy6:D5 (2.9) BS02 MG ? GO:0003735 ... P80339 25132179
    17049 1vy6:D5 (2.9) BS03 ZN ? GO:0003735 ... P80339 25132179
    17050 1vy6:D5 (2.9) BS04 MG ? GO:0003735 ... P80339 25132179
    17051 1vy6:D6 (2.9) BS02 ZN ? GO:0000049 ... P35871 25132179
    17052 1vy6:D9 (2.9) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    17053 1vy6:DD (2.9) BS03 MG ? GO:0002181 ... P60405 25132179
    17054 1vy6:DD (2.9) BS04 MG ? GO:0002181 ... P60405 25132179
    17055 1vy6:DE (2.9) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    17056 1vy6:DF (2.9) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    17057 1vy6:DG (2.9) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    17058 1vy6:DP (2.9) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    17059 1vy6:DQ (2.9) BS03 MG ? GO:0000049 ... P60489 25132179
    17060 1vy6:DQ (2.9) BS04 MG ? GO:0000049 ... P60489 25132179
    17061 1vy6:DQ (2.9) BS05 MG ? GO:0000049 ... P60489 25132179
    17062 1vy6:DV (2.9) BS02 MG ? GO:0003723 ... P60492 25132179
    17063 1vy6:DV (2.9) BS03 MG ? GO:0003723 ... P60492 25132179
    17064 1vy6:DW (2.9) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    17065 1vy6:DY (2.9) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    17066 1vy7:AE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    17067 1vy7:AE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    17068 1vy7:AK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    17069 1vy7:AL (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    17070 1vy7:AM (2.8) BS04 MG ? GO:0000049 ... P80377 25132179
    17071 1vy7:AN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25132179
    17072 1vy7:B0 (2.8) BS04 MG ? GO:0003735 ... P60493 25132179
    17073 1vy7:B0 (2.8) BS05 MG ? GO:0003735 ... P60493 25132179
    17074 1vy7:B0 (2.8) BS06 MG ? GO:0003735 ... P60493 25132179
    17075 1vy7:B1 (2.8) BS03 MG ? GO:0003735 ... P60494 25132179
    17076 1vy7:B3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    17077 1vy7:B4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    17078 1vy7:B5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    17079 1vy7:B5 (2.8) BS03 MG ? GO:0003735 ... P80339 25132179
    17080 1vy7:B5 (2.8) BS04 ZN ? GO:0003735 ... P80339 25132179
    17081 1vy7:B6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25132179
    17082 1vy7:B7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    17083 1vy7:B9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    17084 1vy7:BD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    17085 1vy7:BD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    17086 1vy7:BD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    17087 1vy7:BD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    17088 1vy7:BD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    17089 1vy7:BD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    17090 1vy7:BD (2.8) BS09 MG ? GO:0002181 ... P60405 25132179
    17091 1vy7:BD (2.8) BS10 MG ? GO:0002181 ... P60405 25132179
    17092 1vy7:BD (2.8) BS11 MG ? GO:0002181 ... P60405 25132179
    17093 1vy7:BD (2.8) BS12 MG ? GO:0002181 ... P60405 25132179
    17094 1vy7:BE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    17095 1vy7:BE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    17096 1vy7:BE (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    17097 1vy7:BE (2.8) BS05 MG ? GO:0003735 ... Q5SHN8 25132179
    17098 1vy7:BF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    17099 1vy7:BF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    17100 1vy7:BF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    17101 1vy7:BF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    17102 1vy7:BF (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    17103 1vy7:BG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    17104 1vy7:BN (2.8) BS02 MG ? GO:0003729 ... P60488 25132179
    17105 1vy7:BN (2.8) BS03 MG ? GO:0003729 ... P60488 25132179
    17106 1vy7:BN (2.8) BS04 MG ? GO:0003729 ... P60488 25132179
    17107 1vy7:BP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    17108 1vy7:BP (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    17109 1vy7:BQ (2.8) BS03 MG ? GO:0000049 ... P60489 25132179
    17110 1vy7:BQ (2.8) BS04 MG ? GO:0000049 ... P60489 25132179
    17111 1vy7:BQ (2.8) BS05 MG ? GO:0000049 ... P60489 25132179
    17112 1vy7:BQ (2.8) BS06 MG ? GO:0000049 ... P60489 25132179
    17113 1vy7:BR (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    17114 1vy7:BR (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    17115 1vy7:BR (2.8) BS04 MG ? GO:0003735 ... Q9Z9H5 25132179
    17116 1vy7:BU (2.8) BS02 MG ? GO:0000027 ... P60491 25132179
    17117 1vy7:BU (2.8) BS03 MG ? GO:0000027 ... P60491 25132179
    17118 1vy7:BU (2.8) BS04 MG ? GO:0000027 ... P60491 25132179
    17119 1vy7:BU (2.8) BS05 MG ? GO:0000027 ... P60491 25132179
    17120 1vy7:BU (2.8) BS06 MG ? GO:0000027 ... P60491 25132179
    17121 1vy7:BU (2.8) BS07 MG ? GO:0000027 ... P60491 25132179
    17122 1vy7:BU (2.8) BS08 MG ? GO:0000027 ... P60491 25132179
    17123 1vy7:BV (2.8) BS02 MG ? GO:0003723 ... P60492 25132179
    17124 1vy7:BV (2.8) BS03 MG ? GO:0003723 ... P60492 25132179
    17125 1vy7:BV (2.8) BS04 MG ? GO:0003723 ... P60492 25132179
    17126 1vy7:BV (2.8) BS05 MG ? GO:0003723 ... P60492 25132179
    17127 1vy7:BV (2.8) BS06 MG ? GO:0003723 ... P60492 25132179
    17128 1vy7:BW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    17129 1vy7:BW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    17130 1vy7:BX (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    17131 1vy7:BX (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    17132 1vy7:BY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    17133 1vy7:CE (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    17134 1vy7:CE (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    17135 1vy7:CF (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    17136 1vy7:CK (2.8) BS02 MG ? GO:0003735 ... P80376 25132179
    17137 1vy7:CN (2.8) BS02 ZN N/A GO:0003735 ... N/A 25132179
    17138 1vy7:CT (2.8) BS02 MG ? GO:0003723 ... P80380 25132179
    17139 1vy7:D3 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    17140 1vy7:D4 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    17141 1vy7:D5 (2.8) BS02 MG ? GO:0003735 ... P80339 25132179
    17142 1vy7:D5 (2.8) BS03 ZN ? GO:0003735 ... P80339 25132179
    17143 1vy7:D6 (2.8) BS02 ZN ? GO:0000049 ... P35871 25132179
    17144 1vy7:D7 (2.8) BS02 MG ? GO:0003735 ... P80340 25132179
    17145 1vy7:D9 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    17146 1vy7:DD (2.8) BS03 MG ? GO:0002181 ... P60405 25132179
    17147 1vy7:DD (2.8) BS04 MG ? GO:0002181 ... P60405 25132179
    17148 1vy7:DD (2.8) BS05 MG ? GO:0002181 ... P60405 25132179
    17149 1vy7:DD (2.8) BS06 MG ? GO:0002181 ... P60405 25132179
    17150 1vy7:DD (2.8) BS07 MG ? GO:0002181 ... P60405 25132179
    17151 1vy7:DD (2.8) BS08 MG ? GO:0002181 ... P60405 25132179
    17152 1vy7:DE (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    17153 1vy7:DE (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    17154 1vy7:DF (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    17155 1vy7:DF (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    17156 1vy7:DF (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    17157 1vy7:DF (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    17158 1vy7:DG (2.8) BS03 MG ? GO:0000049 ... Q5SHQ0 25132179
    17159 1vy7:DP (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    17160 1vy7:DQ (2.8) BS03 MG ? GO:0000049 ... P60489 25132179
    17161 1vy7:DQ (2.8) BS04 MG ? GO:0000049 ... P60489 25132179
    17162 1vy7:DQ (2.8) BS05 MG ? GO:0000049 ... P60489 25132179
    17163 1vy7:DU (2.8) BS02 MG ? GO:0000027 ... P60491 25132179
    17164 1vy7:DU (2.8) BS03 MG ? GO:0000027 ... P60491 25132179
    17165 1vy7:DU (2.8) BS04 MG ? GO:0000027 ... P60491 25132179
    17166 1vy7:DV (2.8) BS02 MG ? GO:0003723 ... P60492 25132179
    17167 1vy7:DV (2.8) BS03 MG ? GO:0003723 ... P60492 25132179
    17168 1vy7:DV (2.8) BS04 MG ? GO:0003723 ... P60492 25132179
    17169 1vy7:DW (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    17170 1vy7:DW (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    17171 1vy7:DY (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    17172 1vyk:A (1.49) BS01 ZN ? GO:0005509 ... P12301 15982665
    17173 1vyk:A (1.49) BS02 ZN ? GO:0005509 ... P12301 15982665
    17174 1vyx:A (-1.00) BS01 ZN 2.3.2.36 GO:0008270 ... P90495 15465811
    17175 1vyx:A (-1.00) BS02 ZN 2.3.2.36 GO:0008270 ... P90495 15465811
    17176 1vz0:A (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    17177 1vz0:B (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    17178 1vz0:B (2.3) BS02 CO ? GO:0003677 ... Q72H91 15228524
    17179 1vz0:C (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    17180 1vz0:C (2.3) BS02 CO ? GO:0003677 ... Q72H91 15228524
    17181 1vz0:D (2.3) BS01 CO ? GO:0003677 ... Q72H91 15228524
    17182 1vz0:D (2.3) BS02 CO ? GO:0003677 ... Q72H91 15228524
    17183 1vz0:D (2.3) BS03 CO ? GO:0003677 ... Q72H91 15228524
    17184 1vz4:A (2.5) BS01 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15542595
    17185 1vz4:D (2.5) BS01 FE2 1.14.11.77 GO:0005737 ... Q9WWU5 15542595
    17186 1vzg:A (1.69) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17187 1vzg:A (1.69) BS02 CA 1.15.1.2 GO:0005506 ... Q46495 15341736
    17188 1vzg:A (1.69) BS03 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17189 1vzg:B (1.69) BS01 CA 1.15.1.2 GO:0005506 ... Q46495 15341736
    17190 1vzg:B (1.69) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17191 1vzg:B (1.69) BS04 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17192 1vzh:A (1.69) BS01 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17193 1vzh:A (1.69) BS02 CA 1.15.1.2 GO:0005506 ... Q46495 15341736
    17194 1vzh:A (1.69) BS03 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17195 1vzh:B (1.69) BS01 CA 1.15.1.2 GO:0005506 ... Q46495 15341736
    17196 1vzh:B (1.69) BS02 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17197 1vzh:B (1.69) BS03 FE 1.15.1.2 GO:0005506 ... Q46495 15341736
    17198 1vzi:A (1.15) BS01 CA 1.15.1.2 GO:0005506 ... Q46495 15341736
    17199 1vzi:A (1.15) BS02 CA 1.15.1.2 GO:0005506 ... Q46495 15341736
    17200 1vzi:A (1.15) BS03 FE2 1.15.1.2 GO:0005506 ... Q46495 15341736

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218