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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171401 7z8q:d (4.08) BS01 ZN 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    171402 7z8q:d (4.08) BS02 ZN 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    171403 7z8q:d (4.08) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    171404 7z8r:R (2.7) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171405 7z8r:R (2.7) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171406 7z8r:R (2.7) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171407 7z8t:R (3.0) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171408 7z8t:R (3.0) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171409 7z8t:R (3.0) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171410 7z8v:R (2.7) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171411 7z8v:R (2.7) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171412 7z8v:R (2.7) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171413 7z9f:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P07478 35775010
    171414 7z9f:X (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P07478 35775010
    171415 7zag:C (2.77) BS01 ZN ? N/A G8ZFK7 35694843
    171416 7zag:C (2.77) BS02 ZN ? N/A G8ZFK7 35694843
    171417 7zag:F (2.77) BS02 ZN ? GO:0003723 ... Q9V1V5 35694843
    171418 7zag:P (2.77) BS02 ZN ? GO:0003723 ... P62012 35694843
    171419 7zag:R (2.77) BS02 ZN ? GO:0003735 ... Q9V1U5 35694843
    171420 7zag:W (2.77) BS02 ZN ? GO:0000028 ... Q9UXZ3 35694843
    171421 7zah:7 (2.7) BS05 MG ? GO:0003743 ... Q9UZK7 35694843
    171422 7zah:C (2.7) BS01 ZN ? N/A G8ZFK7 35694843
    171423 7zah:C (2.7) BS02 ZN ? N/A G8ZFK7 35694843
    171424 7zah:F (2.7) BS02 ZN ? GO:0003723 ... Q9V1V5 35694843
    171425 7zah:P (2.7) BS02 ZN ? GO:0003723 ... P62012 35694843
    171426 7zah:R (2.7) BS02 ZN ? GO:0003735 ... Q9V1U5 35694843
    171427 7zah:W (2.7) BS02 ZN ? GO:0000028 ... Q9UXZ3 35694843
    171428 7zai:C (2.6) BS01 ZN ? N/A G8ZFK7 35694843
    171429 7zai:C (2.6) BS02 ZN ? N/A G8ZFK7 35694843
    171430 7zai:F (2.6) BS02 ZN ? GO:0003723 ... Q9V1V5 35694843
    171431 7zai:P (2.6) BS02 ZN ? GO:0003723 ... P62012 35694843
    171432 7zai:R (2.6) BS02 ZN ? GO:0003735 ... Q9V1U5 35694843
    171433 7zai:W (2.6) BS02 ZN ? GO:0000028 ... Q9UXZ3 35694843
    171434 7zak:A (1.62) BS02 MG N/A GO:0006955 ... N/A 37023751
    171435 7zak:B (1.62) BS02 MG N/A GO:0006955 ... N/A 37023751
    171436 7zb2:CCC (1.94) BS01 MG N/A GO:0004252 ... N/A N/A
    171437 7zb2:CCC (1.94) BS02 MG N/A GO:0004252 ... N/A N/A
    171438 7zb2:FFF (1.94) BS01 MG N/A GO:0004252 ... N/A N/A
    171439 7zbh:A (3.3) BS02 ZN 3.4.24.- GO:0004176 ... O51729 N/A
    171440 7zbh:B (3.3) BS02 ZN 3.4.24.- GO:0004176 ... O51729 N/A
    171441 7zbh:D (3.3) BS02 ZN 3.4.24.- GO:0004176 ... O51729 N/A
    171442 7zbh:F (3.3) BS02 ZN 3.4.24.- GO:0004176 ... O51729 N/A
    171443 7zbh:I (3.3) BS02 ZN 3.4.24.- GO:0004176 ... O51729 N/A
    171444 7zbh:K (3.3) BS02 ZN 3.4.24.- GO:0004176 ... O51729 N/A
    171445 7zbp:A (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    171446 7zbp:B (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    171447 7zbp:C (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    171448 7zbp:D (1.45) BS02 MG N/A GO:0004601 ... N/A 35624755
    171449 7zbv:A (1.95) BS01 ZN 3.4.24.3 GO:0004222 ... Q9X721 36154055
    171450 7zbv:A (1.95) BS03 CA 3.4.24.3 GO:0004222 ... Q9X721 36154055
    171451 7zbz:R (3.1) BS01 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171452 7zbz:R (3.1) BS02 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171453 7zbz:R (3.1) BS03 ZN 2.3.2.27
    2.3.2.32
    GO:0000165 ... P62877 37028429
    171454 7zc0:AAA (2.25) BS01 CA N/A GO:0005975 ... N/A 36442227
    171455 7zc3:A (1.9) BS01 ZN ? GO:0005507 ... O00244 36291703
    171456 7zc5:G (3.0) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    171457 7zc6:A (4.27) BS01 FE 7.-.-.- GO:0005886 ... A0A923J0P9 36274063
    171458 7zc6:E (4.27) BS01 FE 7.-.-.- GO:0005886 ... A0A923IZB8 36274063
    171459 7zcc:A (1.848) BS01 MN ? GO:0046872 ... P46327 N/A
    171460 7zcc:B (1.848) BS01 MN ? GO:0046872 ... P46327 N/A
    171461 7zcc:C (1.848) BS01 MN ? GO:0046872 ... P46327 N/A
    171462 7zcc:D (1.848) BS01 MN ? GO:0046872 ... P46327 N/A
    171463 7zci:G (2.69) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    171464 7zcl:A (1.95) BS02 MG N/A GO:0004601 ... N/A 35624755
    171465 7zcl:B (1.95) BS01 MG N/A GO:0004601 ... N/A 35624755
    171466 7zcn:A (1.19) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171467 7zcn:A (1.19) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171468 7zco:A (1.22) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171469 7zco:A (1.22) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171470 7zcp:A (1.29) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171471 7zcp:A (1.29) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171472 7zcq:A (1.35) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171473 7zcq:A (1.35) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171474 7zcr:A (1.45) BS01 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171475 7zcr:A (1.45) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171476 7zcs:A (1.61) BS01 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171477 7zcs:A (1.61) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    171478 7zd2:A (2.16) BS03 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171479 7zd2:A (2.16) BS04 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171480 7zd2:B (2.16) BS04 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171481 7zd2:B (2.16) BS05 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171482 7zd2:C (2.16) BS04 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171483 7zd2:C (2.16) BS05 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171484 7zd2:D (2.16) BS05 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171485 7zd2:D (2.16) BS06 CO 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171486 7zd3:A (1.9) BS03 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171487 7zd3:A (1.9) BS04 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171488 7zd3:A (1.9) BS05 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171489 7zd3:B (1.9) BS03 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171490 7zd3:B (1.9) BS04 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171491 7zd3:B (1.9) BS05 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171492 7zd3:C (1.9) BS05 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171493 7zd3:C (1.9) BS06 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171494 7zd3:C (1.9) BS07 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171495 7zd3:D (1.9) BS04 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171496 7zd3:D (1.9) BS05 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171497 7zd3:D (1.9) BS06 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171498 7zd3:D (1.9) BS07 ZN 3.13.2.1 GO:0004013 ... Q9I685 N/A
    171499 7zd6:b (3.16) BS01 ZN ? GO:0006120 ... A0A6P7EX23 36104567
    171500 7zd7:A (1.9) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171501 7zd7:A (1.9) BS04 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171502 7zd7:C (1.9) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171503 7zd8:A (2.03) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171504 7zd8:A (2.03) BS04 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171505 7zd8:A (2.03) BS05 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171506 7zd8:C (2.03) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171507 7zd9:A (1.89) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171508 7zd9:A (1.89) BS04 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171509 7zd9:C (1.89) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    171510 7zda:C (3.17) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    171511 7zda:D (3.17) BS01 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171512 7zdb:C (3.35) BS02 MG 7.4.2.- GO:0005524 ... P23886 37095238
    171513 7zdc:D (3.13) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171514 7zdd:A (1.625) BS02 ZN 2.3.2.27 N/A Q9UPN9 36098557
    171515 7zdd:A (1.625) BS03 ZN 2.3.2.27 N/A Q9UPN9 36098557
    171516 7zdf:D (2.94) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171517 7zdh:b (3.46) BS01 ZN ? GO:0006120 ... A0A6P7EX23 36104567
    171518 7zdj:b (3.25) BS01 ZN ? GO:0006120 ... A0A6P7EX23 36104567
    171519 7zdk:C (3.01) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    171520 7zdk:D (3.01) BS01 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171521 7zdl:C (3.35) BS02 MG 7.4.2.- GO:0005524 ... P23886 37095238
    171522 7zdl:D (3.35) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171523 7zdm:b (3.44) BS01 ZN ? GO:0005739 ... A0A6P7EX23 36104567
    171524 7zdp:b (3.88) BS01 ZN ? GO:0006120 ... A0A6P7EX23 36104567
    171525 7zdt:C (2.71) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    171526 7zdu:C (2.98) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    171527 7zdu:D (2.98) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171528 7zdw:D (3.35) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171529 7ze5:C (2.94) BS01 MG 7.4.2.- GO:0005524 ... P23886 37095238
    171530 7ze5:D (2.94) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171531 7ze9:AAA (2.646) BS01 CU ? N/A G2QH80 37066045
    171532 7ze9:BBB (2.646) BS01 CU ? N/A G2QH80 37066045
    171533 7ze9:CCC (2.646) BS01 CU ? N/A G2QH80 37066045
    171534 7zeb:b (3.8) BS01 ZN ? GO:0006120 ... A0A6P7EX23 36104567
    171535 7zec:D (3.05) BS02 MG 7.4.2.- GO:0005524 ... P29018 37095238
    171536 7zee:A (1.36) BS01 MG 3.1.3.5
    3.1.3.91
    GO:0000166 ... Q969T7 35631380
    171537 7zeg:A (1.56) BS02 MG 3.1.3.5
    3.1.3.91
    GO:0000166 ... Q969T7 35631380
    171538 7zeg:B (1.56) BS02 MG 3.1.3.5
    3.1.3.91
    GO:0000166 ... Q969T7 35631380
    171539 7zeh:A (1.5) BS03 MG 3.1.3.5
    3.1.3.91
    GO:0000166 ... Q969T7 35631380
    171540 7zeh:B (1.5) BS03 MG 3.1.3.5
    3.1.3.91
    GO:0000166 ... Q969T7 35631380
    171541 7zeh:C (1.5) BS03 MG 3.1.3.5
    3.1.3.91
    GO:0000166 ... Q969T7 35631380
    171542 7zeh:D (1.5) BS03 MG 3.1.3.5
    3.1.3.91
    GO:0000166 ... Q969T7 35631380
    171543 7zel:A (2.8) BS01 ZN 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171544 7zel:A (2.8) BS02 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171545 7zel:B (2.8) BS01 ZN 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171546 7zel:B (2.8) BS02 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171547 7zep:B (3.2) BS01 ZN 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171548 7zes:A (3.1) BS02 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171549 7zes:B (3.1) BS02 ZN 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171550 7zes:B (3.1) BS03 MG 3.1.-.- GO:0000049 ... Q7Z7L1 36115853
    171551 7zey:B (-1.00) BS01 ZN 2.1.1.-
    2.1.1.364
    N/A Q03164 37075125
    171552 7zey:B (-1.00) BS02 ZN 2.1.1.-
    2.1.1.364
    N/A Q03164 37075125
    171553 7zez:B (-1.00) BS02 ZN 2.1.1.-
    2.1.1.364
    N/A Q03164 37075125
    171554 7zez:B (-1.00) BS03 ZN 2.1.1.-
    2.1.1.364
    N/A Q03164 37075125
    171555 7zf2:D (3.86) BS01 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36717560
    171556 7zf2:D (3.86) BS02 ZN 2.7.7.6 GO:0000287 ... P9WGY7 36717560
    171557 7zf2:D (3.86) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 36717560
    171558 7zf7:A (3.46) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35662412
    171559 7zg7:A (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171560 7zg7:A (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171561 7zg7:A (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171562 7zg7:A (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171563 7zg7:B (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171564 7zg7:B (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171565 7zg7:B (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171566 7zg7:B (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171567 7zg7:C (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171568 7zg7:C (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171569 7zg7:C (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171570 7zg7:C (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171571 7zg7:D (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171572 7zg7:D (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171573 7zg7:D (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171574 7zg7:D (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171575 7zg7:E (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171576 7zg7:E (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171577 7zg7:E (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171578 7zg7:E (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171579 7zg7:F (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171580 7zg7:F (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171581 7zg7:F (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171582 7zg7:F (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171583 7zg7:G (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171584 7zg7:G (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171585 7zg7:G (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171586 7zg7:G (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171587 7zg7:H (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171588 7zg7:H (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171589 7zg7:H (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171590 7zg7:H (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171591 7zg7:I (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171592 7zg7:I (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171593 7zg7:I (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171594 7zg7:I (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171595 7zg7:J (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171596 7zg7:J (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171597 7zg7:J (1.77) BS03 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171598 7zg7:J (1.77) BS04 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171599 7zg7:K (1.77) BS01 ZN 1.16.3.1 GO:0004322 ... P02794 36322417
    171600 7zg7:K (1.77) BS02 ZN 1.16.3.1 GO:0004322 ... P02794 36322417

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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