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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    169601 7xma:S (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    169602 7xmb:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    169603 7xmb:A (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    169604 7xmb:F (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    169605 7xmb:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    169606 7xmb:N (2.2) BS04 MG 7.1.1.9 GO:0004129 ... P00396 36481732
    169607 7xmb:S (2.2) BS01 ZN ? GO:0005740 ... P00428 36481732
    169608 7xmc:A (3.09) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    169609 7xmd:A (2.99) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    169610 7xmw:A (2.59) BS01 ZN ? N/A U2Q5N5 35512461
    169611 7xmw:B (2.59) BS01 ZN ? N/A U2Q5N5 35512461
    169612 7xn7:A (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169613 7xn7:A (3.1) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169614 7xn7:A (3.1) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169615 7xn7:B (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    169616 7xn7:C (3.1) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    169617 7xn7:I (3.1) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    169618 7xn7:I (3.1) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    169619 7xn7:J (3.1) BS01 ZN ? GO:0000428 ... C4R009 35981082
    169620 7xn7:L (3.1) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    169621 7xn7:M (3.1) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    169622 7xn7:V (3.1) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    169623 7xnc:A (2.1) BS02 CA 2.7.12.2 GO:0004672 ... Q02750 36622773
    169624 7xnc:A (2.1) BS03 CA 2.7.12.2 GO:0004672 ... Q02750 36622773
    169625 7xnt:A (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    169626 7xnt:B (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    169627 7xnt:C (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    169628 7xnt:G (1.822) BS01 CO N/A GO:0003868 ... N/A N/A
    169629 7xnx:LA (2.7) BS03 MG ? GO:0002181 ... P62917 36259929
    169630 7xnx:LN (2.7) BS03 MG ? GO:0002181 ... P61313 36259929
    169631 7xnx:LR (2.7) BS03 MG ? GO:0002181 ... P84098 36259929
    169632 7xnx:Le (2.7) BS02 MG ? GO:0002181 ... P62910 36259929
    169633 7xnx:Le (2.7) BS03 MG ? GO:0002181 ... P62910 36259929
    169634 7xnx:Lf (2.7) BS02 MG ? GO:0000049 ... P18077 36259929
    169635 7xnx:Lg (2.7) BS02 ZN ? GO:0002181 ... P49207 36259929
    169636 7xnx:Lj (2.7) BS03 ZN ? GO:0002181 ... P61927 36259929
    169637 7xnx:Lm (2.7) BS02 ZN ? GO:0002181 ... P62987 36259929
    169638 7xnx:Lo (2.7) BS03 MG ? GO:0003735 ... J3KQN4 36259929
    169639 7xnx:Lo (2.7) BS04 ZN ? GO:0003735 ... J3KQN4 36259929
    169640 7xnx:Lp (2.7) BS02 ZN ? GO:0002181 ... P61513 36259929
    169641 7xnx:Sa (2.7) BS02 ZN ? GO:0002181 ... P62854 36259929
    169642 7xnx:Sd (2.7) BS02 MG ? GO:0002181 ... P62273 36259929
    169643 7xnx:Sd (2.7) BS03 ZN ? GO:0002181 ... P62273 36259929
    169644 7xnx:Sf (2.7) BS02 ZN N/A GO:0003677 ... N/A 36259929
    169645 7xny:LA (2.5) BS03 MG ? GO:0002181 ... P62917 36259929
    169646 7xny:LA (2.5) BS04 MG ? GO:0002181 ... P62917 36259929
    169647 7xny:LC (2.5) BS03 MG ? GO:0002181 ... P36578 36259929
    169648 7xny:LR (2.5) BS03 MG ? GO:0002181 ... P84098 36259929
    169649 7xny:Le (2.5) BS02 MG ? GO:0002181 ... P62910 36259929
    169650 7xny:Le (2.5) BS03 MG ? GO:0002181 ... P62910 36259929
    169651 7xny:Lf (2.5) BS02 MG ? GO:0000049 ... P18077 36259929
    169652 7xny:Lg (2.5) BS02 MG ? GO:0002181 ... P49207 36259929
    169653 7xny:Lg (2.5) BS03 ZN ? GO:0002181 ... P49207 36259929
    169654 7xny:Lj (2.5) BS03 ZN ? GO:0002181 ... P61927 36259929
    169655 7xny:Lm (2.5) BS02 ZN ? GO:0002181 ... P62987 36259929
    169656 7xny:Lo (2.5) BS02 ZN ? GO:0003735 ... J3KQN4 36259929
    169657 7xny:Lp (2.5) BS02 ZN ? GO:0002181 ... P61513 36259929
    169658 7xny:Sa (2.5) BS02 ZN ? GO:0002181 ... P62854 36259929
    169659 7xny:Sd (2.5) BS02 MG ? GO:0002181 ... P62273 36259929
    169660 7xny:Sd (2.5) BS03 ZN ? GO:0002181 ... P62273 36259929
    169661 7xny:Sf (2.5) BS02 ZN ? GO:0002181 ... P62979 36259929
    169662 7xo4:D (3.24) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q8R0I0 35641567
    169663 7xo4:E (3.24) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q8R0I0 35641567
    169664 7xo7:E (3.38) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    169665 7xo7:F (3.38) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    169666 7xo8:D (3.48) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    169667 7xo8:E (3.48) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    169668 7xo8:F (3.48) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    169669 7xo9:D (3.0) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35641567
    169670 7xp0:A (2.61) BS01 ZN ? GO:0003677 ... Q9I5E1 36475801
    169671 7xp1:A (2.5) BS01 ZN ? GO:0003677 ... Q9I5E1 36475801
    169672 7xps:A (2.1) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169673 7xps:B (2.1) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169674 7xpt:A (2.0) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169675 7xpt:B (2.0) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169676 7xpu:A (2.2) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169677 7xpu:B (2.2) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169678 7xpv:A (2.4) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169679 7xpv:B (2.4) BS02 MN ? GO:0046872 ... G8HX37 36642179
    169680 7xqv:A (2.76) BS02 MG 3.6.5.2 GO:0000902 ... P61589 35665664
    169681 7xqx:A (3.36) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169682 7xqx:C (3.36) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169683 7xqy:A (2.35) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169684 7xqy:C (2.35) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169685 7xqz:A (2.0) BS02 MG ? GO:0003824 ... A0A2P2GK84 36416740
    169686 7xr0:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169687 7xr0:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169688 7xr1:A (2.81) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169689 7xr1:C (2.81) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    169690 7xr7:A (1.63) BS02 MG ? GO:0003824 ... A0A2P2GK84 36416740
    169691 7xr7:A (1.63) BS03 MG ? GO:0003824 ... A0A2P2GK84 36416740
    169692 7xra:A (1.95) BS02 MG ? GO:0003824 ... A0A2P2GK84 36416740
    169693 7xrd:A (3.9) BS01 MG 3.6.5.2 GO:0001726 ... P62330 N/A
    169694 7xrd:D (3.9) BS01 MG 3.6.5.2 GO:0001726 ... P62330 N/A
    169695 7xrf:A (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    169696 7xrf:C (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    169697 7xrf:E (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    169698 7xrf:G (2.137) BS01 MN ? GO:0046872 ... A0A3Q9WXL1 36815035
    169699 7xrg:A (1.9) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    169700 7xrg:A (1.9) BS02 FE 1.16.3.1 GO:0004322 ... T2B7E1 N/A
    169701 7xrk:A (2.3) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    169702 7xrk:D (2.3) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    169703 7xrl:A (1.75) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    169704 7xrl:D (1.75) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 35974426
    169705 7xrt:A (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169706 7xrt:B (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169707 7xrt:C (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169708 7xrt:D (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169709 7xrt:E (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169710 7xrt:F (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169711 7xrt:G (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169712 7xrt:H (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169713 7xrt:I (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169714 7xrt:J (2.007) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169715 7xru:A (2.5) BS02 MG ? GO:0003824 ... A0A2P2GK84 36416740
    169716 7xrv:A (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169717 7xrv:B (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169718 7xrv:D (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169719 7xrv:E (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169720 7xrv:F (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169721 7xrv:G (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169722 7xrv:H (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169723 7xrv:I (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169724 7xrv:J (2.713) BS01 CA ? GO:0016747 ... Q8A0E4 N/A
    169725 7xrx:A (1.882) BS01 CA ? GO:0046872 ... Q9HW32 N/A
    169726 7xrx:B (1.882) BS01 CA ? GO:0046872 ... Q9HW32 N/A
    169727 7xrx:C (1.882) BS01 CA ? GO:0046872 ... Q9HW32 N/A
    169728 7xse:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169729 7xse:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169730 7xse:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169731 7xse:B (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    169732 7xse:C (3.6) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    169733 7xse:I (3.6) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    169734 7xse:I (3.6) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    169735 7xse:J (3.6) BS01 ZN ? GO:0000428 ... C4R009 35981082
    169736 7xse:L (3.6) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    169737 7xse:M (3.6) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    169738 7xse:V (3.6) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    169739 7xso:A (3.01) BS02 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169740 7xso:A (3.01) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169741 7xso:A (3.01) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169742 7xso:A (3.01) BS05 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169743 7xsp:B (2.89) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169744 7xsp:B (2.89) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169745 7xsp:B (2.89) BS05 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169746 7xsq:A (2.88) BS02 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169747 7xsq:A (2.88) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169748 7xsq:A (2.88) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169749 7xsq:A (2.88) BS05 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169750 7xsr:B (2.97) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169751 7xsr:B (2.97) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169752 7xss:B (3.2) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169753 7xss:B (3.2) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169754 7xss:B (3.2) BS05 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169755 7xss:B (3.2) BS06 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169756 7xsx:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169757 7xsx:A (3.8) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169758 7xsx:A (3.8) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169759 7xsx:B (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    169760 7xsx:C (3.8) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    169761 7xsx:I (3.8) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    169762 7xsx:I (3.8) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    169763 7xsx:J (3.8) BS01 ZN ? GO:0000428 ... C4R009 35981082
    169764 7xsx:L (3.8) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    169765 7xsx:M (3.8) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    169766 7xsx:V (3.8) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    169767 7xsz:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169768 7xsz:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169769 7xsz:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169770 7xsz:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    169771 7xsz:C (3.4) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    169772 7xsz:I (3.4) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    169773 7xsz:I (3.4) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    169774 7xsz:J (3.4) BS01 ZN ? GO:0000428 ... C4R009 35981082
    169775 7xsz:L (3.4) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    169776 7xsz:M (3.4) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    169777 7xsz:V (3.4) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    169778 7xt2:A (3.0) BS01 ZN ? GO:0001778 ... Q6ZMU5 36944613
    169779 7xt2:A (3.0) BS02 ZN ? GO:0001778 ... Q6ZMU5 36944613
    169780 7xt2:B (3.0) BS01 ZN ? GO:0001778 ... Q6ZMU5 36944613
    169781 7xt2:B (3.0) BS02 ZN ? GO:0001778 ... Q6ZMU5 36944613
    169782 7xt4:B (3.08) BS03 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169783 7xt4:B (3.08) BS04 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169784 7xt4:B (3.08) BS05 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169785 7xt4:B (3.08) BS06 ZN ? GO:0003723 ... A0A0B0EGF3 36306795
    169786 7xt7:A (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169787 7xt7:A (4.2) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169788 7xt7:A (4.2) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169789 7xt7:B (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082
    169790 7xt7:C (4.2) BS01 ZN ? GO:0000428 ... C4R7L2 35981082
    169791 7xt7:I (4.2) BS01 ZN ? GO:0000428 ... F2QPE6 35981082
    169792 7xt7:I (4.2) BS02 ZN ? GO:0000428 ... F2QPE6 35981082
    169793 7xt7:J (4.2) BS01 ZN ? GO:0000428 ... C4R009 35981082
    169794 7xt7:L (4.2) BS01 ZN ? GO:0001054 ... F2QMI1 35981082
    169795 7xt7:M (4.2) BS01 ZN ? GO:0000993 ... C4QZ45 35981082
    169796 7xt7:V (4.2) BS01 ZN ? GO:0000775 ... C4R0E6 35981082
    169797 7xtd:A (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169798 7xtd:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169799 7xtd:A (3.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 35981082
    169800 7xtd:B (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 35981082

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218