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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    168601 7wir:B (1.5) BS01 CU 1.4.3.21 GO:0005507 ... P46881 36320691
    168602 7wis:A (1.9) BS01 CU 1.4.3.21 GO:0005507 ... P46881 36320691
    168603 7wis:B (1.9) BS02 CU 1.4.3.21 GO:0005507 ... P46881 36320691
    168604 7wiw:A (3.12) BS03 MG 7.2.2.- GO:0005524 ... P9WQJ9 36882106
    168605 7wiw:A (3.12) BS04 MG 7.2.2.- GO:0005524 ... P9WQJ9 36882106
    168606 7wiw:B (3.12) BS02 MG 7.2.2.- GO:0005524 ... P9WQJ7 36882106
    168607 7wix:B (3.53) BS02 MG 7.2.2.- GO:0005524 ... P9WQJ7 36882106
    168608 7wiy:A (3.09) BS01 FE 1.14.16.4 GO:0004497 ... Q8IWU9 36046836
    168609 7wiy:B (3.09) BS01 FE 1.14.16.4 GO:0004497 ... Q8IWU9 36046836
    168610 7wiy:C (3.09) BS01 FE 1.14.16.4 GO:0004497 ... Q8IWU9 36046836
    168611 7wiy:D (3.09) BS01 FE 1.14.16.4 GO:0004497 ... Q8IWU9 36046836
    168612 7wj4:A (3.15) BS06 MG 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    168613 7wj4:B (3.15) BS04 MG 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    168614 7wj4:C (3.15) BS06 MG 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    168615 7wj4:D (3.15) BS04 MG 6.3.4.2 GO:0003883 ... Q9VUL1 34301892
    168616 7wj6:A (2.55) BS01 MG ? GO:0004672 ... D1ABX1 36102578
    168617 7wj6:A (2.55) BS02 MG ? GO:0004672 ... D1ABX1 36102578
    168618 7wj6:A (2.55) BS03 MG ? GO:0004672 ... D1ABX1 36102578
    168619 7wj6:A (2.55) BS04 MG ? GO:0004672 ... D1ABX1 36102578
    168620 7wj6:B (2.55) BS01 MG ? GO:0004672 ... D1ABX1 36102578
    168621 7wj6:B (2.55) BS02 MG ? GO:0004672 ... D1ABX1 36102578
    168622 7wj8:A (1.805) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    168623 7wjh:A (1.698) BS02 MG ? GO:0042981 ... Q64373 35964379
    168624 7wjj:A (1.603) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    168625 7wjk:A (1.704) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    168626 7wjl:A (2.4) BS01 ZN 3.5.1.98 N/A Q02959 35623387
    168627 7wjr:A (2.0) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168628 7wjr:B (2.0) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168629 7wjr:C (2.0) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168630 7wjr:D (2.0) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168631 7wjv:A (1.724) BS02 MG 3.1.3.11 GO:0000122 ... P09467 35786925
    168632 7wjv:B (1.724) BS04 MG 3.1.3.11 GO:0000122 ... P09467 35786925
    168633 7wkl:A (1.88) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168634 7wkl:B (1.88) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168635 7wkl:C (1.88) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168636 7wkl:D (1.88) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168637 7wkm:A (1.8) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168638 7wkm:B (1.8) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168639 7wkv:A (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168640 7wkv:C (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168641 7wkv:E (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168642 7wl0:A (2.5) BS03 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168643 7wl0:C (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168644 7wl0:E (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168645 7wl0:G (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168646 7wl0:I (2.5) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    168647 7wld:K (2.53) BS01 CA 3.-.-.- GO:0003923 ... Q92643 35551457
    168648 7wlj:A (3.9) BS02 CA ? GO:0005216 ... Q9P0X4 35440630
    168649 7wlk:A (3.6) BS02 CA ? GO:0005216 ... Q9P0X4 35440630
    168650 7wm7:A (2.4) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    168651 7wm7:B (2.4) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    168652 7wmb:A (2.2) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168653 7wmb:B (2.2) BS01 MG 4.1.1.46 GO:0005575 ... P80402 N/A
    168654 7wmd:A (2.0) BS01 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    168655 7wmd:A (2.0) BS02 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    168656 7wmd:A (2.0) BS03 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    168657 7wmf:A (2.1) BS02 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    168658 7wmf:B (2.1) BS02 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    168659 7wmi:A (2.0) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    168660 7wmi:B (2.0) BS01 ZN 6.1.1.3 GO:0000166 ... V7II86 35363470
    168661 7wmk:A (1.47) BS02 CA ? GO:0016491 ... A0A6B8QJ68 35613468
    168662 7wn3:A (3.29) BS01 CA ? N/A P04275 35169124
    168663 7wn3:A (3.29) BS02 CA ? N/A P04275 35169124
    168664 7wn3:B (3.29) BS01 CA ? N/A P04275 35169124
    168665 7wn3:B (3.29) BS02 CA ? N/A P04275 35169124
    168666 7wn3:C (3.29) BS01 CA ? N/A P04275 35169124
    168667 7wn3:D (3.29) BS01 CA ? N/A P04275 35169124
    168668 7wn3:E (3.29) BS01 CA ? N/A P04275 35169124
    168669 7wn3:E (3.29) BS02 CA ? N/A P04275 35169124
    168670 7wn3:F (3.29) BS01 CA ? N/A P04275 35169124
    168671 7wn3:G (3.29) BS01 CA ? N/A P04275 35169124
    168672 7wn3:G (3.29) BS02 CA ? N/A P04275 35169124
    168673 7wn3:H (3.29) BS01 CA ? N/A P04275 35169124
    168674 7wn4:E (3.4) BS01 CA ? N/A P04275 35169124
    168675 7wn4:E (3.4) BS02 CA ? N/A P04275 35169124
    168676 7wn4:F (3.4) BS01 CA ? N/A P04275 35169124
    168677 7wn4:G (3.4) BS01 CA ? N/A P04275 35169124
    168678 7wn4:G (3.4) BS02 CA ? N/A P04275 35169124
    168679 7wn4:H (3.4) BS01 CA ? N/A P04275 35169124
    168680 7wn6:A (3.29) BS01 CA ? N/A P04275 35169124
    168681 7wn6:A (3.29) BS02 CA ? N/A P04275 35169124
    168682 7wn6:B (3.29) BS01 CA ? N/A P04275 35169124
    168683 7wn6:B (3.29) BS02 CA ? N/A P04275 35169124
    168684 7wn6:C (3.29) BS01 CA ? N/A P04275 35169124
    168685 7wn6:D (3.29) BS01 CA ? N/A P04275 35169124
    168686 7wn6:E (3.29) BS01 CA ? N/A P04275 35169124
    168687 7wn6:E (3.29) BS02 CA ? N/A P04275 35169124
    168688 7wn6:F (3.29) BS01 CA ? N/A P04275 35169124
    168689 7wn6:G (3.29) BS01 CA ? N/A P04275 35169124
    168690 7wn6:G (3.29) BS02 CA ? N/A P04275 35169124
    168691 7wn6:H (3.29) BS01 CA ? N/A P04275 35169124
    168692 7wn8:A (2.8) BS01 ZN ? GO:0005886 ... Q08722 36650558
    168693 7wn8:A (2.8) BS02 ZN ? GO:0005886 ... Q08722 36650558
    168694 7wn8:L (2.8) BS01 ZN N/A N/A N/A 36650558
    168695 7wnh:A (3.1) BS03 ZN ? GO:0003677 ... P43354 36442107
    168696 7wnh:A (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    168697 7wnh:B (3.1) BS03 ZN ? GO:0003677 ... P43354 36442107
    168698 7wnh:B (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    168699 7wnh:C (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    168700 7wnh:C (3.1) BS05 ZN ? GO:0003677 ... P43354 36442107
    168701 7wnh:D (3.1) BS04 ZN ? GO:0003677 ... P43354 36442107
    168702 7wnh:D (3.1) BS05 ZN ? GO:0003677 ... P43354 36442107
    168703 7wnk:A (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168704 7wnk:B (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168705 7wnk:C (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168706 7wnk:D (1.4) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168707 7wnl:A (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168708 7wnl:B (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168709 7wnl:C (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168710 7wnl:D (1.51) BS01 MN 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    168711 7wnm:B (2.7) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 35013100
    168712 7wno:X (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 35546796
    168713 7wnp:X (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 35546796
    168714 7wnt:A (2.44) BS01 ZN 3.1.-.-
    3.5.2.6    		 GO:0003723 ... P9WGZ9 N/A
    168715 7wnt:A (2.44) BS02 ZN 3.1.-.-
    3.5.2.6    		 GO:0003723 ... P9WGZ9 N/A
    168716 7wnu:A (3.2) BS02 ZN 3.1.-.-
    3.5.2.6    		 GO:0003723 ... P9WGZ9 N/A
    168717 7wnu:A (3.2) BS03 ZN 3.1.-.-
    3.5.2.6    		 GO:0003723 ... P9WGZ9 N/A
    168718 7wnu:B (3.2) BS02 ZN 3.1.-.-
    3.5.2.6    		 GO:0003723 ... P9WGZ9 N/A
    168719 7wnu:B (3.2) BS03 ZN 3.1.-.-
    3.5.2.6    		 GO:0003723 ... P9WGZ9 N/A
    168720 7wpb:D (2.79) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 35133176
    168721 7wpc:D (2.57) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 35133176
    168722 7wpp:E (2.85) BS01 CA ? N/A P04275 35148377
    168723 7wpp:E (2.85) BS02 CA ? N/A P04275 35148377
    168724 7wpp:F (2.85) BS01 CA ? N/A P04275 35148377
    168725 7wpp:G (2.85) BS01 CA ? N/A P04275 35148377
    168726 7wpp:G (2.85) BS02 CA ? N/A P04275 35148377
    168727 7wpp:H (2.85) BS01 CA ? N/A P04275 35148377
    168728 7wpq:A (3.267) BS01 CA ? N/A P04275 35148377
    168729 7wpq:A (3.267) BS02 CA ? N/A P04275 35148377
    168730 7wpq:B (3.267) BS01 CA ? N/A P04275 35148377
    168731 7wpq:B (3.267) BS02 CA ? N/A P04275 35148377
    168732 7wpq:C (3.267) BS01 CA ? N/A P04275 35148377
    168733 7wpq:D (3.267) BS01 CA ? N/A P04275 35148377
    168734 7wpq:E (3.267) BS01 CA ? N/A P04275 35148377
    168735 7wpq:E (3.267) BS02 CA ? N/A P04275 35148377
    168736 7wpq:F (3.267) BS01 CA ? N/A P04275 35148377
    168737 7wpq:G (3.267) BS01 CA ? N/A P04275 35148377
    168738 7wpq:G (3.267) BS02 CA ? N/A P04275 35148377
    168739 7wpq:H (3.267) BS01 CA ? N/A P04275 35148377
    168740 7wpr:A (4.39) BS01 CA ? N/A P04275 35148377
    168741 7wpr:A (4.39) BS02 CA ? N/A P04275 35148377
    168742 7wpr:B (4.39) BS01 CA ? N/A P04275 35148377
    168743 7wpr:B (4.39) BS02 CA ? N/A P04275 35148377
    168744 7wpr:C (4.39) BS01 CA ? N/A P04275 35148377
    168745 7wpr:D (4.39) BS01 CA ? N/A P04275 35148377
    168746 7wpr:E (4.39) BS01 CA ? N/A P04275 35148377
    168747 7wpr:E (4.39) BS02 CA ? N/A P04275 35148377
    168748 7wpr:F (4.39) BS01 CA ? N/A P04275 35148377
    168749 7wpr:F (4.39) BS02 CA ? N/A P04275 35148377
    168750 7wpr:G (4.39) BS01 CA ? N/A P04275 35148377
    168751 7wpr:G (4.39) BS02 CA ? N/A P04275 35148377
    168752 7wpr:H (4.39) BS01 CA ? N/A P04275 35148377
    168753 7wpr:H (4.39) BS02 CA ? N/A P04275 35148377
    168754 7wpr:I (4.39) BS01 CA ? N/A P04275 35148377
    168755 7wpr:I (4.39) BS02 CA ? N/A P04275 35148377
    168756 7wpr:J (4.39) BS01 CA ? N/A P04275 35148377
    168757 7wpr:J (4.39) BS02 CA ? N/A P04275 35148377
    168758 7wpr:K (4.39) BS01 CA ? N/A P04275 35148377
    168759 7wpr:K (4.39) BS02 CA ? N/A P04275 35148377
    168760 7wpr:L (4.39) BS01 CA ? N/A P04275 35148377
    168761 7wpr:L (4.39) BS02 CA ? N/A P04275 35148377
    168762 7wpr:M (4.39) BS01 CA ? N/A P04275 35148377
    168763 7wpr:M (4.39) BS02 CA ? N/A P04275 35148377
    168764 7wpr:N (4.39) BS01 CA ? N/A P04275 35148377
    168765 7wpr:N (4.39) BS02 CA ? N/A P04275 35148377
    168766 7wpr:O (4.39) BS01 CA ? N/A P04275 35148377
    168767 7wpr:O (4.39) BS02 CA ? N/A P04275 35148377
    168768 7wpr:P (4.39) BS01 CA ? N/A P04275 35148377
    168769 7wpr:P (4.39) BS02 CA ? N/A P04275 35148377
    168770 7wpr:Q (4.39) BS01 CA ? N/A P04275 35148377
    168771 7wpr:Q (4.39) BS02 CA ? N/A P04275 35148377
    168772 7wpr:R (4.39) BS01 CA ? N/A P04275 35148377
    168773 7wpr:R (4.39) BS02 CA ? N/A P04275 35148377
    168774 7wpr:S (4.39) BS01 CA ? N/A P04275 35148377
    168775 7wpr:T (4.39) BS01 CA ? N/A P04275 35148377
    168776 7wpr:U (4.39) BS01 CA ? N/A P04275 35148377
    168777 7wpr:V (4.39) BS01 CA ? N/A P04275 35148377
    168778 7wpr:W (4.39) BS01 CA ? N/A P04275 35148377
    168779 7wpr:X (4.39) BS01 CA ? N/A P04275 35148377
    168780 7wpr:Y (4.39) BS01 CA ? N/A P04275 35148377
    168781 7wpr:Z (4.39) BS01 CA ? N/A P04275 35148377
    168782 7wpr:a (4.39) BS01 CA ? N/A P04275 35148377
    168783 7wpr:b (4.39) BS01 CA ? N/A P04275 35148377
    168784 7wpr:c (4.39) BS01 CA ? N/A P04275 35148377
    168785 7wpr:d (4.39) BS01 CA ? N/A P04275 35148377
    168786 7wpr:e (4.39) BS01 CA ? N/A P04275 35148377
    168787 7wpr:f (4.39) BS01 CA ? N/A P04275 35148377
    168788 7wps:A (4.32) BS01 CA ? N/A P04275 35148377
    168789 7wps:A (4.32) BS02 CA ? N/A P04275 35148377
    168790 7wps:B (4.32) BS01 CA ? N/A P04275 35148377
    168791 7wps:B (4.32) BS02 CA ? N/A P04275 35148377
    168792 7wps:C (4.32) BS01 CA ? N/A P04275 35148377
    168793 7wps:D (4.32) BS01 CA ? N/A P04275 35148377
    168794 7wps:E (4.32) BS01 CA ? N/A P04275 35148377
    168795 7wps:E (4.32) BS02 CA ? N/A P04275 35148377
    168796 7wps:F (4.32) BS01 CA ? N/A P04275 35148377
    168797 7wps:G (4.32) BS01 CA ? N/A P04275 35148377
    168798 7wps:G (4.32) BS02 CA ? N/A P04275 35148377
    168799 7wps:H (4.32) BS01 CA ? N/A P04275 35148377
    168800 7wps:I (4.32) BS01 CA ? N/A P04275 35148377
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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