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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    168001 7vvs:C (2.2) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168002 7vvs:D (2.2) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168003 7vvs:D (2.2) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168004 7vvs:E (2.2) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168005 7vvs:E (2.2) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168006 7vvs:F (2.2) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168007 7vvs:F (2.2) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168008 7vvs:G (2.2) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168009 7vvs:G (2.2) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168010 7vvs:H (2.2) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168011 7vvs:H (2.2) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    168012 7vw1:A (2.494) BS01 CU1 ? GO:0046872 ... V5J1S8 35066349
    168013 7vw1:B (2.494) BS01 CU1 ? GO:0046872 ... V5J1S8 35066349
    168014 7vw1:B (2.494) BS02 CU1 ? GO:0046872 ... V5J1S8 35066349
    168015 7vw2:B (2.186) BS01 CU ? GO:0046872 ... V5J1S8 35066349
    168016 7vw3:A (3.8) BS04 MG 3.1.-.- GO:0003676 ... J7RUA5 36674715
    168017 7vw7:B (3.818) BS02 MG 7.1.2.2 GO:0005524 ... A0A1V8WY35 35912346
    168018 7vwj:M (2.6) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168019 7vwj:T (2.6) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168020 7vws:A (1.71) BS01 MG N/A GO:0009058 ... N/A 35235232
    168021 7vws:A (1.71) BS02 MG N/A GO:0009058 ... N/A 35235232
    168022 7vws:B (1.71) BS01 MG N/A GO:0009058 ... N/A 35235232
    168023 7vws:B (1.71) BS02 MG N/A GO:0009058 ... N/A 35235232
    168024 7vwy:D (4.57) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35641097
    168025 7vwy:D (4.57) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35641097
    168026 7vwy:D (4.57) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 35641097
    168027 7vwz:D (4.0) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35641097
    168028 7vwz:D (4.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 35641097
    168029 7vx0:A (2.0) BS02 FE ? GO:0003824 ... Q84G19 36329057
    168030 7vx0:B (2.0) BS02 FE ? GO:0003824 ... Q84G19 36329057
    168031 7vx4:A (3.9) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 34930910
    168032 7vx5:A (3.8) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 34930910
    168033 7vx8:A (2.8) BS03 MG 3.1.2.-
    7.6.2.-
    GO:0000038 ... O45730
    P33897
    35676282
    168034 7vx8:B (2.8) BS02 MG 3.1.2.-
    7.6.2.-
    GO:0000038 ... O45730
    P33897
    35676282
    168035 7vxp:M (2.7) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168036 7vxp:T (2.7) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168037 7vxq:A (1.77) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    168038 7vxq:C (1.77) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    168039 7vxu:M (2.8) BS04 MG ? GO:0005739 ... A0A8D1AAL8 35145322
    168040 7vxu:T (2.8) BS01 ZN ? GO:0005739 ... F1S031 35145322
    168041 7vy2:L (2.75) BS08 FE N/A GO:0009772 ... N/A 35393413
    168042 7vy2:M (2.75) BS07 FE N/A GO:0009772 ... N/A 35393413
    168043 7vy2:l (2.75) BS08 FE N/A GO:0009772 ... N/A 35393413
    168044 7vy2:m (2.75) BS07 FE N/A GO:0009772 ... N/A 35393413
    168045 7vy3:L (2.63) BS08 FE N/A GO:0009772 ... N/A 35393413
    168046 7vy3:M (2.63) BS08 FE N/A GO:0009772 ... N/A 35393413
    168047 7vy8:M (2.6) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168048 7vy8:T (2.6) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168049 7vya:M (2.8) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168050 7vya:T (2.8) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168051 7vyf:M (2.8) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168052 7vyf:T (2.8) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168053 7vyh:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168054 7vyh:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168055 7vyj:A (1.98) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168056 7vyj:B (1.98) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168057 7vyn:M (2.4) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168058 7vyn:T (2.4) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168059 7vyo:A (2.25) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168060 7vyo:B (2.25) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168061 7vyp:A (2.88) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168062 7vyp:B (2.88) BS03 FE ? GO:0003824 ... Q84G19 36329057
    168063 7vyx:A (3.2) BS04 ZN N/A N/A N/A N/A
    168064 7vyx:B (3.2) BS04 ZN N/A N/A N/A N/A
    168065 7vz1:M (2.5) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168066 7vz1:T (2.5) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168067 7vzg:A (2.61) BS15 CA ? GO:0009579 ... G2LDR8 36517472
    168068 7vzg:a (2.61) BS19 CA ? GO:0009579 ... G2LDR8 36517472
    168069 7vzn:A (2.1) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168070 7vzn:B (2.1) BS02 FE ? GO:0003824 ... Q84G19 36329057
    168071 7vzq:A (2.1) BS02 FE ? GO:0003824 ... Q84G19 36329057
    168072 7vzq:B (2.1) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168073 7vzr:A (2.22) BS15 CA ? GO:0009579 ... G2LDR8 N/A
    168074 7vzr:a (2.22) BS19 CA ? GO:0009579 ... G2LDR8 N/A
    168075 7vzu:A (2.3) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168076 7vzu:B (2.3) BS01 FE ? GO:0003824 ... Q84G19 36329057
    168077 7vzv:T (3.2) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168078 7vzw:M (3.2) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168079 7vzw:T (3.2) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168080 7vzy:A (2.81) BS02 FE ? GO:0003824 ... Q84G19 36329057
    168081 7vzy:B (2.81) BS03 FE ? GO:0003824 ... Q84G19 36329057
    168082 7vzz:A (2.85) BS02 FE ? GO:0003824 ... Q84G19 36329057
    168083 7vzz:B (2.85) BS02 FE ? GO:0003824 ... Q84G19 36329057
    168084 7w00:T (3.5) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168085 7w02:A (3.3) BS03 MG 7.6.2.1
    7.6.2.2
    GO:0005319 ... Q99758 35394827
    168086 7w02:A (3.3) BS04 MG 7.6.2.1
    7.6.2.2
    GO:0005319 ... Q99758 35394827
    168087 7w0d:F (4.18) BS04 MG 3.1.26.3 GO:0002230 ... A1ZAW0 35768513
    168088 7w0e:A (4.03) BS04 MG 3.1.26.3 GO:0002230 ... A1ZAW0 35768513
    168089 7w0h:M (3.4) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168090 7w0h:T (3.4) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168091 7w0r:M (2.8) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168092 7w0r:T (2.8) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168093 7w0y:M (3.4) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168094 7w0y:T (3.4) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168095 7w15:A (1.77) BS03 MG ? GO:0005525 ... A5Y459 N/A
    168096 7w15:A (1.77) BS04 MG ? GO:0005525 ... A5Y459 N/A
    168097 7w15:B (1.77) BS03 MG ? GO:0005525 ... A5Y459 N/A
    168098 7w19:A (1.9) BS01 CA ? GO:0005525 ... A5Y459 N/A
    168099 7w19:A (1.9) BS02 CA ? GO:0005525 ... A5Y459 N/A
    168100 7w19:A (1.9) BS03 MG ? GO:0005525 ... A5Y459 N/A
    168101 7w19:B (1.9) BS01 CA ? GO:0005525 ... A5Y459 N/A
    168102 7w1m:H (6.5) BS03 ZN ? GO:0000122 ... P49711 37536339
    168103 7w1m:H (6.5) BS04 ZN ? GO:0000122 ... P49711 37536339
    168104 7w1m:H (6.5) BS05 ZN ? GO:0000122 ... P49711 37536339
    168105 7w1m:H (6.5) BS06 ZN ? GO:0000122 ... P49711 37536339
    168106 7w1m:H (6.5) BS07 ZN ? GO:0000122 ... P49711 37536339
    168107 7w1m:H (6.5) BS08 ZN ? GO:0000122 ... P49711 37536339
    168108 7w1m:H (6.5) BS09 ZN ? GO:0000122 ... P49711 37536339
    168109 7w1m:H (6.5) BS10 ZN ? GO:0000122 ... P49711 37536339
    168110 7w1m:H (6.5) BS11 ZN ? GO:0000122 ... P49711 37536339
    168111 7w1m:H (6.5) BS12 ZN ? GO:0000122 ... P49711 37536339
    168112 7w1m:H (6.5) BS13 ZN ? GO:0000122 ... P49711 37536339
    168113 7w1o:M (3.5) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168114 7w1o:T (3.5) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168115 7w1p:M (3.1) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168116 7w1p:T (3.1) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168117 7w1q:A (2.3) BS01 ZN 3.5.4.15 GO:0003824 ... Q94BU8 36499303
    168118 7w1q:D (2.3) BS01 ZN 3.5.4.15 GO:0003824 ... Q94BU8 36499303
    168119 7w1t:M (3.0) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168120 7w1t:T (3.0) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168121 7w1u:M (3.2) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168122 7w1u:T (3.2) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168123 7w1v:M (3.0) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168124 7w1v:T (3.0) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168125 7w1y:2 (2.59) BS02 ZN 3.6.4.12 GO:0000727 ... P49736 36608662
    168126 7w1y:4 (2.59) BS03 ZN 3.6.4.12 GO:0000727 ... P33991 36608662
    168127 7w1y:5 (2.59) BS03 ZN 3.6.4.12 GO:0000727 ... P33992 36608662
    168128 7w1y:6 (2.59) BS03 ZN 3.6.4.12 GO:0000727 ... Q14566 36608662
    168129 7w1y:7 (2.59) BS03 ZN 3.6.4.12 GO:0000727 ... P33993 36608662
    168130 7w1y:A (2.59) BS02 ZN 3.6.4.12 GO:0000727 ... P49736 36608662
    168131 7w1y:C (2.59) BS03 ZN 3.6.4.12 GO:0000727 ... P33991 36608662
    168132 7w1y:D (2.59) BS03 ZN 3.6.4.12 GO:0000727 ... P33992 36608662
    168133 7w1y:E (2.59) BS02 ZN 3.6.4.12 GO:0000727 ... Q14566 36608662
    168134 7w1y:F (2.59) BS03 ZN 3.6.4.12 GO:0000727 ... P33993 36608662
    168135 7w1z:M (2.6) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168136 7w1z:T (2.6) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168137 7w20:M (3.0) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168138 7w20:T (3.0) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168139 7w2a:A (1.6) BS01 CA N/A GO:0004252 ... N/A 36209912
    168140 7w2a:A (1.6) BS02 CA N/A GO:0004252 ... N/A 36209912
    168141 7w2a:A (1.6) BS03 CA N/A GO:0004252 ... N/A 36209912
    168142 7w2a:B (1.6) BS01 CA N/A GO:0004252 ... N/A 36209912
    168143 7w2a:B (1.6) BS02 CA N/A GO:0004252 ... N/A 36209912
    168144 7w2a:B (1.6) BS03 CA N/A GO:0004252 ... N/A 36209912
    168145 7w2a:B (1.6) BS04 CA N/A GO:0004252 ... N/A 36209912
    168146 7w2i:A (1.8) BS01 MG 3.2.2.n1 GO:0005829 ... O05306 35158209
    168147 7w2i:B (1.8) BS01 MG 3.2.2.n1 GO:0005829 ... O05306 35158209
    168148 7w2i:C (1.8) BS01 MG 3.2.2.n1 GO:0005829 ... O05306 35158209
    168149 7w2i:D (1.8) BS01 MG 3.2.2.n1 GO:0005829 ... O05306 35158209
    168150 7w2k:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168151 7w2k:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168152 7w2l:M (3.0) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168153 7w2l:T (3.0) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168154 7w2r:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168155 7w2r:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168156 7w2s:A (1.85) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    168157 7w2t:A (2.15) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    168158 7w2t:B (2.15) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    168159 7w2u:M (2.6) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168160 7w2u:T (2.6) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168161 7w2v:A (1.8) BS02 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    168162 7w2w:A (1.79) BS03 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    168163 7w2x:A (1.8) BS01 CA 3.2.1.45 GO:0004348 ... F6BL85 N/A
    168164 7w2y:M (2.7) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168165 7w2y:T (2.7) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168166 7w31:M (3.1) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168167 7w31:T (3.1) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168168 7w32:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168169 7w32:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168170 7w35:M (3.0) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    168171 7w35:T (3.0) BS01 ZN ? GO:0006120 ... F1S031 35145322
    168172 7w37:c (3.0) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168173 7w38:c (3.1) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168174 7w39:c (3.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168175 7w3a:c (3.5) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168176 7w3b:c (3.6) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168177 7w3c:c (3.4) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168178 7w3e:A (1.45) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    168179 7w3e:A (1.45) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37742916
    168180 7w3e:F (1.45) BS01 ZN ? GO:0005740 ... P00428 37742916
    168181 7w3e:N (1.45) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    168182 7w3e:N (1.45) BS04 MG 7.1.1.9 GO:0004129 ... P00396 37742916
    168183 7w3e:S (1.45) BS01 ZN ? GO:0005740 ... P00428 37742916
    168184 7w3f:c (3.3) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168185 7w3g:c (3.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168186 7w3h:c (3.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168187 7w3i:c (3.5) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168188 7w3j:c (3.5) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168189 7w3k:c (3.6) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168190 7w3m:c (3.5) BS01 ZN 3.4.19.- GO:0000502 ... O00487 35477760
    168191 7w3r:A (1.92) BS01 ZN 3.4.19.12 GO:0004843 ... Q70CQ2 35588869
    168192 7w3u:A (3.13) BS01 ZN 3.4.19.12 GO:0004843 ... Q70CQ2 35588869
    168193 7w3u:B (3.13) BS01 ZN 3.4.19.12 GO:0004843 ... Q70CQ2 35588869
    168194 7w3u:C (3.13) BS01 ZN 3.4.19.12 GO:0004843 ... Q70CQ2 35588869
    168195 7w45:A (1.94) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 N/A
    168196 7w45:A (1.94) BS02 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 N/A
    168197 7w45:B (1.94) BS01 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 N/A
    168198 7w45:B (1.94) BS02 CA 3.1.1.101
    3.1.1.74
    GO:0005576 ... G9BY57 N/A
    168199 7w47:A (3.0) BS01 MG 7.2.2.19 GO:0000166 ... P19156 35604136
    168200 7w48:A (3.5) BS01 MG 7.2.2.19 GO:0000166 ... P19156 35604136

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218