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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167601 7vms:B (3.8) BS02 CA ? GO:0001666 ... E9Q401 N/A
    167602 7vms:C (3.8) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    167603 7vms:C (3.8) BS02 CA ? GO:0001666 ... E9Q401 N/A
    167604 7vms:D (3.8) BS01 CA ? GO:0001666 ... E9Q401 N/A
    167605 7vms:D (3.8) BS02 ZN ? GO:0001666 ... E9Q401 N/A
    167606 7vmx:A (2.8) BS01 ZN ? GO:0003746 ... P9WNM1 36192483
    167607 7vmx:B (2.8) BS01 MG ? GO:0001666 ... P9WNN1 36192483
    167608 7vmx:B (2.8) BS02 ZN ? GO:0001666 ... P9WNN1 36192483
    167609 7vn0:A (1.4) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    167610 7vn0:B (1.4) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    167611 7vn0:B (1.4) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    167612 7vn0:B (1.4) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    167613 7vn0:C (1.4) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    167614 7vn0:D (1.4) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    167615 7vnj:A (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167616 7vnj:A (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167617 7vnj:A (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167618 7vnj:B (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167619 7vnj:B (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167620 7vnj:B (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167621 7vnj:C (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167622 7vnj:C (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167623 7vnj:C (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167624 7vnj:D (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167625 7vnj:D (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167626 7vnj:D (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167627 7vnj:E (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167628 7vnj:E (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167629 7vnj:E (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167630 7vnj:F (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167631 7vnj:F (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167632 7vnj:F (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167633 7vnj:G (2.56) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167634 7vnj:G (2.56) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167635 7vnj:G (2.56) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167636 7vnm:L (2.86) BS07 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167637 7vnm:M (2.86) BS05 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167638 7vnn:A (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167639 7vnn:A (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167640 7vnn:A (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167641 7vnn:B (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167642 7vnn:B (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167643 7vnn:B (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167644 7vnn:C (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167645 7vnn:C (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167646 7vnn:C (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167647 7vnn:D (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167648 7vnn:D (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167649 7vnn:D (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167650 7vnn:E (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167651 7vnn:E (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167652 7vnn:E (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167653 7vnn:F (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167654 7vnn:F (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167655 7vnn:F (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167656 7vnn:G (2.64) BS01 CA ? GO:0005576 ... A8DS70 36253419
    167657 7vnn:G (2.64) BS02 CA ? GO:0005576 ... A8DS70 36253419
    167658 7vnn:G (2.64) BS03 CA ? GO:0005576 ... A8DS70 36253419
    167659 7vny:L (2.79) BS07 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167660 7vny:M (2.79) BS04 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167661 7vo0:G (3.4) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167662 7vo0:G (3.4) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167663 7vo0:G (3.4) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167664 7vo0:H (3.4) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167665 7vo0:H (3.4) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167666 7vo0:H (3.4) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167667 7vo0:K (3.4) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167668 7vo0:K (3.4) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167669 7vo0:K (3.4) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167670 7vo0:L (3.4) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167671 7vo0:L (3.4) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167672 7vo0:L (3.4) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167673 7vo0:M (3.4) BS02 ZN ? GO:0000976 ... Q9L2H5 35871291
    167674 7vo0:M (3.4) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167675 7vo0:M (3.4) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167676 7vo0:N (3.4) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167677 7vo0:N (3.4) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167678 7vo7:A (2.25) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35927030
    167679 7vo7:B (2.25) BS01 CA 3.4.21.4 GO:0004175 ... P00760 35927030
    167680 7vo8:A (1.75) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    167681 7vo9:G (3.8) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167682 7vo9:G (3.8) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167683 7vo9:G (3.8) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167684 7vo9:H (3.8) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167685 7vo9:H (3.8) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167686 7vo9:H (3.8) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167687 7vo9:M (3.8) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167688 7vo9:M (3.8) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167689 7vo9:M (3.8) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167690 7vo9:N (3.8) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167691 7vo9:N (3.8) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167692 7vo9:N (3.8) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167693 7vod:A (3.3) BS01 MG ? GO:0004930 ... P0ABE7
    P28223    		 34887590
    167694 7voe:A (2.9) BS04 MG ? GO:0004930 ... P0ABE7
    P28223    		 34887590
    167695 7voj:A (3.0) BS01 AL ? GO:0005886 ... Q9SJE9 34799726
    167696 7voj:B (3.0) BS01 AL ? GO:0005886 ... Q9SJE9 34799726
    167697 7vok:B (3.4) BS02 MG ? GO:0001666 ... P9WNN1 36192483
    167698 7vok:D (3.4) BS02 MG ? GO:0001666 ... P9WNN1 36192483
    167699 7vor:L (2.74) BS06 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167700 7vor:M (2.74) BS04 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167701 7vor:l (2.74) BS06 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167702 7vor:m (2.74) BS04 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167703 7vot:L (2.9) BS07 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167704 7vot:M (2.9) BS05 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167705 7vot:l (2.9) BS07 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167706 7vot:m (2.9) BS05 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167707 7vox:A (2.1) BS03 MG ? GO:0003700 ... P55317 35920317
    167708 7vox:B (2.1) BS02 MG ? GO:0003700 ... P55317 35920317
    167709 7vox:C (2.1) BS04 MG ? GO:0003700 ... P55317 35920317
    167710 7vox:H (2.1) BS03 MG ? GO:0003700 ... P55317 35920317
    167711 7voy:M (4.2) BS02 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167712 7vp8:A (2.002) BS01 FE N/A GO:0008199 ... N/A N/A
    167713 7vp8:A (2.002) BS02 FE N/A GO:0008199 ... N/A N/A
    167714 7vp9:C (2.552) BS02 MG 3.4.21.92 GO:0004176 ... Q16740 35905743
    167715 7vp9:G (2.552) BS03 MG 3.4.21.92 GO:0004176 ... Q16740 35905743
    167716 7vp9:J (2.552) BS02 MG 3.4.21.92 GO:0004176 ... Q16740 35905743
    167717 7vpd:D (3.77) BS03 MG 2.7.7.6 GO:0000287 ... Q8CJT1 35871291
    167718 7vpd:D (3.77) BS04 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 35871291
    167719 7vpd:D (3.77) BS05 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 35871291
    167720 7vpd:M (3.77) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167721 7vpd:M (3.77) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167722 7vpd:M (3.77) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167723 7vpd:N (3.77) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167724 7vpd:N (3.77) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167725 7vpe:A (1.62) BS02 ZN 3.4.24.- GO:0004222 ... Q76NL8 N/A
    167726 7vpf:A (2.983) BS01 CA ? GO:0016853 ... A0A1R1C9D1 34784551
    167727 7vpf:A (2.983) BS02 ZN ? GO:0016853 ... A0A1R1C9D1 34784551
    167728 7vpf:B (2.983) BS01 ZN ? GO:0016853 ... A0A1R1C9D1 34784551
    167729 7vpf:B (2.983) BS02 CA ? GO:0016853 ... A0A1R1C9D1 34784551
    167730 7vpi:A (3.6) BS02 MG 7.6.2.- GO:0000166 ... Q9NQ11 34798056
    167731 7vpk:A (3.92) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 34798056
    167732 7vpl:A (3.78) BS01 MG 7.6.2.- GO:0000166 ... Q9NQ11 34798056
    167733 7vpn:A (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    167734 7vpn:B (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    167735 7vpn:C (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    167736 7vpn:D (2.6) BS01 MN ? GO:0046872 ... A8P1J0 35654845
    167737 7vpp:A (2.69) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 35304871
    167738 7vpp:C (2.69) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 35304871
    167739 7vpq:A (3.1) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 35304871
    167740 7vpq:C (3.1) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 35304871
    167741 7vpq:E (3.1) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 35304871
    167742 7vpx:6 (3.0) BS01 ZN ? GO:0000398 ... Q7RTV0 38196034
    167743 7vpx:6 (3.0) BS02 ZN ? GO:0000398 ... Q7RTV0 38196034
    167744 7vpx:6 (3.0) BS03 ZN ? GO:0000398 ... Q7RTV0 38196034
    167745 7vpx:B (3.0) BS02 ZN ? GO:0000245 ... Q15428 38196034
    167746 7vpx:C (3.0) BS02 ZN ? GO:0000375 ... Q12874 38196034
    167747 7vpx:N (3.0) BS03 ZN ? GO:0000243 ... P09234 38196034
    167748 7vpz:D (4.14) BS04 MG 2.7.7.6 GO:0000287 ... Q8CJT1 35871291
    167749 7vpz:D (4.14) BS05 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 35871291
    167750 7vpz:D (4.14) BS06 ZN 2.7.7.6 GO:0000287 ... Q8CJT1 35871291
    167751 7vpz:M (4.14) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167752 7vpz:M (4.14) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167753 7vpz:M (4.14) BS05 ZN ? GO:0000976 ... Q9L2H5 35871291
    167754 7vpz:N (4.14) BS03 ZN ? GO:0000976 ... Q9L2H5 35871291
    167755 7vpz:N (4.14) BS04 ZN ? GO:0000976 ... Q9L2H5 35871291
    167756 7vqf:A (2.3) BS02 ZN ? N/A Q43965 35988639
    167757 7vqj:A (2.45) BS01 ZN 3.5.2.6 GO:0016787 ... A0A0A7Y424 N/A
    167758 7vqj:A (2.45) BS02 ZN 3.5.2.6 GO:0016787 ... A0A0A7Y424 N/A
    167759 7vqj:B (2.45) BS01 ZN 3.5.2.6 GO:0016787 ... A0A0A7Y424 N/A
    167760 7vqj:B (2.45) BS02 ZN 3.5.2.6 GO:0016787 ... A0A0A7Y424 N/A
    167761 7vqo:A (2.19) BS01 ZN 3.2.1.24 GO:0000329 ... G0SE85
    G0SGP6
    P0AEX9    		 N/A
    167762 7vqo:B (2.19) BS01 ZN 3.2.1.24 GO:0000329 ... G0SE85
    G0SGP6
    P0AEX9    		 N/A
    167763 7vqo:C (2.19) BS01 ZN 3.2.1.24 GO:0000329 ... G0SE85
    G0SGP6
    P0AEX9    		 N/A
    167764 7vqo:D (2.19) BS01 ZN 3.2.1.24 GO:0000329 ... G0SE85
    G0SGP6
    P0AEX9    		 N/A
    167765 7vrd:A (1.7) BS01 MG 4.2.1.11 GO:0000015 ... P30575 35900099
    167766 7vrd:B (1.7) BS01 MG 4.2.1.11 GO:0000015 ... P30575 35900099
    167767 7vrd:C (1.7) BS01 MG 4.2.1.11 GO:0000015 ... P30575 35900099
    167768 7vrd:D (1.7) BS01 MG 4.2.1.11 GO:0000015 ... P30575 35900099
    167769 7vrj:D (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    167770 7vrj:F (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    167771 7vrj:L (2.81) BS08 FE N/A GO:0009772 ... N/A 35460693
    167772 7vrj:M (2.81) BS04 FE N/A GO:0009772 ... N/A 35460693
    167773 7vrj:S (2.81) BS04 CA N/A GO:0016020 ... N/A 35460693
    167774 7vrj:U (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    167775 7vrj:W (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    167776 7vrj:Y (2.81) BS03 CA N/A GO:0016020 ... N/A 35460693
    167777 7vsa:A (1.76) BS01 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167778 7vsa:A (1.76) BS02 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167779 7vsa:B (1.76) BS01 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167780 7vsa:B (1.76) BS02 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167781 7vsb:A (1.84) BS01 ZN 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167782 7vsc:A (1.83) BS01 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167783 7vsc:A (1.83) BS02 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167784 7vsd:A (1.7) BS01 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167785 7vsd:A (1.7) BS02 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167786 7vsd:B (1.7) BS01 MG 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167787 7vse:A (2.08) BS01 ZN 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167788 7vse:B (2.08) BS01 ZN 3.1.26.4 GO:0000287 ... P0A7Y4 35234152
    167789 7vsl:A (2.50007) BS01 ZN 3.1.4.53 GO:0004114 ... O60658 N/A
    167790 7vsp:A (2.1) BS01 ZN ? GO:0008270 ... Q96502 35023269
    167791 7vsp:A (2.1) BS02 ZN ? GO:0008270 ... Q96502 35023269
    167792 7vsp:A (2.1) BS03 ZN ? GO:0008270 ... Q96502 35023269
    167793 7vsp:A (2.1) BS04 ZN ? GO:0008270 ... Q96502 35023269
    167794 7vsp:B (2.1) BS01 ZN ? GO:0008270 ... Q96502 35023269
    167795 7vsp:B (2.1) BS02 ZN ? GO:0008270 ... Q96502 35023269
    167796 7vsp:B (2.1) BS03 ZN ? GO:0008270 ... Q96502 35023269
    167797 7vsp:B (2.1) BS04 ZN ? GO:0008270 ... Q96502 35023269
    167798 7vsp:C (2.1) BS01 ZN ? GO:0008270 ... Q96502 35023269
    167799 7vsp:C (2.1) BS02 ZN ? GO:0008270 ... Q96502 35023269
    167800 7vsp:C (2.1) BS03 ZN ? GO:0008270 ... Q96502 35023269
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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