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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166801 7utl:I (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166802 7utl:J (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166803 7utl:K (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166804 7utl:L (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166805 7utl:M (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166806 7utl:N (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166807 7utl:O (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166808 7utl:P (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166809 7utl:Q (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166810 7utl:R (6.6) BS02 MG 3.6.4.- GO:0000287 ... P68135 32521240
    166811 7utt:A (2.04) BS06 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166812 7utt:A (2.04) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    166813 7utt:A (2.04) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    166814 7utt:C (2.04) BS06 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166815 7utt:C (2.04) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    166816 7utt:C (2.04) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    166817 7utw:A (1.33) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    166818 7utw:B (1.33) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    166819 7uu3:A (3.099) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166820 7uu3:A (3.099) BS03 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166821 7uu3:B (3.099) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166822 7uu3:B (3.099) BS03 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166823 7uu4:A (2.1) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166824 7uu4:A (2.1) BS03 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166825 7uu5:A (2.9) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166826 7uu5:A (2.9) BS03 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166827 7uu5:B (2.9) BS02 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166828 7uu5:B (2.9) BS03 ZN 3.5.4.-
    3.5.4.38
    GO:0000932 ... M1GSK9 36470880
    166829 7uuh:A (2.89) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    166830 7uuh:A (2.89) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    166831 7uui:m (2.9) BS01 MG ? GO:0000055 ... P53742 36864048
    166832 7uur:C (1.67) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166833 7uur:F (1.67) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166834 7uus:A (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166835 7uus:C (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166836 7uus:E (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166837 7uus:G (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166838 7uus:I (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166839 7uus:K (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166840 7uus:M (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166841 7uus:O (8.0) BS02 MG 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    166842 7uut:A (1.89) BS01 ZN 1.1.1.2 GO:0000166 ... P77990 35357038
    166843 7uut:B (1.89) BS01 ZN 1.1.1.2 GO:0000166 ... P77990 35357038
    166844 7uut:C (1.89) BS01 ZN 1.1.1.2 GO:0000166 ... P77990 35357038
    166845 7uut:D (1.89) BS01 ZN 1.1.1.2 GO:0000166 ... P77990 35357038
    166846 7uux:A (2.26) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166847 7uux:A (2.26) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166848 7uux:C (2.26) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166849 7uux:C (2.26) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166850 7uuz:A (3.2) BS01 NA ? GO:0005634 ... Q63008 36517601
    166851 7uv0:A (3.1) BS01 NA ? GO:0005634 ... Q63008 36517601
    166852 7uv0:A (3.1) BS02 NA ? GO:0005634 ... Q63008 36517601
    166853 7uv5:A (1.45) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 37185902
    166854 7uv6:C (2.72) BS03 MG ? GO:0003677 ... P03856 37407546
    166855 7uv7:C (3.02) BS03 MG ? GO:0003677 ... P03856 37407546
    166856 7uv9:K (3.2) BS02 FE 1.14.11.27 GO:0003677 ... Q9Y2K7 36797403
    166857 7uva:A (1.98) BS02 FE 1.14.11.27 N/A P59997 36797403
    166858 7uva:D (1.98) BS02 FE 1.14.11.27 N/A P59997 36797403
    166859 7uvp:A (3.7) BS02 MG ? GO:0003746 ... Q8A5S1 N/A
    166860 7uvv:3 (2.5) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    166861 7uvw:3 (2.37) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    166862 7uvx:3 (2.35) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    166863 7uvy:3 (2.39) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    166864 7uvz:3 (2.21) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    166865 7uw1:3 (2.21) BS02 ZN ? GO:0003735 ... B7IA18 37192172
    166866 7uwe:J (2.9) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 37196657
    166867 7uwe:J (2.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37196657
    166868 7uwe:J (2.9) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37196657
    166869 7uwh:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37196657
    166870 7uwh:J (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 37196657
    166871 7uwh:J (3.1) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 37196657
    166872 7uwu:A (2.19) BS01 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166873 7uwu:A (2.19) BS02 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166874 7uwu:A (2.19) BS03 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166875 7uwu:A (2.19) BS04 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166876 7uwu:B (2.19) BS01 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166877 7uwu:B (2.19) BS02 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166878 7uwu:B (2.19) BS03 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166879 7uwu:B (2.19) BS04 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166880 7uwv:A (1.7) BS09 CA ? N/A A0A2N0UYM2 38177679
    166881 7uwv:A (1.7) BS10 CA ? N/A A0A2N0UYM2 38177679
    166882 7uwv:A (1.7) BS11 CA ? N/A A0A2N0UYM2 38177679
    166883 7uww:A (1.61) BS04 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166884 7uww:A (1.61) BS05 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166885 7uww:A (1.61) BS06 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166886 7uww:A (1.61) BS07 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166887 7uww:B (1.61) BS03 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166888 7uww:B (1.61) BS04 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166889 7uww:B (1.61) BS05 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166890 7uww:B (1.61) BS06 CA ? GO:0030245 ... A0A2N0UYM2 38177679
    166891 7ux2:B (2.9) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 36697823
    166892 7ux4:A (2.23) BS01 ZN 1.1.1.80 GO:0000166 ... B0KBL1 35357038
    166893 7ux4:B (2.23) BS01 ZN 1.1.1.80 GO:0000166 ... B0KBL1 35357038
    166894 7ux4:C (2.23) BS01 ZN 1.1.1.80 GO:0000166 ... B0KBL1 35357038
    166895 7ux4:D (2.23) BS01 ZN 1.1.1.80 GO:0000166 ... B0KBL1 35357038
    166896 7uxc:D (3.2) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 36697823
    166897 7uxc:K (3.2) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 36697823
    166898 7uxd:A (1.5) BS02 ZN 3.5.4.38 GO:0003824 ... Q9HC16 36402773
    166899 7uxh:F (3.2) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 36697823
    166900 7uxh:M (3.2) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 36697823
    166901 7uxh:V (3.2) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 36697823
    166902 7uxh:c (3.2) BS02 MG 3.6.5.- GO:0003924 ... Q7L523 36697823
    166903 7uxw:A (2.57) BS07 MG 2.7.7.86 N/A Q8C6L5 N/A
    166904 7uxw:A (2.57) BS08 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166905 7uxw:C (2.57) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166906 7uxw:C (2.57) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166907 7uxy:C (3.15) BS03 MG ? GO:0003677 ... P03856 37407546
    166908 7uy4:A (1.98) BS03 MG 2.7.7.47 GO:0005524 ... P0AG05 N/A
    166909 7uy4:A (1.98) BS04 MG 2.7.7.47 GO:0005524 ... P0AG05 N/A
    166910 7uy4:B (1.98) BS03 MG 2.7.7.47 GO:0005524 ... P0AG05 N/A
    166911 7uy4:B (1.98) BS04 MG 2.7.7.47 GO:0005524 ... P0AG05 N/A
    166912 7uy5:D (3.5) BS02 ZN ? GO:0000781 ... D2CVN6 35831498
    166913 7uy5:I (3.5) BS02 ZN ? GO:0000781 ... A0PGB2 35831498
    166914 7uy6:D (2.9) BS02 ZN ? GO:0000781 ... D2CVN6 35831498
    166915 7uy7:A (4.2) BS03 ZN ? GO:0000781 ... A0PGB2 35831498
    166916 7uy8:A (4.5) BS01 ZN 2.7.7.7 GO:0000166 ... Q23AJ0 35831498
    166917 7uya:A (1.01) BS01 ZN 3.5.2.6 GO:0016787 ... A0A0F7KYQ8 38387069
    166918 7uya:A (1.01) BS02 ZN 3.5.2.6 GO:0016787 ... A0A0F7KYQ8 38387069
    166919 7uyb:A (1.11) BS01 ZN 3.5.2.6 GO:0016787 ... A0A0F7KYQ8 38387069
    166920 7uyb:A (1.11) BS02 ZN 3.5.2.6 GO:0016787 ... A0A0F7KYQ8 38387069
    166921 7uyc:A (1.02) BS01 ZN 3.5.2.6 GO:0016787 ... A0A0F7KYQ8 38387069
    166922 7uyc:A (1.02) BS02 ZN 3.5.2.6 GO:0016787 ... A0A0F7KYQ8 38387069
    166923 7uyd:A (1.0) BS01 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 38387069
    166924 7uyd:A (1.0) BS02 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 38387069
    166925 7uyd:B (1.0) BS01 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 38387069
    166926 7uyd:B (1.0) BS02 ZN 3.5.2.6 GO:0016787 ... B8QIQ9 38387069
    166927 7uyq:A (2.57) BS07 MG 2.7.7.86 N/A Q8C6L5 N/A
    166928 7uyq:A (2.57) BS08 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166929 7uyq:C (2.57) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166930 7uyq:C (2.57) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166931 7uyz:A (2.49) BS05 MG 2.7.7.86 N/A Q8C6L5 N/A
    166932 7uyz:A (2.49) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166933 7uyz:A (2.49) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166934 7uyz:C (2.49) BS05 MG 2.7.7.86 N/A Q8C6L5 N/A
    166935 7uyz:C (2.49) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166936 7uyz:C (2.49) BS07 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166937 7uzr:A (2.7) BS06 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166938 7uzr:A (2.7) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    166939 7uzr:A (2.7) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    166940 7uzr:C (2.7) BS06 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166941 7uzr:C (2.7) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    166942 7uzr:C (2.7) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    166943 7v04:A (1.91) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    166944 7v04:A (1.91) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 36655124
    166945 7v08:I (2.36) BS02 ZN ? GO:0000055 ... Q08004 36864048
    166946 7v08:b (2.36) BS04 MG ? GO:0000054 ... Q02892 36864048
    166947 7v08:g (2.36) BS02 ZN ? GO:0002181 ... P87262 36864048
    166948 7v08:j (2.36) BS03 ZN ? GO:0000448 ... P49166 36864048
    166949 7v08:m (2.36) BS03 MG ? GO:0000055 ... P53742 36864048
    166950 7v08:p (2.36) BS02 ZN ? GO:0002181 ... P0CX25 36864048
    166951 7v08:u (2.36) BS02 ZN ? GO:0001671 ... Q07915 36864048
    166952 7v09:A (2.0) BS01 MG ? GO:0030288 ... A0A0H3CHG3 N/A
    166953 7v09:A (2.0) BS02 MG ? GO:0030288 ... A0A0H3CHG3 N/A
    166954 7v09:A (2.0) BS03 MG ? GO:0030288 ... A0A0H3CHG3 N/A
    166955 7v09:B (2.0) BS01 MG ? GO:0030288 ... A0A0H3CHG3 N/A
    166956 7v09:B (2.0) BS02 MG ? GO:0030288 ... A0A0H3CHG3 N/A
    166957 7v0c:A (2.57) BS06 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166958 7v0c:A (2.57) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    166959 7v0c:A (2.57) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    166960 7v0c:C (2.57) BS06 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166961 7v0c:C (2.57) BS07 MN 2.7.7.86 N/A Q8C6L5 N/A
    166962 7v0c:C (2.57) BS08 MN 2.7.7.86 N/A Q8C6L5 N/A
    166963 7v0f:A (2.35) BS01 ZN 4.1.2.50 GO:0016829 ... A0A081GYS3 36442121
    166964 7v0f:A (2.35) BS02 ZN 4.1.2.50 GO:0016829 ... A0A081GYS3 36442121
    166965 7v0f:B (2.35) BS01 ZN 4.1.2.50 GO:0016829 ... A0A081GYS3 36442121
    166966 7v0g:E (1.63) BS04 MG 2.7.11.11 GO:0000122 ... P05132 36601807
    166967 7v0i:A (1.9) BS07 CA 3.2.1.- GO:0004553 ... A3DCY5 36990218
    166968 7v0i:B (1.9) BS07 CA 3.2.1.- GO:0004553 ... A3DCY5 36990218
    166969 7v0i:C (1.9) BS06 CA 3.2.1.- GO:0004553 ... A3DCY5 36990218
    166970 7v0j:A (2.4) BS02 CA 3.2.1.- GO:0004553 ... A3DCY5 36990218
    166971 7v0j:B (2.4) BS02 CA 3.2.1.- GO:0004553 ... A3DCY5 36990218
    166972 7v0j:C (2.4) BS03 CA 3.2.1.- GO:0004553 ... A3DCY5 36990218
    166973 7v0r:A (2.51) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166974 7v0r:A (2.51) BS07 MG 2.7.7.86 N/A Q8C6L5 N/A
    166975 7v0r:A (2.51) BS08 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166976 7v0r:C (2.51) BS06 MG 2.7.7.86 N/A Q8C6L5 N/A
    166977 7v0r:C (2.51) BS07 MG 2.7.7.86 N/A Q8C6L5 N/A
    166978 7v0r:C (2.51) BS08 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166979 7v0w:A (2.66) BS05 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166980 7v0w:A (2.66) BS06 MN 2.7.7.86 N/A Q8C6L5 N/A
    166981 7v0w:C (2.66) BS05 ZN 2.7.7.86 N/A Q8C6L5 N/A
    166982 7v0w:C (2.66) BS06 MN 2.7.7.86 N/A Q8C6L5 N/A
    166983 7v1g:A (1.38) BS01 MG 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004482 ... C4TPE0 35758665
    166984 7v1v:A (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166985 7v1v:A (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166986 7v1v:B (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166987 7v1v:B (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166988 7v1v:C (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166989 7v1v:C (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166990 7v1v:D (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166991 7v1v:D (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166992 7v1v:E (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166993 7v1v:E (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166994 7v1v:F (1.96) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166995 7v1v:F (1.96) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166996 7v1w:A (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166997 7v1w:A (1.86) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166998 7v1w:B (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    166999 7v1w:B (1.86) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167000 7v1w:C (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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