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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166201 7ukh:I (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    166202 7ukh:J (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    166203 7ukh:J (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    166204 7ukh:J (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    166205 7ukh:K (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    166206 7ukh:K (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    166207 7ukh:K (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    166208 7ukh:L (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    166209 7ukh:L (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    166210 7ukh:L (2.33) BS03 CA ? GO:0001508 ... Q9NS61 35597238
    166211 7uko:A (2.604) BS01 CA ? GO:0007155 ... P08514 36113427
    166212 7uko:A (2.604) BS02 CA ? GO:0007155 ... P08514 36113427
    166213 7uko:A (2.604) BS03 CA ? GO:0007155 ... P08514 36113427
    166214 7uko:A (2.604) BS04 CA ? GO:0007155 ... P08514 36113427
    166215 7uko:B (2.604) BS01 MN ? N/A P05106 36113427
    166216 7uko:B (2.604) BS02 MN ? N/A P05106 36113427
    166217 7uko:B (2.604) BS03 MN ? N/A P05106 36113427
    166218 7uko:C (2.604) BS01 CA ? GO:0007155 ... P08514 36113427
    166219 7uko:C (2.604) BS02 CA ? GO:0007155 ... P08514 36113427
    166220 7uko:C (2.604) BS03 CA ? GO:0007155 ... P08514 36113427
    166221 7uko:C (2.604) BS04 CA ? GO:0007155 ... P08514 36113427
    166222 7uko:D (2.604) BS01 MN ? N/A P05106 36113427
    166223 7uko:D (2.604) BS02 MN ? N/A P05106 36113427
    166224 7uko:D (2.604) BS03 MN ? N/A P05106 36113427
    166225 7ukp:A (2.80113) BS01 CA ? GO:0007155 ... P08514 36113427
    166226 7ukp:A (2.80113) BS02 CA ? GO:0007155 ... P08514 36113427
    166227 7ukp:A (2.80113) BS03 CA ? GO:0007155 ... P08514 36113427
    166228 7ukp:A (2.80113) BS04 CA ? GO:0007155 ... P08514 36113427
    166229 7ukp:B (2.80113) BS01 MN ? N/A P05106 36113427
    166230 7ukp:B (2.80113) BS02 MN ? N/A P05106 36113427
    166231 7ukp:C (2.80113) BS01 CA ? GO:0007155 ... P08514 36113427
    166232 7ukp:C (2.80113) BS02 CA ? GO:0007155 ... P08514 36113427
    166233 7ukp:C (2.80113) BS03 CA ? GO:0007155 ... P08514 36113427
    166234 7ukp:C (2.80113) BS04 CA ? GO:0007155 ... P08514 36113427
    166235 7ukp:D (2.80113) BS01 MN ? N/A P05106 36113427
    166236 7ukp:D (2.80113) BS02 MN ? N/A P05106 36113427
    166237 7ukt:A (2.36994) BS01 CA ? GO:0007155 ... P08514 36113427
    166238 7ukt:A (2.36994) BS02 CA ? GO:0007155 ... P08514 36113427
    166239 7ukt:A (2.36994) BS03 CA ? GO:0007155 ... P08514 36113427
    166240 7ukt:A (2.36994) BS04 CA ? GO:0007155 ... P08514 36113427
    166241 7ukt:B (2.36994) BS01 MN ? N/A P05106 36113427
    166242 7ukt:B (2.36994) BS02 MN ? N/A P05106 36113427
    166243 7ukt:B (2.36994) BS03 MN ? N/A P05106 36113427
    166244 7ukt:C (2.36994) BS01 CA ? GO:0007155 ... P08514 36113427
    166245 7ukt:C (2.36994) BS02 CA ? GO:0007155 ... P08514 36113427
    166246 7ukt:C (2.36994) BS03 CA ? GO:0007155 ... P08514 36113427
    166247 7ukt:C (2.36994) BS04 CA ? GO:0007155 ... P08514 36113427
    166248 7ukt:D (2.36994) BS01 MN ? N/A P05106 36113427
    166249 7ukt:D (2.36994) BS02 MN ? N/A P05106 36113427
    166250 7ukt:D (2.36994) BS03 MN ? N/A P05106 36113427
    166251 7uld:A (1.3) BS02 MN 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    166252 7uld:A (1.3) BS03 MN 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    166253 7ule:A (1.7) BS03 MN 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    166254 7ule:A (1.7) BS04 MN 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    166255 7ulf:A (1.61) BS03 MN 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    166256 7ulf:A (1.61) BS04 MN 6.3.2.31
    6.3.2.34    		 GO:0005525 ... O28028 N/A
    166257 7ult:B (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    166258 7ult:B (1.9) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    166259 7ult:D (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    166260 7ult:D (1.9) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    166261 7um1:D (4.2) BS01 ZN 2.7.7.6 GO:0000428 ... A0A172JI62 35725571
    166262 7umh:L (2.6) BS09 CA ? GO:0005886 ... P37277 37532717
    166263 7umh:U (2.6) BS09 CA ? GO:0005886 ... P37277 37532717
    166264 7umh:U (2.6) BS11 CA ? GO:0005886 ... P37277 37532717
    166265 7umh:l (2.6) BS03 CA ? GO:0005886 ... P37277 37532717
    166266 7ump:A (1.8) BS01 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 35926869
    166267 7umr:A (2.53) BS01 MN ? GO:0003723 ... C6H0Y9 36603507
    166268 7umr:A (2.53) BS02 MN ? GO:0003723 ... C6H0Y9 36603507
    166269 7ums:a (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166270 7ums:a (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166271 7ums:a (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166272 7ums:a (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166273 7ums:b (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166274 7ums:b (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166275 7ums:b (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166276 7ums:b (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166277 7ums:c (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166278 7ums:c (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166279 7ums:c (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166280 7ums:c (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166281 7ums:d (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166282 7ums:d (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166283 7ums:d (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166284 7ums:d (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166285 7ums:e (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166286 7ums:e (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166287 7ums:e (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166288 7ums:e (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166289 7ums:f (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166290 7ums:f (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166291 7ums:f (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166292 7ums:f (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166293 7ums:g (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166294 7ums:g (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166295 7ums:g (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166296 7ums:g (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166297 7ums:h (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166298 7ums:h (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166299 7ums:h (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166300 7ums:h (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166301 7ums:i (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166302 7ums:i (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166303 7ums:i (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166304 7ums:i (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166305 7ums:j (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166306 7ums:j (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166307 7ums:j (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166308 7ums:j (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166309 7ums:k (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166310 7ums:k (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166311 7ums:k (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166312 7ums:k (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166313 7ums:l (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166314 7ums:l (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166315 7ums:l (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166316 7ums:l (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166317 7ums:m (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166318 7ums:m (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166319 7ums:m (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166320 7ums:m (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166321 7ums:n (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166322 7ums:n (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166323 7ums:n (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166324 7ums:n (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166325 7ums:o (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166326 7ums:o (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166327 7ums:o (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166328 7ums:o (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166329 7ums:p (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166330 7ums:p (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166331 7ums:p (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166332 7ums:p (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166333 7ums:q (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166334 7ums:q (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166335 7ums:q (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166336 7ums:q (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166337 7ums:r (3.5) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166338 7ums:r (3.5) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166339 7ums:r (3.5) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166340 7ums:r (3.5) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166341 7umt:a (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166342 7umt:a (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166343 7umt:a (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166344 7umt:a (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166345 7umt:b (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166346 7umt:b (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166347 7umt:b (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166348 7umt:b (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166349 7umt:c (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166350 7umt:c (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166351 7umt:c (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166352 7umt:c (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166353 7umt:d (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166354 7umt:d (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166355 7umt:d (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166356 7umt:d (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166357 7umt:e (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166358 7umt:e (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166359 7umt:e (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166360 7umt:e (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166361 7umt:f (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166362 7umt:f (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166363 7umt:f (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166364 7umt:f (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166365 7umt:g (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166366 7umt:g (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166367 7umt:g (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166368 7umt:g (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166369 7umt:h (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166370 7umt:h (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166371 7umt:h (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166372 7umt:h (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166373 7umt:i (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166374 7umt:i (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166375 7umt:i (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166376 7umt:i (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166377 7umt:j (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166378 7umt:j (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166379 7umt:j (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166380 7umt:j (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166381 7umt:k (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166382 7umt:k (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166383 7umt:k (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166384 7umt:k (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166385 7umt:l (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166386 7umt:l (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166387 7umt:l (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166388 7umt:l (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166389 7umt:m (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166390 7umt:m (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166391 7umt:m (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166392 7umt:m (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166393 7umt:n (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166394 7umt:n (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166395 7umt:n (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166396 7umt:n (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    166397 7umt:o (3.4) BS01 CA ? GO:0016020 ... B1NP55 35924923
    166398 7umt:o (3.4) BS02 CA ? GO:0016020 ... B1NP55 35924923
    166399 7umt:o (3.4) BS03 CA ? GO:0016020 ... B1NP55 35924923
    166400 7umt:o (3.4) BS04 CA ? GO:0016020 ... B1NP55 35924923
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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