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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166001 7ufh:B (2.99768) BS02 MN ? N/A P05106 36113427
    166002 7ufh:B (2.99768) BS03 MN ? N/A P05106 36113427
    166003 7ufh:C (2.99768) BS01 CA ? GO:0007155 ... P08514 36113427
    166004 7ufh:C (2.99768) BS02 CA ? GO:0007155 ... P08514 36113427
    166005 7ufh:C (2.99768) BS03 CA ? GO:0007155 ... P08514 36113427
    166006 7ufh:C (2.99768) BS04 CA ? GO:0007155 ... P08514 36113427
    166007 7ufh:D (2.99768) BS01 MN ? N/A P05106 36113427
    166008 7ufh:D (2.99768) BS02 MN ? N/A P05106 36113427
    166009 7ufh:D (2.99768) BS03 MN ? N/A P05106 36113427
    166010 7ufk:A (2.38) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 36256797
    166011 7ufk:B (2.38) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 36256797
    166012 7ufl:A (2.84) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 36256797
    166013 7ufl:B (2.84) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 36256797
    166014 7ufr:A (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166015 7ufr:B (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166016 7ufr:C (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166017 7ufr:D (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166018 7ufs:A (3.4) BS01 ZN ? GO:0003824 ... Q8G4Q0 N/A
    166019 7ufs:B (3.4) BS01 ZN ? GO:0003824 ... Q8G4Q0 N/A
    166020 7ufs:C (3.4) BS01 ZN ? GO:0003824 ... Q8G4Q0 N/A
    166021 7ufs:D (3.4) BS01 ZN ? GO:0003824 ... Q8G4Q0 N/A
    166022 7uft:A (2.9) BS01 ZN ? GO:0003824 ... Q8G4P9 N/A
    166023 7uft:B (2.9) BS01 ZN ? GO:0003824 ... Q8G4P9 N/A
    166024 7uft:C (2.9) BS01 ZN ? GO:0003824 ... Q8G4P9 N/A
    166025 7uft:D (2.9) BS01 ZN ? GO:0003824 ... Q8G4P9 N/A
    166026 7ufu:A (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166027 7ufu:B (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166028 7ufu:C (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166029 7ufu:D (2.7) BS01 ZN ? GO:0003824 ... Q8G4Q1 N/A
    166030 7ufx:C (2.8) BS03 MG ? GO:0003677 ... P03856 37407546
    166031 7ug6:m (2.9) BS03 MG ? GO:0000055 ... P53742 36536102
    166032 7ug7:LB (2.58) BS03 MG ? GO:0000027 ... P60422 35500116
    166033 7ug7:LB (2.58) BS04 MG ? GO:0000027 ... P60422 35500116
    166034 7ug7:LB (2.58) BS05 MG ? GO:0000027 ... P60422 35500116
    166035 7ug7:LB (2.58) BS06 MG ? GO:0000027 ... P60422 35500116
    166036 7ug7:LX (2.58) BS02 MG ? GO:0000027 ... P60624 35500116
    166037 7ug7:Le (2.58) BS03 ZN ? GO:0002181 ... P0A7M9 35500116
    166038 7ug7:Lj (2.58) BS02 ZN ? GO:0002181 ... P0A7Q6 35500116
    166039 7ug8:A (1.796) BS02 CA ? GO:0015849 ... Q0I6F8 N/A
    166040 7ug8:B (1.796) BS02 CA ? GO:0015849 ... Q0I6F8 N/A
    166041 7ug9:A (1.69) BS01 MN 3.1.13.-
    3.1.3.97    		 GO:0000166 ... P77766 35904778
    166042 7ug9:A (1.69) BS02 MN 3.1.13.-
    3.1.3.97    		 GO:0000166 ... P77766 35904778
    166043 7ug9:A (1.69) BS03 MN 3.1.13.-
    3.1.3.97    		 GO:0000166 ... P77766 35904778
    166044 7ugw:B (3.0) BS02 MG 5.6.2.2 GO:0003677 ... P9WG45 35996001
    166045 7uh8:A (2.75002) BS01 CA ? GO:0007155 ... P08514 36113427
    166046 7uh8:A (2.75002) BS02 CA ? GO:0007155 ... P08514 36113427
    166047 7uh8:A (2.75002) BS03 CA ? GO:0007155 ... P08514 36113427
    166048 7uh8:A (2.75002) BS04 CA ? GO:0007155 ... P08514 36113427
    166049 7uh8:B (2.75002) BS01 MN ? N/A P05106 36113427
    166050 7uh8:B (2.75002) BS02 MN ? N/A P05106 36113427
    166051 7uh8:B (2.75002) BS03 MN ? N/A P05106 36113427
    166052 7uh8:C (2.75002) BS01 CA ? GO:0007155 ... P08514 36113427
    166053 7uh8:C (2.75002) BS02 CA ? GO:0007155 ... P08514 36113427
    166054 7uh8:C (2.75002) BS03 CA ? GO:0007155 ... P08514 36113427
    166055 7uh8:C (2.75002) BS04 CA ? GO:0007155 ... P08514 36113427
    166056 7uh8:D (2.75002) BS01 MN ? N/A P05106 36113427
    166057 7uh8:D (2.75002) BS02 MN ? N/A P05106 36113427
    166058 7uh8:D (2.75002) BS03 MN ? N/A P05106 36113427
    166059 7uh9:A (-1.00) BS01 CA ? GO:0005509 ... P19429
    P63316    		 35649123
    166060 7uha:A (-1.00) BS01 CA ? GO:0005509 ... P19429
    P63316    		 35649123
    166061 7uhf:A (3.1) BS02 CA ? GO:0005216 ... Q01668 35477996
    166062 7uhf:D (3.1) BS01 CA ? N/A P54289 35477996
    166063 7uhg:A (3.0) BS01 CA ? GO:0005216 ... Q01668 35477996
    166064 7uhg:D (3.0) BS01 CA ? N/A P54289 35477996
    166065 7uhh:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166066 7uhh:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166067 7uhi:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166068 7uhi:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166069 7uhj:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166070 7uhj:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166071 7uhk:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166072 7uhk:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166073 7uhl:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166074 7uhl:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166075 7uhm:A (2.7) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166076 7uhm:A (2.7) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166077 7uhn:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166078 7uhn:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166079 7uho:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166080 7uho:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166081 7uhp:A (2.6) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166082 7uhp:A (2.6) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166083 7uhq:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166084 7uhq:A (2.2) BS02 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166085 7uhr:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166086 7uht:A (2.2) BS01 ZN 3.5.2.6 GO:0008270 ... B2FTM1 36450742
    166087 7uhv:A (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166088 7uhv:A (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166089 7uhv:B (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166090 7uhv:B (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166091 7uhw:A (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166092 7uhw:A (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166093 7uhw:B (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166094 7uhw:B (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166095 7uhx:A (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166096 7uhx:A (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166097 7uhx:B (1.3) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166098 7uhx:B (1.3) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    166099 7uhy:A (3.66) BS01 ZN ? GO:0005515 ... Q9NXC5 35831510
    166100 7uhy:A (3.66) BS02 ZN ? GO:0005515 ... Q9NXC5 35831510
    166101 7uhy:A (3.66) BS03 ZN ? GO:0005515 ... Q9NXC5 35831510
    166102 7uhy:A (3.66) BS04 ZN ? GO:0005515 ... Q9NXC5 35831510
    166103 7uhy:B (3.66) BS01 ZN ? GO:0005515 ... Q9NXC5 35831510
    166104 7uhy:B (3.66) BS02 ZN ? GO:0005515 ... Q9NXC5 35831510
    166105 7uhy:B (3.66) BS03 ZN ? GO:0005515 ... Q9NXC5 35831510
    166106 7uhy:B (3.66) BS04 ZN ? GO:0005515 ... Q9NXC5 35831510
    166107 7uhy:C (3.66) BS01 ZN 2.3.2.27 GO:0005515 ... Q96S15 35831510
    166108 7uhy:C (3.66) BS02 ZN 2.3.2.27 GO:0005515 ... Q96S15 35831510
    166109 7uhy:C (3.66) BS03 ZN 2.3.2.27 GO:0005515 ... Q96S15 35831510
    166110 7uhy:C (3.66) BS04 ZN 2.3.2.27 GO:0005515 ... Q96S15 35831510
    166111 7uhy:D (3.66) BS02 ZN ? GO:0005515 ... Q6PJI9 35831510
    166112 7uhy:D (3.66) BS03 ZN ? GO:0005515 ... Q6PJI9 35831510
    166113 7uhy:D (3.66) BS04 ZN ? GO:0005515 ... Q6PJI9 35831510
    166114 7uhy:D (3.66) BS05 ZN ? GO:0005515 ... Q6PJI9 35831510
    166115 7ui4:A (2.51) BS01 ZN 2.4.2.- GO:0006400 ... P0DW33 36928176
    166116 7ui5:A (-1.00) BS01 CA ? GO:0002523 ... P06702 36194634
    166117 7ui5:A (-1.00) BS02 CA ? GO:0002523 ... P06702 36194634
    166118 7ui5:B (-1.00) BS01 CA ? GO:0002523 ... P06702 36194634
    166119 7ui5:B (-1.00) BS02 CA ? GO:0002523 ... P06702 36194634
    166120 7ui6:A (3.7) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-    		 GO:0000139 ... O95461 N/A
    166121 7ui6:A (3.7) BS02 MN 2.4.-.-
    2.4.1.-
    2.4.2.-    		 GO:0000139 ... O95461 N/A
    166122 7ui6:B (3.7) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-    		 GO:0000139 ... O95461 N/A
    166123 7ui7:A (3.4) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-    		 GO:0000139 ... O95461 N/A
    166124 7ui7:A (3.4) BS02 MN 2.4.-.-
    2.4.1.-
    2.4.2.-    		 GO:0000139 ... O95461 N/A
    166125 7uii:a (2.6) BS01 CA N/A N/A N/A N/A
    166126 7uik:T (7.7) BS03 ZN ? GO:0000981 ... P04386 36731470
    166127 7uik:T (7.7) BS04 ZN ? GO:0000981 ... P04386 36731470
    166128 7uik:U (7.7) BS03 ZN ? GO:0000981 ... P04386 36731470
    166129 7uik:U (7.7) BS04 ZN ? GO:0000981 ... P04386 36731470
    166130 7uio:GA (3.3) BS03 ZN ? GO:0000981 ... P04386 36731470
    166131 7uio:GA (3.3) BS04 ZN ? GO:0000981 ... P04386 36731470
    166132 7uio:GB (3.3) BS03 ZN ? GO:0000981 ... P04386 36731470
    166133 7uio:GB (3.3) BS04 ZN ? GO:0000981 ... P04386 36731470
    166134 7uiv:C (3.38) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    166135 7uiv:D (3.38) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    166136 7uix:B (3.24) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    166137 7uix:C (3.24) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    166138 7uiy:B (3.22) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    166139 7uiz:C (3.24) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    166140 7uiz:E (3.24) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    166141 7uj0:A (3.26) BS03 MG ? GO:0004176 ... P0ABH9 36329286
    166142 7uj0:B (3.26) BS04 MG ? GO:0004176 ... P0ABH9 36329286
    166143 7uj0:D (3.26) BS05 MG ? GO:0004176 ... P0ABH9 36329286
    166144 7uj4:A (1.96) BS02 MG ? GO:0005634 ... O00255 36922589
    166145 7uj4:B (1.96) BS02 MG ? GO:0005634 ... O00255 36922589
    166146 7uje:A (2.49997) BS01 CA ? GO:0007155 ... P08514 36113427
    166147 7uje:A (2.49997) BS02 CA ? GO:0007155 ... P08514 36113427
    166148 7uje:A (2.49997) BS03 CA ? GO:0007155 ... P08514 36113427
    166149 7uje:A (2.49997) BS04 CA ? GO:0007155 ... P08514 36113427
    166150 7uje:B (2.49997) BS01 MN ? N/A P05106 36113427
    166151 7uje:B (2.49997) BS02 MN ? N/A P05106 36113427
    166152 7uje:B (2.49997) BS03 MN ? N/A P05106 36113427
    166153 7uje:C (2.49997) BS01 CA ? GO:0007155 ... P08514 36113427
    166154 7uje:C (2.49997) BS02 CA ? GO:0007155 ... P08514 36113427
    166155 7uje:C (2.49997) BS03 CA ? GO:0007155 ... P08514 36113427
    166156 7uje:C (2.49997) BS04 CA ? GO:0007155 ... P08514 36113427
    166157 7uje:D (2.49997) BS01 MN ? N/A P05106 36113427
    166158 7uje:D (2.49997) BS02 MN ? N/A P05106 36113427
    166159 7uje:D (2.49997) BS03 MN ? N/A P05106 36113427
    166160 7ujk:A (2.43266) BS01 CA ? GO:0007155 ... P08514 36113427
    166161 7ujk:A (2.43266) BS02 CA ? GO:0007155 ... P08514 36113427
    166162 7ujk:A (2.43266) BS03 CA ? GO:0007155 ... P08514 36113427
    166163 7ujk:A (2.43266) BS04 CA ? GO:0007155 ... P08514 36113427
    166164 7ujk:B (2.43266) BS01 MG ? N/A P05106 36113427
    166165 7ujk:B (2.43266) BS02 CA ? N/A P05106 36113427
    166166 7ujk:B (2.43266) BS03 CA ? N/A P05106 36113427
    166167 7ujk:C (2.43266) BS01 CA ? GO:0007155 ... P08514 36113427
    166168 7ujk:C (2.43266) BS02 CA ? GO:0007155 ... P08514 36113427
    166169 7ujk:C (2.43266) BS03 CA ? GO:0007155 ... P08514 36113427
    166170 7ujk:C (2.43266) BS04 CA ? GO:0007155 ... P08514 36113427
    166171 7ujk:D (2.43266) BS01 MG ? N/A P05106 36113427
    166172 7ujk:D (2.43266) BS02 CA ? N/A P05106 36113427
    166173 7ujk:D (2.43266) BS03 CA ? N/A P05106 36113427
    166174 7ujp:A (2.56) BS04 MG 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    166175 7ujp:B (2.56) BS04 MG 2.7.11.17 GO:0004672 ... Q9UQM7 35830796
    166176 7ujv:B (1.8) BS02 FE 1.14.11.29 GO:0005506 ... Q9GZT9 38418569
    166177 7ujx:E (2.4) BS04 MG 2.7.11.11 GO:0000122 ... P05132 36601807
    166178 7uk2:A (1.6) BS02 ZN ? N/A F8W4B7 36355493
    166179 7uk7:A (1.95) BS02 MG 6.3.1.- GO:0005524 ... P33222 36745518
    166180 7uk7:A (1.95) BS03 MG 6.3.1.- GO:0005524 ... P33222 36745518
    166181 7uk9:A (2.60002) BS01 CA ? GO:0007155 ... P08514 36113427
    166182 7uk9:A (2.60002) BS02 CA ? GO:0007155 ... P08514 36113427
    166183 7uk9:A (2.60002) BS03 CA ? GO:0007155 ... P08514 36113427
    166184 7uk9:A (2.60002) BS04 CA ? GO:0007155 ... P08514 36113427
    166185 7uk9:B (2.60002) BS01 MN ? N/A P05106 36113427
    166186 7uk9:B (2.60002) BS02 MN ? N/A P05106 36113427
    166187 7uk9:B (2.60002) BS03 MN ? N/A P05106 36113427
    166188 7uk9:C (2.60002) BS01 CA ? GO:0007155 ... P08514 36113427
    166189 7uk9:C (2.60002) BS02 CA ? GO:0007155 ... P08514 36113427
    166190 7uk9:C (2.60002) BS03 CA ? GO:0007155 ... P08514 36113427
    166191 7uk9:C (2.60002) BS04 CA ? GO:0007155 ... P08514 36113427
    166192 7uk9:D (2.60002) BS01 MN ? N/A P05106 36113427
    166193 7uk9:D (2.60002) BS02 MN ? N/A P05106 36113427
    166194 7uk9:D (2.60002) BS03 MN ? N/A P05106 36113427
    166195 7ukh:A (2.33) BS01 ZN ? GO:0005216 ... Q9NZV8 35597238
    166196 7ukh:B (2.33) BS01 ZN ? GO:0005216 ... Q9NZV8 35597238
    166197 7ukh:C (2.33) BS01 ZN ? GO:0005216 ... Q9NZV8 35597238
    166198 7ukh:D (2.33) BS01 ZN ? GO:0005216 ... Q9NZV8 35597238
    166199 7ukh:I (2.33) BS01 CA ? GO:0001508 ... Q9NS61 35597238
    166200 7ukh:I (2.33) BS02 CA ? GO:0001508 ... Q9NS61 35597238
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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