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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    165601 7u71:AAA (1.975) BS05 CA ? GO:0005509 ... Q99PF4 N/A
    165602 7u71:AAA (1.975) BS06 CA ? GO:0005509 ... Q99PF4 N/A
    165603 7u72:A (1.53) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165604 7u73:A (1.56) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165605 7u73:A (1.56) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165606 7u74:A (1.52) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165607 7u74:A (1.52) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165608 7u75:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165609 7u75:A (1.55) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165610 7u76:A (1.69) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165611 7u76:A (1.69) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165612 7u77:A (1.58) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165613 7u77:A (1.58) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165614 7u77:A (1.58) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165615 7u78:A (1.61) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165616 7u78:A (1.61) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165617 7u78:A (1.61) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165618 7u79:A (1.69) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165619 7u79:A (1.69) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165620 7u7a:A (1.58) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165621 7u7a:A (1.58) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165622 7u7b:A (1.58) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165623 7u7b:A (1.58) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165624 7u7c:A (1.55) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165625 7u7c:A (1.55) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165626 7u7d:A (1.57) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165627 7u7d:A (1.57) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165628 7u7d:A (1.57) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165629 7u7e:A (1.58) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165630 7u7e:A (1.58) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165631 7u7f:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165632 7u7f:A (1.65) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165633 7u7g:A (1.77) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165634 7u7g:A (1.77) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165635 7u7i:A (1.57) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165636 7u7i:A (1.57) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165637 7u7j:A (1.58) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165638 7u7j:A (1.58) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165639 7u7k:A (1.67) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165640 7u7k:A (1.67) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165641 7u7l:A (1.47) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165642 7u7o:C (2.97) BS03 MG ? GO:0003677 ... P03856 37407546
    165643 7u7r:A (1.64) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165644 7u7s:A (1.6) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165645 7u7s:A (1.6) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165646 7u7t:A (1.55) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165647 7u7t:A (1.55) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165648 7u7u:A (1.54) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165649 7u7u:A (1.54) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165650 7u7v:A (1.65) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165651 7u7v:A (1.65) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165652 7u7w:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165653 7u7w:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165654 7u7x:A (1.65) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165655 7u7x:A (1.65) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165656 7u7y:A (1.78) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165657 7u7y:A (1.78) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165658 7u7z:A (1.67) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165659 7u7z:A (1.67) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165660 7u80:A (1.83) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165661 7u80:A (1.83) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165662 7u81:A (1.6) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165663 7u81:A (1.6) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165664 7u82:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165665 7u82:A (1.55) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165666 7u83:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165667 7u83:A (1.55) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165668 7u84:A (1.71) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165669 7u84:A (1.71) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 35487947
    165670 7u8f:A (3.15) BS02 ZN ? GO:0005515 ... Q96SW2 36863346
    165671 7u8f:D (3.15) BS02 ZN ? GO:0005515 ... Q96SW2 36863346
    165672 7u8y:A (2.22) BS03 MN 3.1.11.2 GO:0003676 ... Q91XB0 N/A
    165673 7u8y:B (2.22) BS03 MN 3.1.11.2 GO:0003676 ... Q91XB0 N/A
    165674 7u8z:A (1.85) BS02 ZN ? N/A F8W4B7 36351184
    165675 7u8z:B (1.85) BS02 ZN ? N/A F8W4B7 36351184
    165676 7u8z:C (1.85) BS02 ZN ? N/A F8W4B7 36351184
    165677 7u8z:D (1.85) BS02 ZN ? N/A F8W4B7 36351184
    165678 7u9f:A (2.70001) BS01 CA ? GO:0007155 ... P08514 36113427
    165679 7u9f:A (2.70001) BS02 CA ? GO:0007155 ... P08514 36113427
    165680 7u9f:A (2.70001) BS03 CA ? GO:0007155 ... P08514 36113427
    165681 7u9f:A (2.70001) BS04 CA ? GO:0007155 ... P08514 36113427
    165682 7u9f:B (2.70001) BS01 MN ? N/A P05106 36113427
    165683 7u9f:B (2.70001) BS02 MN ? N/A P05106 36113427
    165684 7u9f:B (2.70001) BS03 MN ? N/A P05106 36113427
    165685 7u9f:C (2.70001) BS01 CA ? GO:0007155 ... P08514 36113427
    165686 7u9f:C (2.70001) BS02 CA ? GO:0007155 ... P08514 36113427
    165687 7u9f:C (2.70001) BS03 CA ? GO:0007155 ... P08514 36113427
    165688 7u9f:C (2.70001) BS04 CA ? GO:0007155 ... P08514 36113427
    165689 7u9f:D (2.70001) BS01 MN ? N/A P05106 36113427
    165690 7u9f:D (2.70001) BS02 MN ? N/A P05106 36113427
    165691 7u9f:D (2.70001) BS03 MN ? N/A P05106 36113427
    165692 7u9k:B (2.0) BS02 MG 6.3.2.4 GO:0003824 ... Q2FWH3 37948922
    165693 7u9n:A (2.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165694 7u9n:A (2.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165695 7u9n:B (2.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165696 7u9n:B (2.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165697 7u9n:C (2.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165698 7u9n:C (2.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165699 7u9n:D (2.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165700 7u9n:D (2.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 37563323
    165701 7u9q:A (3.11) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165702 7u9q:B (3.11) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165703 7u9q:C (3.11) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165704 7u9q:D (3.11) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165705 7u9r:A (3.69) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165706 7u9r:B (3.69) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165707 7u9r:C (3.69) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165708 7u9r:D (3.69) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165709 7u9t:A (2.68) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165710 7u9t:B (2.68) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165711 7u9t:C (2.68) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165712 7u9t:D (2.68) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165713 7u9v:A (2.25492) BS01 CA ? GO:0007155 ... P08514 36113427
    165714 7u9v:A (2.25492) BS02 CA ? GO:0007155 ... P08514 36113427
    165715 7u9v:A (2.25492) BS03 CA ? GO:0007155 ... P08514 36113427
    165716 7u9v:A (2.25492) BS04 CA ? GO:0007155 ... P08514 36113427
    165717 7u9v:B (2.25492) BS01 MN ? N/A P05106 36113427
    165718 7u9v:B (2.25492) BS02 MN ? N/A P05106 36113427
    165719 7u9v:B (2.25492) BS03 MN ? N/A P05106 36113427
    165720 7u9v:C (2.25492) BS01 CA ? GO:0007155 ... P08514 36113427
    165721 7u9v:C (2.25492) BS02 CA ? GO:0007155 ... P08514 36113427
    165722 7u9v:C (2.25492) BS03 CA ? GO:0007155 ... P08514 36113427
    165723 7u9v:C (2.25492) BS04 CA ? GO:0007155 ... P08514 36113427
    165724 7u9v:D (2.25492) BS01 MN ? N/A P05106 36113427
    165725 7u9v:D (2.25492) BS02 MN ? N/A P05106 36113427
    165726 7u9v:D (2.25492) BS03 MN ? N/A P05106 36113427
    165727 7u9x:A (2.58) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165728 7u9x:B (2.58) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165729 7u9x:C (2.58) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165730 7u9x:D (2.58) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165731 7u9z:A (3.29) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165732 7u9z:A (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    165733 7u9z:B (3.29) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165734 7u9z:B (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    165735 7u9z:C (3.29) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165736 7u9z:C (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    165737 7u9z:D (3.29) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165738 7u9z:D (3.29) BS03 CA ? GO:0001666 ... Q92736 35857850
    165739 7ua1:A (2.99) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165740 7ua1:B (2.99) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165741 7ua1:C (2.99) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165742 7ua1:D (2.99) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165743 7ua3:A (2.97) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165744 7ua3:B (2.97) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165745 7ua3:C (2.97) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165746 7ua3:D (2.97) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165747 7ua4:A (2.93) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165748 7ua4:A (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    165749 7ua4:B (2.93) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165750 7ua4:B (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    165751 7ua4:C (2.93) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165752 7ua4:C (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    165753 7ua4:D (2.93) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165754 7ua4:D (2.93) BS03 CA ? GO:0001666 ... Q92736 35857850
    165755 7ua5:A (2.83) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165756 7ua5:B (2.83) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165757 7ua5:C (2.83) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165758 7ua5:D (2.83) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165759 7ua6:A (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    165760 7ua6:A (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    165761 7ua6:B (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    165762 7ua6:B (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 N/A
    165763 7ua9:A (3.59) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165764 7ua9:A (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    165765 7ua9:B (3.59) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165766 7ua9:B (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    165767 7ua9:C (3.59) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165768 7ua9:C (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    165769 7ua9:D (3.59) BS01 ZN ? GO:0001666 ... Q92736 35857850
    165770 7ua9:D (3.59) BS03 CA ? GO:0001666 ... Q92736 35857850
    165771 7uab:A (3.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165772 7uab:A (3.7) BS03 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165773 7uab:A (3.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165774 7uab:D (3.7) BS02 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165775 7uab:D (3.7) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165776 7uab:E (3.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165777 7uab:E (3.7) BS03 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165778 7uab:E (3.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165779 7uab:H (3.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165780 7uab:H (3.7) BS03 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165781 7uab:H (3.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165782 7uac:H (2.7) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165783 7uac:H (2.7) BS03 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165784 7uac:H (2.7) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165785 7uae:A (2.6) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165786 7uae:A (2.6) BS03 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165787 7uae:A (2.6) BS04 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165788 7uaf:A (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165789 7uaf:A (2.4) BS04 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165790 7uaf:A (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165791 7uaf:B (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165792 7uaf:B (2.4) BS04 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165793 7uaf:B (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165794 7uaf:C (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165795 7uaf:C (2.4) BS04 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165796 7uaf:C (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165797 7uaf:D (2.4) BS03 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165798 7uaf:D (2.4) BS04 ZN 3.4.24.18 GO:0004222 ... Q16819 36261433
    165799 7uaf:D (2.4) BS05 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    165800 7uai:B (2.8) BS02 CA 3.4.24.18 GO:0004222 ... Q16819 36261433
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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