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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    164201 7tcp:D (3.84) BS02 CA ? GO:0000086 ... P0DP23 35768468
    164202 7tcp:D (3.84) BS03 CA ? GO:0000086 ... P0DP23 35768468
    164203 7tcp:F (3.84) BS01 CA ? GO:0000086 ... P0DP23 35768468
    164204 7tcp:F (3.84) BS02 CA ? GO:0000086 ... P0DP23 35768468
    164205 7tcp:F (3.84) BS03 CA ? GO:0000086 ... P0DP23 35768468
    164206 7tcp:H (3.84) BS01 CA ? GO:0000086 ... P0DP23 35768468
    164207 7tcp:H (3.84) BS02 CA ? GO:0000086 ... P0DP23 35768468
    164208 7tcp:H (3.84) BS03 CA ? GO:0000086 ... P0DP23 35768468
    164209 7tcr:A (2.62) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164210 7tcr:A (2.62) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164211 7tcr:A (2.62) BS03 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164212 7tcr:B (2.62) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164213 7tcr:B (2.62) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164214 7tcr:B (2.62) BS03 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164215 7tct:A (2.501) BS01 CA ? GO:0007155 ... P08514 36113427
    164216 7tct:A (2.501) BS02 CA ? GO:0007155 ... P08514 36113427
    164217 7tct:A (2.501) BS03 CA ? GO:0007155 ... P08514 36113427
    164218 7tct:A (2.501) BS04 CA ? GO:0007155 ... P08514 36113427
    164219 7tct:B (2.501) BS01 MG ? N/A P05106 36113427
    164220 7tct:B (2.501) BS02 CA ? N/A P05106 36113427
    164221 7tct:B (2.501) BS03 CA ? N/A P05106 36113427
    164222 7tct:C (2.501) BS01 CA ? GO:0007155 ... P08514 36113427
    164223 7tct:C (2.501) BS02 CA ? GO:0007155 ... P08514 36113427
    164224 7tct:C (2.501) BS03 CA ? GO:0007155 ... P08514 36113427
    164225 7tct:C (2.501) BS04 CA ? GO:0007155 ... P08514 36113427
    164226 7tct:D (2.501) BS01 MG ? N/A P05106 36113427
    164227 7tct:D (2.501) BS02 CA ? N/A P05106 36113427
    164228 7tct:D (2.501) BS03 CA ? N/A P05106 36113427
    164229 7tcu:A (2.31) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164230 7tcu:A (2.31) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164231 7tcu:A (2.31) BS03 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164232 7tcu:B (2.31) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164233 7tcu:B (2.31) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164234 7tcu:B (2.31) BS03 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164235 7tcw:A (2.67) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164236 7tcw:A (2.67) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164237 7tcw:B (2.67) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164238 7tcw:B (2.67) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164239 7tcx:A (2.21) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164240 7tcx:A (2.21) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164241 7tcx:A (2.21) BS03 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164242 7tcx:B (2.21) BS01 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164243 7tcx:B (2.21) BS02 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164244 7tcx:B (2.21) BS03 FE ? GO:0046872 ... A0A2D2D5M1 35320042
    164245 7td5:A (2.994) BS03 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164246 7td5:A (2.994) BS04 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164247 7td5:A (2.994) BS05 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164248 7td5:A (2.994) BS06 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164249 7td5:A (2.994) BS07 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164250 7td5:A (2.994) BS08 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164251 7td5:A (2.994) BS09 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164252 7td5:A (2.994) BS10 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164253 7td5:F (2.994) BS03 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164254 7td5:F (2.994) BS04 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164255 7td5:F (2.994) BS05 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164256 7td5:F (2.994) BS06 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164257 7td5:F (2.994) BS07 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164258 7td5:F (2.994) BS08 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164259 7td5:F (2.994) BS09 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164260 7td5:F (2.994) BS10 ZN 2.1.1.356 GO:0000122 ... Q92800 36351927
    164261 7td8:A (2.6) BS01 CA ? GO:0007155 ... P08514 36113427
    164262 7td8:A (2.6) BS02 CA ? GO:0007155 ... P08514 36113427
    164263 7td8:A (2.6) BS03 CA ? GO:0007155 ... P08514 36113427
    164264 7td8:A (2.6) BS04 CA ? GO:0007155 ... P08514 36113427
    164265 7td8:B (2.6) BS01 MG ? N/A P05106 36113427
    164266 7td8:B (2.6) BS02 CA ? N/A P05106 36113427
    164267 7td8:B (2.6) BS03 CA ? N/A P05106 36113427
    164268 7td8:C (2.6) BS01 CA ? GO:0007155 ... P08514 36113427
    164269 7td8:C (2.6) BS02 CA ? GO:0007155 ... P08514 36113427
    164270 7td8:C (2.6) BS03 CA ? GO:0007155 ... P08514 36113427
    164271 7td8:C (2.6) BS04 CA ? GO:0007155 ... P08514 36113427
    164272 7td8:D (2.6) BS01 MG ? N/A P05106 36113427
    164273 7td8:D (2.6) BS02 CA ? N/A P05106 36113427
    164274 7td8:D (2.6) BS03 CA ? N/A P05106 36113427
    164275 7tdg:A (3.8) BS01 ZN ? GO:0003151 ... P11716 35257661
    164276 7tdg:A (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    164277 7tdg:B (3.8) BS01 ZN ? GO:0003151 ... P11716 35257661
    164278 7tdg:B (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    164279 7tdg:C (3.8) BS01 ZN ? GO:0003151 ... P11716 35257661
    164280 7tdg:C (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    164281 7tdg:D (3.8) BS01 ZN ? GO:0003151 ... P11716 35257661
    164282 7tdg:D (3.8) BS02 CA ? GO:0003151 ... P11716 35257661
    164283 7tdh:A (4.0) BS01 ZN ? GO:0003151 ... P11716 35257661
    164284 7tdh:A (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    164285 7tdh:B (4.0) BS01 ZN ? GO:0003151 ... P11716 35257661
    164286 7tdh:B (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    164287 7tdh:C (4.0) BS01 ZN ? GO:0003151 ... P11716 35257661
    164288 7tdh:C (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    164289 7tdh:D (4.0) BS01 ZN ? GO:0003151 ... P11716 35257661
    164290 7tdh:D (4.0) BS02 CA ? GO:0003151 ... P11716 35257661
    164291 7tdi:A (3.3) BS01 ZN ? GO:0003151 ... P11716 35257661
    164292 7tdi:A (3.3) BS02 CA ? GO:0003151 ... P11716 35257661
    164293 7tdi:B (3.3) BS02 ZN ? GO:0003151 ... P11716 35257661
    164294 7tdi:B (3.3) BS03 CA ? GO:0003151 ... P11716 35257661
    164295 7tdi:C (3.3) BS02 ZN ? GO:0003151 ... P11716 35257661
    164296 7tdi:C (3.3) BS03 CA ? GO:0003151 ... P11716 35257661
    164297 7tdi:D (3.3) BS02 ZN ? GO:0003151 ... P11716 35257661
    164298 7tdi:D (3.3) BS03 CA ? GO:0003151 ... P11716 35257661
    164299 7tdj:A (3.7) BS02 ZN ? GO:0003151 ... P11716 35257661
    164300 7tdj:A (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    164301 7tdj:B (3.7) BS02 ZN ? GO:0003151 ... P11716 35257661
    164302 7tdj:B (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    164303 7tdj:C (3.7) BS02 ZN ? GO:0003151 ... P11716 35257661
    164304 7tdj:C (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    164305 7tdj:D (3.7) BS02 ZN ? GO:0003151 ... P11716 35257661
    164306 7tdj:D (3.7) BS03 CA ? GO:0003151 ... P11716 35257661
    164307 7tdk:A (3.8) BS02 ZN ? GO:0003151 ... P11716 35257661
    164308 7tdk:A (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    164309 7tdk:B (3.8) BS02 ZN ? GO:0003151 ... P11716 35257661
    164310 7tdk:B (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    164311 7tdk:C (3.8) BS02 ZN ? GO:0003151 ... P11716 35257661
    164312 7tdk:C (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    164313 7tdk:D (3.8) BS02 ZN ? GO:0003151 ... P11716 35257661
    164314 7tdk:D (3.8) BS03 CA ? GO:0003151 ... P11716 35257661
    164315 7tdp:A (1.98) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164316 7tdp:A (1.98) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164317 7tdp:A (1.98) BS05 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164318 7tdp:B (1.98) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164319 7tdp:B (1.98) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164320 7tdp:B (1.98) BS05 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164321 7tdp:C (1.98) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164322 7tdp:C (1.98) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164323 7tdp:C (1.98) BS05 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164324 7tdv:A (2.92) BS03 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164325 7tdv:A (2.92) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164326 7tdv:B (2.92) BS03 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164327 7tdv:B (2.92) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164328 7tdv:B (2.92) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164329 7tdv:B (2.92) BS06 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164330 7tdv:C (2.92) BS03 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164331 7tdv:C (2.92) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164332 7tdv:C (2.92) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164333 7tdv:D (2.92) BS03 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164334 7tdv:D (2.92) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164335 7tdv:E (2.92) BS03 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164336 7tdv:E (2.92) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164337 7tdv:H (2.92) BS03 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164338 7tdv:H (2.92) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164339 7te5:A (1.85) BS01 MG ? GO:0046872 ... A0A2U2H063 N/A
    164340 7te5:B (1.85) BS01 MG ? GO:0046872 ... A0A2U2H063 N/A
    164341 7tea:C (2.35) BS03 CA ? GO:0003677 ... Q2FYY7 35778410
    164342 7tep:A (2.7) BS02 CU ? GO:0005506 ... P0ABE7 35642584
    164343 7tep:B (2.7) BS02 CU ? GO:0005506 ... P0ABE7 35642584
    164344 7tep:C (2.7) BS01 CU ? GO:0005506 ... P0ABE7 35642584
    164345 7tep:D (2.7) BS01 CU ? GO:0005506 ... P0ABE7 35642584
    164346 7tf6:A (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164347 7tf6:A (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164348 7tf6:B (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164349 7tf6:B (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164350 7tf6:C (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164351 7tf6:C (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164352 7tf6:F (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164353 7tf6:F (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164354 7tf6:G (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164355 7tf6:G (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164356 7tf6:H (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164357 7tf6:H (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164358 7tf6:L (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164359 7tf6:L (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164360 7tf6:N (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164361 7tf6:N (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164362 7tf6:O (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164363 7tf6:O (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164364 7tf6:R (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164365 7tf6:R (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164366 7tf6:S (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164367 7tf6:S (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164368 7tf6:T (2.15) BS04 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164369 7tf6:T (2.15) BS05 MG 6.3.1.2 GO:0003824 ... E3VXC2 35778410
    164370 7tf9:A (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164371 7tf9:A (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164372 7tf9:B (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164373 7tf9:B (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164374 7tf9:C (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164375 7tf9:C (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164376 7tf9:F (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164377 7tf9:F (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164378 7tf9:G (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164379 7tf9:G (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164380 7tf9:H (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164381 7tf9:H (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164382 7tf9:I (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164383 7tf9:I (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164384 7tf9:N (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164385 7tf9:N (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164386 7tf9:O (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164387 7tf9:O (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164388 7tf9:P (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164389 7tf9:P (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164390 7tf9:Q (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164391 7tf9:Q (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164392 7tf9:R (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164393 7tf9:R (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164394 7tf9:S (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164395 7tf9:S (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164396 7tf9:T (2.61) BS02 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164397 7tf9:T (2.61) BS03 MG 6.3.1.2 GO:0003824 ... A0A5D5GA79 35778410
    164398 7tfa:B (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164399 7tfa:B (2.07) BS04 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    164400 7tfa:E (2.07) BS03 MG 6.3.1.2 GO:0003824 ... A0A0F0G8G2 35778410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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