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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163801 7syk:b (4.2) BS02 ZN ? GO:0003735 ... G1TFE8 35822879
    163802 7syk:g (4.2) BS02 ZN ? GO:0003735 ... G1SK22 35822879
    163803 7syl:b (4.5) BS02 ZN ? GO:0003735 ... G1TFE8 35822879
    163804 7syl:g (4.5) BS02 ZN ? GO:0003735 ... G1SK22 35822879
    163805 7sym:b (4.8) BS02 ZN ? GO:0003735 ... G1TFE8 N/A
    163806 7syn:b (4.0) BS02 ZN ? GO:0003735 ... G1TFE8 N/A
    163807 7syo:b (4.6) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163808 7syo:g (4.6) BS02 ZN ? GO:0003735 ... G1SK22 35822879
    163809 7syp:b (4.0) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163810 7syp:g (4.0) BS02 ZN ? GO:0003735 ... G1SK22 35822879
    163811 7syq:b (3.8) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163812 7syq:g (3.8) BS02 ZN ? GO:0003735 ... G1SK22 35822879
    163813 7syr:b (3.6) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163814 7sys:b (3.5) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163815 7syu:b (4.6) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163816 7syv:b (3.9) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163817 7syv:g (3.9) BS02 ZN ? GO:0003735 ... G1SK22 35822879
    163818 7syw:b (3.7) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163819 7syw:x (3.7) BS04 MG ? GO:0003924 ... G1TRL5 35822879
    163820 7syx:b (3.7) BS03 ZN ? GO:0003735 ... G1TFE8 35822879
    163821 7syx:x (3.7) BS03 MG ? GO:0003924 ... G1TRL5 35822879
    163822 7sz8:A (2.337) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    163823 7sz8:A (2.337) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    163824 7sz8:A (2.337) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    163825 7sz8:A (2.337) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    163826 7sz8:A (2.337) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    163827 7sz8:A (2.337) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    163828 7sz8:A (2.337) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    163829 7sz8:A (2.337) BS08 CA ? GO:0005509 ... Q9NYQ6 N/A
    163830 7sz8:B (2.337) BS01 CA ? GO:0005509 ... Q9NYQ6 N/A
    163831 7sz8:B (2.337) BS02 CA ? GO:0005509 ... Q9NYQ6 N/A
    163832 7sz8:B (2.337) BS03 CA ? GO:0005509 ... Q9NYQ6 N/A
    163833 7sz8:B (2.337) BS04 CA ? GO:0005509 ... Q9NYQ6 N/A
    163834 7sz8:B (2.337) BS05 CA ? GO:0005509 ... Q9NYQ6 N/A
    163835 7sz8:B (2.337) BS06 CA ? GO:0005509 ... Q9NYQ6 N/A
    163836 7sz8:B (2.337) BS07 CA ? GO:0005509 ... Q9NYQ6 N/A
    163837 7sz8:B (2.337) BS08 CA ? GO:0005509 ... Q9NYQ6 N/A
    163838 7sze:A (1.74) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    163839 7sze:B (1.74) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    163840 7sze:C (1.74) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    163841 7szf:A (1.79) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    163842 7szf:B (1.79) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    163843 7szf:C (1.79) BS03 FE ? GO:0005506 ... C3RVP5 35017498
    163844 7szg:A (2.69) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    163845 7szg:B (2.69) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    163846 7szg:C (2.69) BS02 FE ? GO:0005506 ... C3RVP5 35017498
    163847 7szh:A (1.79) BS03 FE ? GO:0005506 ... C3RVQ0 35017498
    163848 7szh:B (1.79) BS03 FE ? GO:0005506 ... C3RVQ0 35017498
    163849 7szh:C (1.79) BS03 FE ? GO:0005506 ... C3RVQ0 35017498
    163850 7szj:D (3.11) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 35772744
    163851 7szj:D (3.11) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35772744
    163852 7szj:D (3.11) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35772744
    163853 7szk:D (2.94) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 35772744
    163854 7szk:D (2.94) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35772744
    163855 7szk:D (2.94) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 35772744
    163856 7szx:B (3.5) BS01 MG ? N/A A3F778 35435730
    163857 7t02:A (3.8) BS03 ZN 3.6.4.- GO:0003677 ... J9VI03 35202575
    163858 7t02:A (3.8) BS04 ZN 3.6.4.- GO:0003677 ... J9VI03 35202575
    163859 7t02:A (3.8) BS05 ZN 3.6.4.- GO:0003677 ... J9VI03 35202575
    163860 7t02:A (3.8) BS06 ZN 3.6.4.- GO:0003677 ... J9VI03 35202575
    163861 7t02:A (3.8) BS07 ZN 3.6.4.- GO:0003677 ... J9VI03 35202575
    163862 7t08:B (1.803) BS01 ZN 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    163863 7t09:B (1.984) BS01 ZN 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    163864 7t0a:B (2.099) BS01 ZN 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    163865 7t0b:B (2.026) BS01 ZN 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    163866 7t0c:B (1.903) BS01 ZN 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    163867 7t0d:B (1.906) BS03 ZN 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    163868 7t0e:B (2.223) BS01 ZN 2.5.1.58 GO:0003824 ... T2BPA1 36218371
    163869 7t0y:A (1.8) BS01 MN 3.1.3.16 GO:0016787 ... P62136 36450254
    163870 7t0y:A (1.8) BS02 MN 3.1.3.16 GO:0016787 ... P62136 36450254
    163871 7t0y:C (1.8) BS01 MN 3.1.3.16 GO:0016787 ... P62136 36450254
    163872 7t0y:C (1.8) BS02 MN 3.1.3.16 GO:0016787 ... P62136 36450254
    163873 7t18:A (1.7) BS03 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163874 7t18:A (1.7) BS04 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163875 7t18:A (1.7) BS05 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163876 7t19:A (2.01) BS03 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163877 7t1a:A (1.81) BS03 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163878 7t1a:A (1.81) BS05 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163879 7t1a:A (1.81) BS06 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163880 7t1b:A (1.75) BS04 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163881 7t1b:A (1.75) BS05 CA 2.7.7.- GO:0003684 ... P12689 35610266
    163882 7t1d:A (1.75) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 37317966
    163883 7t1d:B (1.75) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 37317966
    163884 7t1f:C (2.2) BS02 MG 3.6.5.2 GO:0003924 ... P01116 37681415
    163885 7t1j:A (1.96) BS02 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163886 7t1j:B (1.96) BS03 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163887 7t1j:C (1.96) BS02 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163888 7t1j:D (1.96) BS03 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163889 7t1j:E (1.96) BS02 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163890 7t1j:F (1.96) BS03 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163891 7t1j:G (1.96) BS02 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163892 7t1j:H (1.96) BS03 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163893 7t1j:I (1.96) BS02 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163894 7t1j:J (1.96) BS03 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163895 7t1j:K (1.96) BS02 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163896 7t1j:L (1.96) BS03 MG 4.1.1.39 GO:0000287 ... A0A0F2R9T6 36026446
    163897 7t1q:A (2.25) BS01 ZN 3.5.1.18 GO:0008270 ... A3M8H2 N/A
    163898 7t1q:A (2.25) BS02 ZN 3.5.1.18 GO:0008270 ... A3M8H2 N/A
    163899 7t1q:B (2.25) BS01 ZN 3.5.1.18 GO:0008270 ... A3M8H2 N/A
    163900 7t1q:B (2.25) BS02 ZN 3.5.1.18 GO:0008270 ... A3M8H2 N/A
    163901 7t1u:A (2.65) BS02 ZN 2.7.10.2 N/A P12931 35613471
    163902 7t1u:B (2.65) BS02 ZN 2.7.10.2 N/A P12931 35613471
    163903 7t20:C (4.7) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163904 7t20:D (4.7) BS02 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163905 7t20:E (4.7) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163906 7t20:F (4.7) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163907 7t21:B (5.4) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163908 7t21:D (5.4) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163909 7t21:E (5.4) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163910 7t21:F (5.4) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163911 7t22:B (4.2) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163912 7t22:C (4.2) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163913 7t22:D (4.2) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163914 7t22:E (4.2) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163915 7t22:F (4.2) BS03 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163916 7t23:B (4.2) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163917 7t23:C (4.2) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163918 7t23:D (4.2) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163919 7t23:E (4.2) BS04 MG 3.6.4.12 GO:0003677 ... P0ACB0 N/A
    163920 7t28:A (2.68) BS01 ZN ? GO:0016787 ... A0A345MJY6 35395152
    163921 7t28:A (2.68) BS02 ZN ? GO:0016787 ... A0A345MJY6 35395152
    163922 7t2q:A (1.95) BS01 CA ? GO:0000086 ... P0DP23 36371402
    163923 7t2q:A (1.95) BS02 CA ? GO:0000086 ... P0DP23 36371402
    163924 7t2q:A (1.95) BS03 CA ? GO:0000086 ... P0DP23 36371402
    163925 7t2q:A (1.95) BS04 CA ? GO:0000086 ... P0DP23 36371402
    163926 7t2q:A (1.95) BS05 MG ? GO:0000086 ... P0DP23 36371402
    163927 7t2q:A (1.95) BS06 ZN ? GO:0000086 ... P0DP23 36371402
    163928 7t3p:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163929 7t3p:B (3.2) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163930 7t3p:C (3.2) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163931 7t3p:D (3.2) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163932 7t3q:A (3.3) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163933 7t3q:B (3.3) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163934 7t3q:C (3.3) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163935 7t3q:D (3.3) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163936 7t3r:A (3.4) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163937 7t3r:B (3.4) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163938 7t3r:C (3.4) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163939 7t3r:D (3.4) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163940 7t3s:A (2.966) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    163941 7t3s:A (2.966) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    163942 7t3s:A (2.966) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    163943 7t3t:A (3.8) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163944 7t3t:A (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    163945 7t3t:B (3.8) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163946 7t3t:B (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    163947 7t3t:C (3.8) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163948 7t3t:C (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    163949 7t3t:D (3.8) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163950 7t3t:D (3.8) BS04 CA ? GO:0000822 ... Q14573 35301323
    163951 7t3u:A (3.7) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163952 7t3u:A (3.7) BS03 CA ? GO:0000822 ... Q14573 35301323
    163953 7t3u:B (3.7) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163954 7t3u:B (3.7) BS03 CA ? GO:0000822 ... Q14573 35301323
    163955 7t3u:C (3.7) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163956 7t3u:C (3.7) BS03 CA ? GO:0000822 ... Q14573 35301323
    163957 7t3u:D (3.7) BS01 ZN ? GO:0000822 ... Q14573 35301323
    163958 7t3u:D (3.7) BS04 CA ? GO:0000822 ... Q14573 35301323
    163959 7t3v:A (2.3) BS02 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163960 7t3v:A (2.3) BS03 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163961 7t3v:B (2.3) BS02 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163962 7t3v:B (2.3) BS03 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163963 7t3v:C (2.3) BS02 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163964 7t3v:C (2.3) BS03 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163965 7t3v:D (2.3) BS02 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163966 7t3v:D (2.3) BS03 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163967 7t3v:E (2.3) BS02 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163968 7t3v:E (2.3) BS03 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163969 7t3v:F (2.3) BS02 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163970 7t3v:F (2.3) BS03 ZN 3.4.11.1
    3.4.13.-
    GO:0005737 ... Q8IL11 35691342
    163971 7t4o:A (3.65) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163972 7t4o:A (3.65) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163973 7t4o:E (3.65) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163974 7t4o:E (3.65) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163975 7t4o:I (3.65) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163976 7t4p:A (3.62) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163977 7t4p:A (3.62) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163978 7t4p:C (3.62) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163979 7t4p:E (3.62) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163980 7t4p:E (3.62) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163981 7t4p:G (3.62) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163982 7t4p:I (3.62) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163983 7t4p:I (3.62) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163984 7t4p:K (3.62) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163985 7t4s:F (3.1) BS01 CA ? GO:0001525 ... O60462 35275719
    163986 7t55:A (4.1) BS03 MG ? GO:0005515 ... A3DCU1 35074919
    163987 7t56:B (3.7) BS03 MG ? GO:0005515 ... A3DCU1 35074919
    163988 7t5c:A (1.5) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    163989 7t5c:B (1.5) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    163990 7t5d:A (2.4) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    163991 7t5d:B (2.4) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    163992 7t5e:A (1.9) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    163993 7t5e:B (1.9) BS01 CU ? GO:0004497 ... Q8WZQ2 36507176
    163994 7t5f:A (2.6) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 34990480
    163995 7t5f:D (2.6) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 34990480
    163996 7t5m:A (1.67) BS02 MG ? N/A Q861F7 35379743
    163997 7t5m:C (1.67) BS02 MG ? N/A Q861F7 35379743
    163998 7t5t:A (1.35) BS01 ZN ? GO:0046872 ... A0A290ZVI6 36156805
    163999 7t63:A (2.0) BS01 FE2 N/A GO:0006631 ... N/A 35867834
    164000 7t63:A (2.0) BS02 FE2 N/A GO:0006631 ... N/A 35867834

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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