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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163401 7sfd:A (2.09) BS05 ZN 2.1.1.37 GO:0003682 ... P26358 35395178
    163402 7sfe:A (2.55) BS03 ZN 2.1.1.37 GO:0003682 ... P26358 35395178
    163403 7sfe:A (2.55) BS04 ZN 2.1.1.37 GO:0003682 ... P26358 35395178
    163404 7sff:A (2.05) BS03 ZN 2.1.1.37 GO:0003682 ... P26358 35395178
    163405 7sff:A (2.05) BS04 ZN 2.1.1.37 GO:0003682 ... P26358 35395178
    163406 7sfg:A (2.43) BS03 ZN 2.1.1.37 GO:0003682 ... P26358 35395178
    163407 7sfg:A (2.43) BS04 ZN 2.1.1.37 GO:0003682 ... P26358 35395178
    163408 7sfr:1 (2.6) BS02 ZN ? GO:0003735 ... P9WH95 36827973
    163409 7sfr:4 (2.6) BS02 ZN ? GO:0003735 ... P9WH89 36827973
    163410 7sfr:C (2.6) BS02 MG ? GO:0002181 ... P9WHA5 36827973
    163411 7sfr:C (2.6) BS03 MG ? GO:0002181 ... P9WHA5 36827973
    163412 7sfr:X (2.6) BS02 ZN ? GO:0003735 ... P0DV54 36827973
    163413 7sfr:n (2.6) BS02 ZN ? GO:0003735 ... P9WH57 36827973
    163414 7sfr:r (2.6) BS02 ZN ? GO:0003735 ... P9WH49 36827973
    163415 7sfz:A (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163416 7sfz:B (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163417 7sfz:C (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163418 7sfz:D (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163419 7sfz:E (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163420 7sfz:F (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163421 7sfz:G (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163422 7sfz:H (3.002) BS01 ZN ? N/A Q9NYP9 N/A
    163423 7sg1:A (3.1) BS02 CA ? GO:0006955 ... P01909 35065967
    163424 7sg1:E (3.1) BS02 CA N/A N/A N/A 35065967
    163425 7sg2:B (3.1) BS02 CA ? GO:0006955 ... Q5Y7D3 35065967
    163426 7sg2:E (3.1) BS02 CA N/A N/A N/A 35065967
    163427 7sgc:C (2.7) BS05 MG ? GO:0003677 ... P03856 N/A
    163428 7sgg:A (2.1) BS02 ZN 3.5.1.48
    3.5.1.62    		 GO:0005634 ... F1QCV2 36200994
    163429 7sgi:A (2.15) BS02 ZN 3.5.1.48
    3.5.1.62    		 GO:0005634 ... F1QCV2 36200994
    163430 7sgj:A (2.15) BS02 ZN 3.5.1.48
    3.5.1.62    		 GO:0005634 ... F1QCV2 36200994
    163431 7sgk:A (2.2) BS02 ZN 3.5.1.48
    3.5.1.62    		 GO:0005634 ... F1QCV2 36200994
    163432 7sgl:A (3.0) BS02 MG 2.7.11.1 GO:0000460 ... P78527 34936881
    163433 7sgl:D (3.0) BS02 MG 3.1.-.- GO:0000014 ... Q96SD1 34936881
    163434 7sgl:D (3.0) BS03 MG 3.1.-.- GO:0000014 ... Q96SD1 34936881
    163435 7sgl:D (3.0) BS04 ZN 3.1.-.- GO:0000014 ... Q96SD1 34936881
    163436 7sgs:B (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 35050657
    163437 7sgs:D (3.3) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 35050657
    163438 7sgu:A (1.79) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    163439 7sgw:A (1.95) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    163440 7sgx:A (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    163441 7sgx:A (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    163442 7sgx:A (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    163443 7sgx:A (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    163444 7sgx:A (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    163445 7sgx:A (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    163446 7sgx:A (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    163447 7sgx:B (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    163448 7sgx:B (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    163449 7sgx:B (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    163450 7sgx:B (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    163451 7sgx:B (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    163452 7sgx:B (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    163453 7sgx:B (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    163454 7sgx:B (3.13) BS08 CA N/A GO:0005509 ... N/A 36911992
    163455 7sgx:C (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    163456 7sgx:C (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    163457 7sgx:C (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    163458 7sgx:C (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    163459 7sgx:C (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    163460 7sgx:C (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    163461 7sgx:C (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    163462 7sgx:C (3.13) BS08 CA N/A GO:0005509 ... N/A 36911992
    163463 7sgx:D (3.13) BS01 CA N/A GO:0005509 ... N/A 36911992
    163464 7sgx:D (3.13) BS02 CA N/A GO:0005509 ... N/A 36911992
    163465 7sgx:D (3.13) BS03 CA N/A GO:0005509 ... N/A 36911992
    163466 7sgx:D (3.13) BS04 CA N/A GO:0005509 ... N/A 36911992
    163467 7sgx:D (3.13) BS05 CA N/A GO:0005509 ... N/A 36911992
    163468 7sgx:D (3.13) BS06 CA N/A GO:0005509 ... N/A 36911992
    163469 7sgx:D (3.13) BS07 CA N/A GO:0005509 ... N/A 36911992
    163470 7sgz:A (3.17) BS04 MG ? GO:0000077 ... P32641 35314830
    163471 7sgz:C (3.17) BS02 MG ? GO:0000077 ... P38629 35314830
    163472 7sh0:A (3.2) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 35904863
    163473 7sh0:B (3.2) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 35904863
    163474 7sh1:A (2.04) BS03 ZN ? GO:0003677 ... Q0X0A9 37198233
    163475 7sh1:A (2.04) BS04 ZN ? GO:0003677 ... Q0X0A9 37198233
    163476 7sh1:B (2.04) BS03 ZN ? GO:0003677 ... Q0X0A9 37198233
    163477 7sh1:B (2.04) BS04 ZN ? GO:0003677 ... Q0X0A9 37198233
    163478 7sh2:C (3.23) BS02 MG ? GO:0000077 ... P38629 35314830
    163479 7shg:A (2.5) BS01 MG ? N/A L0EJI9 35393575
    163480 7shg:B (2.5) BS01 MG ? N/A L0EJI9 35393575
    163481 7shh:A (1.9) BS01 ZN ? GO:0046872 ... A4TVL0 35300081
    163482 7shh:B (1.9) BS01 ZN ? GO:0046872 ... A4TVL0 35300081
    163483 7shh:C (1.9) BS01 ZN ? GO:0046872 ... A4TVL0 35300081
    163484 7shk:L (3.1) BS01 ZN ? N/A A4QNS4 34850944
    163485 7shk:R (3.1) BS01 ZN ? GO:0008270 ... A0A1L8GNJ6 34850944
    163486 7shk:R (3.1) BS02 ZN ? GO:0008270 ... A0A1L8GNJ6 34850944
    163487 7shk:R (3.1) BS03 ZN ? GO:0008270 ... A0A1L8GNJ6 34850944
    163488 7shl:L (3.5) BS01 ZN ? N/A A4QNS4 34850944
    163489 7shq:A (2.34) BS01 ZN 2.7.11.20 GO:0004674 ... O00418 35857468
    163490 7shq:B (2.34) BS01 CA ? GO:0000086 ... P0DP23 35857468
    163491 7shq:B (2.34) BS02 CA ? GO:0000086 ... P0DP23 35857468
    163492 7shq:B (2.34) BS03 MG ? GO:0000086 ... P0DP23 35857468
    163493 7shq:B (2.34) BS04 MG ? GO:0000086 ... P0DP23 35857468
    163494 7si3:A (3.19) BS01 MG 7.2.2.8 GO:0000166 ... A0A6I8R0A5 35245129
    163495 7si6:A (3.32) BS01 MG 7.2.2.8 GO:0000166 ... A0A6I8R0A5 35245129
    163496 7si7:A (3.49) BS01 MG 7.2.2.8 GO:0000166 ... A0A6I8R0A5 35245129
    163497 7sib:A (1.78) BS01 CA ? N/A Q99972 36579626
    163498 7sid:A (2.53) BS03 MG 2.7.11.1 GO:0000077 ... Q13315 35076389
    163499 7sid:C (2.53) BS03 MG 2.7.11.1 GO:0000077 ... Q13315 35076389
    163500 7sie:A (1.3) BS01 CA ? N/A Q5HKE8 36702253
    163501 7sij:A (1.54) BS01 CA ? N/A Q99972 36579626
    163502 7sil:A (2.7) BS02 CA ? GO:0004930 ... P41180 34916296
    163503 7sil:A (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    163504 7sil:A (2.7) BS04 CA ? GO:0004930 ... P41180 34916296
    163505 7sil:B (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    163506 7sil:B (2.7) BS04 CA ? GO:0004930 ... P41180 34916296
    163507 7sil:B (2.7) BS05 CA ? GO:0004930 ... P41180 34916296
    163508 7sim:A (2.7) BS02 CA ? GO:0004930 ... P41180 34916296
    163509 7sim:A (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    163510 7sim:B (2.7) BS03 CA ? GO:0004930 ... P41180 34916296
    163511 7sim:B (2.7) BS04 CA ? GO:0004930 ... P41180 34916296
    163512 7sis:A (1.9) BS02 ZN ? N/A Q861F7 N/A
    163513 7siy:A (1.48) BS02 MG 2.3.2.27 GO:0001784 ... P22681 N/A
    163514 7sj2:A (2.3) BS01 CA ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    163515 7sj2:A (2.3) BS02 MG ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    163516 7sj2:B (2.3) BS01 CA ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    163517 7sj2:B (2.3) BS02 MG ?
    2.7.8.17    		 GO:0005509 ... Q54MP1
    Q5RGJ8    		 35939698
    163518 7sj9:J (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 34996871
    163519 7sja:A (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 34996871
    163520 7sja:C (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 34996871
    163521 7sja:E (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 34996871
    163522 7sja:J (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 34996871
    163523 7sja:K (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 34996871
    163524 7sja:L (3.8) BS02 MG 3.6.5.- GO:0000226 ... P68363 34996871
    163525 7sjk:A (1.208) BS01 CA ? N/A P80544 36702253
    163526 7sjk:B (1.208) BS01 CA ? N/A P80544 36702253
    163527 7sjr:A (3.8) BS02 MG 5.6.2.4 GO:0000725 ... A0QTR9 34967418
    163528 7sjt:A (1.54) BS01 CA ? N/A Q99972 36579626
    163529 7sju:A (1.391) BS01 CA ? N/A Q99972 36579626
    163530 7sjv:A (1.39) BS01 CA ? N/A Q99972 36579626
    163531 7sjw:A (1.38) BS01 CA ? N/A Q99972 36579626
    163532 7skd:A (1.712) BS01 CA ? N/A Q99972 36579626
    163533 7ske:A (1.24) BS01 CA ? N/A Q99972 36579626
    163534 7skf:A (1.282) BS01 CA ? N/A Q99972 36579626
    163535 7skg:A (1.33) BS01 CA ? N/A Q99972 36579626
    163536 7skh:A (2.265) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    163537 7skh:A (2.265) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    163538 7skh:A (2.265) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    163539 7skh:B (2.265) BS01 CA ? GO:0005509 ... Q99PF4 N/A
    163540 7skh:B (2.265) BS02 CA ? GO:0005509 ... Q99PF4 N/A
    163541 7skh:B (2.265) BS03 CA ? GO:0005509 ... Q99PF4 N/A
    163542 7skl:A (1.6) BS01 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163543 7skl:A (1.6) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163544 7skl:A (1.6) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163545 7skl:A (1.6) BS04 ZN 3.4.24.29 GO:0004222 ... P81177 N/A
    163546 7skl:C (1.6) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163547 7skl:C (1.6) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163548 7skl:C (1.6) BS04 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163549 7skl:C (1.6) BS05 ZN 3.4.24.29 GO:0004222 ... P81177 N/A
    163550 7skm:A (1.85) BS01 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163551 7skm:A (1.85) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163552 7skm:A (1.85) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163553 7skm:A (1.85) BS04 ZN 3.4.24.29 GO:0004222 ... P81177 N/A
    163554 7skm:C (1.85) BS02 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163555 7skm:C (1.85) BS03 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163556 7skm:C (1.85) BS04 CA 3.4.24.29 GO:0004222 ... P81177 N/A
    163557 7skm:C (1.85) BS05 ZN 3.4.24.29 GO:0004222 ... P81177 N/A
    163558 7skq:A (3.16) BS01 ZN 3.4.19.12 GO:0006508 ... Q0QDZ2 35199517
    163559 7skq:A (3.16) BS02 ZN 3.4.19.12 GO:0006508 ... Q0QDZ2 35199517
    163560 7skq:B (3.16) BS02 ZN 3.4.19.12 GO:0006508 ... Q0QDZ2 35199517
    163561 7skq:B (3.16) BS03 ZN 3.4.19.12 GO:0006508 ... Q0QDZ2 35199517
    163562 7skr:A (2.89) BS02 ZN 3.4.19.12 GO:0006508 ... Q0QDZ2 35199517
    163563 7skx:C (1.5) BS02 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    163564 7skx:C (1.5) BS03 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    163565 7skx:C (1.5) BS04 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    163566 7skx:C (1.5) BS05 CA 3.4.21.64 GO:0004252 ... P06873 35637302
    163567 7smg:A (2.3) BS01 MG N/A N/A N/A 36989297
    163568 7smg:B (2.3) BS01 MG N/A N/A N/A 36989297
    163569 7smg:C (2.3) BS01 MG N/A N/A N/A 36989297
    163570 7smg:D (2.3) BS01 MG N/A N/A N/A 36989297
    163571 7smh:A (1.65) BS01 CA ? N/A Q2G2B2 36702253
    163572 7smh:B (1.65) BS01 CA ? N/A Q2G2B2 36702253
    163573 7smh:C (1.65) BS01 CA ? N/A Q2G2B2 36702253
    163574 7smh:D (1.65) BS01 CA ? N/A Q2G2B2 36702253
    163575 7sn0:A (3.08) BS02 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 34855508
    163576 7sn0:B (3.08) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 34855508
    163577 7sn8:K (2.74) BS01 ZN 3.1.27.- GO:0004521 ... Q9VAH9 36180473
    163578 7sn8:K (2.74) BS02 ZN 3.1.27.- GO:0004521 ... Q9VAH9 36180473
    163579 7snb:A (1.11) BS03 MG ? GO:0004371 ... Q2FZ58 N/A
    163580 7snb:A (1.11) BS04 MG ? GO:0004371 ... Q2FZ58 N/A
    163581 7snz:A (2.368) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 35237658
    163582 7snz:A (2.368) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 35237658
    163583 7snz:B (2.368) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003964 ... P03366 35237658
    163584 7so3:A (2.767) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 35237658
    163585 7so6:A (2.79) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 35237658
    163586 7soi:A (2.0) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    163587 7soi:B (2.0) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    163588 7soj:A (1.85) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    163589 7soj:B (1.85) BS01 FE 1.13.11.12 GO:0005506 ... P08170 36867685
    163590 7som:BH (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    163591 7som:CB (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    163592 7som:HD (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    163593 7som:HH (3.7) BS01 MG 3.6.5.- GO:0005200 ... P09204 35578023
    163594 7som:JJ (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    163595 7som:LD (3.7) BS02 MG 3.6.5.- GO:0005200 ... P09204 35578023
    163596 7soz:C (3.14) BS03 MG ? GO:0003677 ... P03856 37407546
    163597 7sp0:B (1.83) BS01 ZN ? GO:0003676 ... P23246 36168806
    163598 7sp2:A (2.75) BS01 CA ? N/A P80544 N/A
    163599 7sp3:A (1.6) BS02 MG 3.6.1.- GO:0000287 ... P0A776 35131855
    163600 7sp3:A (1.6) BS03 MG 3.6.1.- GO:0000287 ... P0A776 35131855
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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