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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    163001 7rwj:B (3.5) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    163002 7rwk:A (2.39) BS01 ZN ? GO:0046872 ... V4NUN3 34737303
    163003 7rwk:A (2.39) BS02 MG ? GO:0046872 ... V4NUN3 34737303
    163004 7rwk:B (2.39) BS01 ZN ? GO:0046872 ... V4NUN3 34737303
    163005 7rwk:B (2.39) BS02 MG ? GO:0046872 ... V4NUN3 34737303
    163006 7rwm:A (3.4) BS01 ZN ? GO:0046872 ... A0A1E7G0A2 34737303
    163007 7rwm:B (3.4) BS01 ZN ? GO:0046872 ... A0A1E7G0A2 34737303
    163008 7rwm:C (3.4) BS01 ZN ? GO:0046872 ... A0A1E7G0A2 34737303
    163009 7rwm:D (3.4) BS01 ZN ? GO:0046872 ... A0A1E7G0A2 34737303
    163010 7rww:A (1.7) BS01 ZN ? GO:0005506 ... P0ABE7 35642584
    163011 7rww:A (1.7) BS02 ZN ? GO:0005506 ... P0ABE7 35642584
    163012 7rww:B (1.7) BS02 ZN ? GO:0005506 ... P0ABE7 35642584
    163013 7rwx:A (1.6) BS01 CA ? GO:0005506 ... P0ABE7 35642584
    163014 7rwx:B (1.6) BS01 ZN ? GO:0005506 ... P0ABE7 35642584
    163015 7rwy:C (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    163016 7rwy:C (2.2) BS02 FE ? GO:0005506 ... P0ABE7 35642584
    163017 7rwy:D (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    163018 7rwy:D (2.2) BS02 FE ? GO:0005506 ... P0ABE7 35642584
    163019 7rwy:E (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    163020 7rwy:F (2.2) BS01 FE ? GO:0005506 ... P0ABE7 35642584
    163021 7rx2:A (2.7) BS04 CA ? GO:0005245 ... Q4WA18 35562175
    163022 7rx2:A (2.7) BS05 CA ? GO:0005245 ... Q4WA18 35562175
    163023 7rx2:B (2.7) BS01 CA ? GO:0005245 ... Q4WA18 35562175
    163024 7rx2:B (2.7) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    163025 7rxf:A (1.16) BS01 MG 5.3.3.1 GO:0004769 ... P07445 36240280
    163026 7rxg:A (2.28) BS04 CA ? GO:0005245 ... Q4WA18 35562175
    163027 7rxg:A (2.28) BS05 CA ? GO:0005245 ... Q4WA18 35562175
    163028 7rxg:B (2.28) BS01 CA ? GO:0005245 ... Q4WA18 35562175
    163029 7rxg:B (2.28) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    163030 7rxh:A (2.3) BS01 CA ? GO:0005245 ... Q4WA18 35562175
    163031 7rxh:A (2.3) BS02 CA ? GO:0005245 ... Q4WA18 35562175
    163032 7rxn:A (1.5) BS01 FE ? GO:0005506 ... P00269 1992166
    163033 7ryf:3 (2.65) BS02 ZN ? GO:0003735 ... B7IA18 35100868
    163034 7ryg:3 (2.38) BS02 ZN ? GO:0003735 ... B7IA18 35100868
    163035 7ryh:3 (2.43) BS02 ZN ? GO:0003735 ... B7IA18 35100868
    163036 7rzc:A (2.04) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    163037 7rzc:B (2.04) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    163038 7rzc:C (2.04) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 N/A
    163039 7rzk:A (1.9) BS02 MG ? GO:0004371 ... Q2FZ58 N/A
    163040 7rzk:A (1.9) BS03 MG ? GO:0004371 ... Q2FZ58 N/A
    163041 7rzk:A (1.9) BS04 CO ? GO:0004371 ... Q2FZ58 N/A
    163042 7s00:D (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... A0A172JI62 35725571
    163043 7s00:F (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... A0A172JI62 35725571
    163044 7s01:D (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... A0A172JI62 35725571
    163045 7s04:A (2.52) BS02 MG 1.1.1.267 GO:0008299 ... B7H1U5 34672535
    163046 7s05:A (3.1) BS01 CA 2.7.8.17 GO:0000139 ... Q3T906 35332324
    163047 7s05:B (3.1) BS01 CA 2.7.8.17 GO:0000139 ... Q3T906 35332324
    163048 7s0i:A (2.892) BS01 CA 3.2.1.18 GO:0004308 ... A0A0X9QTS2 34809451
    163049 7s0i:A (2.892) BS02 CA 3.2.1.18 GO:0004308 ... A0A0X9QTS2 34809451
    163050 7s0s:D (3.05) BS02 MG ? GO:0002181 ... A0QSD4 35357969
    163051 7s0s:D (3.05) BS03 MG ? GO:0002181 ... A0QSD4 35357969
    163052 7s0s:D (3.05) BS04 MG ? GO:0002181 ... A0QSD4 35357969
    163053 7s0s:O (3.05) BS02 MG ? GO:0000049 ... A0QSD8 35357969
    163054 7s0s:Z (3.05) BS02 ZN ? GO:0003735 ... A0QV03 35357969
    163055 7s0s:d (3.05) BS02 ZN ? GO:0003735 ... A0QS39 35357969
    163056 7s0s:g (3.05) BS02 ZN ? GO:0003735 ... A0QSL4 35357969
    163057 7s0s:h (3.05) BS02 ZN ? GO:0003735 ... A0R215 35357969
    163058 7s0t:A (3.05) BS04 CA 2.7.7.7 GO:0000166 ... P14284 35217661
    163059 7s0w:A (2.5) BS01 CO 5.4.2.2 GO:0000287 ... P36871 35506765
    163060 7s0w:B (2.5) BS01 CO 5.4.2.2 GO:0000287 ... P36871 35506765
    163061 7s0y:A (2.79) BS01 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 34678063
    163062 7s0z:A (2.34) BS02 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 34678063
    163063 7s0z:A (2.34) BS03 MG 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 34678063
    163064 7s0z:B (2.34) BS02 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... Q9EXR0 34678063
    163065 7s14:A (1.65) BS02 CA 1.-.-.- GO:0000166 ... Q4QJZ7 35195438
    163066 7s14:C (1.65) BS02 CA 1.-.-.- GO:0000166 ... Q4QJZ7 35195438
    163067 7s1c:B (1.949) BS01 CU ? GO:0003756 ... P0AEG4 N/A
    163068 7s1c:B (1.949) BS02 CU ? GO:0003756 ... P0AEG4 N/A
    163069 7s1d:B (1.59) BS01 CU ? GO:0003756 ... P0AEG4 N/A
    163070 7s1f:B (1.76) BS01 CU ? GO:0003756 ... P0AEG4 N/A
    163071 7s1g:K (2.48) BS03 MG ? GO:0000027 ... P60422 35165456
    163072 7s1g:Q (2.48) BS02 ZN ? GO:0002181 ... P0A7M9 35165456
    163073 7s1g:m (2.48) BS02 ZN ? GO:0002181 ... P0A7Q6 35165456
    163074 7s1h:K (2.35) BS02 MG ? GO:0000027 ... P60422 35165456
    163075 7s1h:Q (2.35) BS02 ZN ? GO:0002181 ... P0A7M9 35165456
    163076 7s1h:m (2.35) BS02 ZN ? GO:0002181 ... P0A7Q6 35165456
    163077 7s1i:K (2.48) BS03 MG ? GO:0000027 ... P60422 35165456
    163078 7s1i:Q (2.48) BS03 ZN ? GO:0002181 ... P0A7M9 35165456
    163079 7s1i:m (2.48) BS02 ZN ? GO:0002181 ... P0A7Q6 35165456
    163080 7s1j:Q (2.47) BS02 ZN ? GO:0002181 ... P0A7M9 35165456
    163081 7s1j:m (2.47) BS02 ZN ? GO:0002181 ... P0A7Q6 35165456
    163082 7s1j:v (2.47) BS02 MG ? GO:0000028 ... P0AG59 35165456
    163083 7s1k:Q (2.42) BS02 ZN ? GO:0002181 ... P0A7M9 35165456
    163084 7s1k:m (2.42) BS02 ZN ? GO:0002181 ... P0A7Q6 35165456
    163085 7s1k:v (2.42) BS02 MG ? GO:0000028 ... P0AG59 35165456
    163086 7s1l:B (1.623) BS02 CU ? GO:0003756 ... P0AEG4 N/A
    163087 7s1o:A (2.55) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163088 7s1o:B (2.55) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163089 7s1t:A (2.9) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163090 7s1t:D (2.9) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163091 7s1t:G (2.9) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163092 7s1t:J (2.9) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163093 7s1u:A (2.55) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163094 7s1u:B (2.55) BS01 ZN ? GO:0000723 ... Q9NUX5 35140887
    163095 7s3d:L (2.91) BS06 CA ? GO:0009522 ... B4WP22 34793839
    163096 7s3d:U (2.91) BS06 CA ? GO:0009522 ... B4WP22 34793839
    163097 7s3d:l (2.91) BS07 CA ? GO:0009522 ... B4WP22 34793839
    163098 7s3x:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163099 7s3x:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163100 7s3y:A (2.08) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163101 7s3y:B (2.08) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163102 7s3z:A (1.7297) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163103 7s3z:B (1.7297) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163104 7s40:A (1.7969) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163105 7s40:B (1.7969) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 N/A
    163106 7s4h:A (2.14) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163107 7s4h:A (2.14) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163108 7s4h:C (2.14) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163109 7s4h:E (2.14) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163110 7s4h:E (2.14) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163111 7s4h:G (2.14) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163112 7s4h:I (2.14) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163113 7s4h:I (2.14) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163114 7s4h:K (2.14) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163115 7s4i:A (2.26) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163116 7s4i:A (2.26) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163117 7s4i:C (2.26) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163118 7s4i:E (2.26) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163119 7s4i:E (2.26) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163120 7s4i:G (2.26) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163121 7s4i:I (2.26) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163122 7s4i:I (2.26) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163123 7s4i:K (2.26) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163124 7s4j:A (2.16) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163125 7s4j:A (2.16) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163126 7s4j:C (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163127 7s4j:E (2.16) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163128 7s4j:E (2.16) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163129 7s4j:G (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163130 7s4j:I (2.16) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163131 7s4j:I (2.16) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163132 7s4j:K (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163133 7s4k:A (2.36) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163134 7s4k:A (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163135 7s4k:C (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163136 7s4k:E (2.36) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163137 7s4k:E (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163138 7s4k:G (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163139 7s4k:I (2.36) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    163140 7s4k:I (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    163141 7s4k:K (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    163142 7s4l:A (2.46) BS01 CU 1.14.13.25 N/A G4SZ64 35298269
    163143 7s4l:A (2.46) BS02 CU 1.14.13.25 N/A G4SZ64 35298269
    163144 7s4l:C (2.46) BS01 CU 1.14.13.25 GO:0004497 ... G4SZ62 35298269
    163145 7s4l:D (2.46) BS02 CU 1.14.13.25 N/A G4SZ64 35298269
    163146 7s4l:D (2.46) BS03 CU 1.14.13.25 N/A G4SZ64 35298269
    163147 7s4l:E (2.46) BS02 CU 1.14.13.25 N/A G4SZ64 35298269
    163148 7s4l:E (2.46) BS03 CU 1.14.13.25 N/A G4SZ64 35298269
    163149 7s4l:H (2.46) BS01 CU 1.14.13.25 GO:0004497 ... G4SZ62 35298269
    163150 7s4l:I (2.46) BS01 CU 1.14.13.25 GO:0004497 ... G4SZ62 35298269
    163151 7s4m:A (2.42) BS01 CU N/A N/A N/A 35298269
    163152 7s4m:C (2.42) BS01 CU N/A N/A N/A 35298269
    163153 7s4m:E (2.42) BS01 CU N/A N/A N/A 35298269
    163154 7s4m:G (2.42) BS02 CU N/A N/A N/A 35298269
    163155 7s4m:I (2.42) BS01 CU N/A N/A N/A 35298269
    163156 7s4m:K (2.42) BS02 CU N/A N/A N/A 35298269
    163157 7s4x:A (2.76) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 35236982
    163158 7s4x:A (2.76) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 35236982
    163159 7s4z:A (1.9) BS01 CA 3.4.21.64 GO:0004252 ... P06873 35511023
    163160 7s4z:A (1.9) BS02 CA 3.4.21.64 GO:0004252 ... P06873 35511023
    163161 7s5c:A (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163162 7s5c:A (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163163 7s5c:A (1.86) BS03 FE ? N/A Q1D6H3 35150605
    163164 7s5c:A (1.86) BS04 CA ? N/A Q1D6H3 35150605
    163165 7s5c:A (1.86) BS05 FE ? N/A Q1D6H3 35150605
    163166 7s5c:B (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163167 7s5c:B (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163168 7s5c:B (1.86) BS03 FE ? N/A Q1D6H3 35150605
    163169 7s5c:B (1.86) BS04 FE ? N/A Q1D6H3 35150605
    163170 7s5c:B (1.86) BS05 CA ? N/A Q1D6H3 35150605
    163171 7s5c:C (1.86) BS01 CA ? N/A Q1D6H3 35150605
    163172 7s5c:C (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163173 7s5c:C (1.86) BS03 FE ? N/A Q1D6H3 35150605
    163174 7s5c:D (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163175 7s5c:D (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163176 7s5c:D (1.86) BS03 FE ? N/A Q1D6H3 35150605
    163177 7s5c:D (1.86) BS04 CA ? N/A Q1D6H3 35150605
    163178 7s5c:E (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163179 7s5c:E (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163180 7s5c:E (1.86) BS03 CA ? N/A Q1D6H3 35150605
    163181 7s5c:E (1.86) BS04 FE ? N/A Q1D6H3 35150605
    163182 7s5c:F (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163183 7s5c:F (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163184 7s5c:F (1.86) BS03 FE ? N/A Q1D6H3 35150605
    163185 7s5c:F (1.86) BS04 FE ? N/A Q1D6H3 35150605
    163186 7s5c:F (1.86) BS05 CA ? N/A Q1D6H3 35150605
    163187 7s5c:G (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163188 7s5c:G (1.86) BS02 CA ? N/A Q1D6H3 35150605
    163189 7s5c:G (1.86) BS03 FE ? N/A Q1D6H3 35150605
    163190 7s5c:G (1.86) BS04 FE ? N/A Q1D6H3 35150605
    163191 7s5c:H (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163192 7s5c:H (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163193 7s5c:H (1.86) BS03 FE ? N/A Q1D6H3 35150605
    163194 7s5c:H (1.86) BS04 CA ? N/A Q1D6H3 35150605
    163195 7s5c:I (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163196 7s5c:I (1.86) BS02 FE ? N/A Q1D6H3 35150605
    163197 7s5c:I (1.86) BS03 CA ? N/A Q1D6H3 35150605
    163198 7s5c:I (1.86) BS04 FE ? N/A Q1D6H3 35150605
    163199 7s5c:J (1.86) BS01 FE ? N/A Q1D6H3 35150605
    163200 7s5c:J (1.86) BS02 FE ? N/A Q1D6H3 35150605
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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