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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162401 7rqa:2F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162402 7rqa:2G (2.4) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162403 7rqa:2Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    162404 7rqa:2U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    162405 7rqa:2V (2.4) BS02 MG ? GO:0003723 ... P60492 35165455
    162406 7rqa:2V (2.4) BS03 MG ? GO:0003723 ... P60492 35165455
    162407 7rqa:2V (2.4) BS04 MG ? GO:0003723 ... P60492 35165455
    162408 7rqa:2W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    162409 7rqa:2Y (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162410 7rqa:2f (2.4) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    162411 7rqa:2k (2.4) BS02 MG ? GO:0003735 ... P80376 35165455
    162412 7rqa:2n (2.4) BS02 ZN ? GO:0003735 ... P0DOY6 35165455
    162413 7rqb:10 (2.45) BS03 MG ? GO:0003735 ... P60493 35165455
    162414 7rqb:10 (2.45) BS04 MG ? GO:0003735 ... P60493 35165455
    162415 7rqb:10 (2.45) BS05 MG ? GO:0003735 ... P60493 35165455
    162416 7rqb:11 (2.45) BS02 MG ? GO:0003735 ... P60494 35165455
    162417 7rqb:13 (2.45) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    162418 7rqb:13 (2.45) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    162419 7rqb:13 (2.45) BS05 MG ? GO:0003735 ... Q5SHQ6 35165455
    162420 7rqb:14 (2.45) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162421 7rqb:15 (2.45) BS02 MG ? GO:0003735 ... P80339 35165455
    162422 7rqb:15 (2.45) BS03 MG ? GO:0003735 ... P80339 35165455
    162423 7rqb:15 (2.45) BS04 MG ? GO:0003735 ... P80339 35165455
    162424 7rqb:15 (2.45) BS05 MG ? GO:0003735 ... P80339 35165455
    162425 7rqb:15 (2.45) BS06 ZN ? GO:0003735 ... P80339 35165455
    162426 7rqb:16 (2.45) BS02 ZN ? GO:0000049 ... P35871 35165455
    162427 7rqb:17 (2.45) BS02 MG ? GO:0003735 ... P80340 35165455
    162428 7rqb:17 (2.45) BS03 MG ? GO:0003735 ... P80340 35165455
    162429 7rqb:18 (2.45) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    162430 7rqb:18 (2.45) BS03 MG ? GO:0003735 ... Q5SKU1 35165455
    162431 7rqb:19 (2.45) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162432 7rqb:1D (2.45) BS03 MG ? GO:0002181 ... P60405 35165455
    162433 7rqb:1D (2.45) BS04 MG ? GO:0002181 ... P60405 35165455
    162434 7rqb:1D (2.45) BS05 MG ? GO:0002181 ... P60405 35165455
    162435 7rqb:1D (2.45) BS06 MG ? GO:0002181 ... P60405 35165455
    162436 7rqb:1D (2.45) BS07 MG ? GO:0002181 ... P60405 35165455
    162437 7rqb:1D (2.45) BS08 MG ? GO:0002181 ... P60405 35165455
    162438 7rqb:1D (2.45) BS09 MG ? GO:0002181 ... P60405 35165455
    162439 7rqb:1D (2.45) BS10 MG ? GO:0002181 ... P60405 35165455
    162440 7rqb:1D (2.45) BS11 MG ? GO:0002181 ... P60405 35165455
    162441 7rqb:1D (2.45) BS12 MG ? GO:0002181 ... P60405 35165455
    162442 7rqb:1E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162443 7rqb:1E (2.45) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162444 7rqb:1E (2.45) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    162445 7rqb:1E (2.45) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    162446 7rqb:1F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162447 7rqb:1F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162448 7rqb:1F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162449 7rqb:1F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162450 7rqb:1F (2.45) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    162451 7rqb:1F (2.45) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    162452 7rqb:1F (2.45) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    162453 7rqb:1F (2.45) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    162454 7rqb:1F (2.45) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    162455 7rqb:1F (2.45) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    162456 7rqb:1F (2.45) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    162457 7rqb:1F (2.45) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    162458 7rqb:1F (2.45) BS14 MG ? GO:0003735 ... Q5SHN9 35165455
    162459 7rqb:1G (2.45) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162460 7rqb:1G (2.45) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    162461 7rqb:1N (2.45) BS02 MG ? GO:0003729 ... P60488 35165455
    162462 7rqb:1N (2.45) BS03 MG ? GO:0003729 ... P60488 35165455
    162463 7rqb:1P (2.45) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    162464 7rqb:1Q (2.45) BS03 MG ? GO:0000049 ... P60489 35165455
    162465 7rqb:1Q (2.45) BS04 MG ? GO:0000049 ... P60489 35165455
    162466 7rqb:1Q (2.45) BS05 MG ? GO:0000049 ... P60489 35165455
    162467 7rqb:1Q (2.45) BS06 MG ? GO:0000049 ... P60489 35165455
    162468 7rqb:1R (2.45) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    162469 7rqb:1R (2.45) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    162470 7rqb:1U (2.45) BS02 MG ? GO:0000027 ... P60491 35165455
    162471 7rqb:1U (2.45) BS03 MG ? GO:0000027 ... P60491 35165455
    162472 7rqb:1U (2.45) BS04 MG ? GO:0000027 ... P60491 35165455
    162473 7rqb:1U (2.45) BS05 MG ? GO:0000027 ... P60491 35165455
    162474 7rqb:1U (2.45) BS06 MG ? GO:0000027 ... P60491 35165455
    162475 7rqb:1V (2.45) BS02 MG ? GO:0003723 ... P60492 35165455
    162476 7rqb:1V (2.45) BS03 MG ? GO:0003723 ... P60492 35165455
    162477 7rqb:1V (2.45) BS04 MG ? GO:0003723 ... P60492 35165455
    162478 7rqb:1W (2.45) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    162479 7rqb:1W (2.45) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    162480 7rqb:1Y (2.45) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162481 7rqb:1d (2.45) BS02 MG ? GO:0003723 ... P80373 35165455
    162482 7rqb:1e (2.45) BS02 MG ? GO:0003723 ... Q5SHQ5 35165455
    162483 7rqb:1k (2.45) BS02 MG ? GO:0003735 ... P80376 35165455
    162484 7rqb:1l (2.45) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    162485 7rqb:1m (2.45) BS03 MG ? GO:0000049 ... P80377 35165455
    162486 7rqb:1n (2.45) BS02 ZN ? GO:0003735 ... P0DOY6 35165455
    162487 7rqb:1t (2.45) BS02 MG ? GO:0003723 ... P80380 35165455
    162488 7rqb:1y (2.45) BS02 MG ? GO:0005515 ... P0AD49 35165455
    162489 7rqb:20 (2.45) BS03 MG ? GO:0003735 ... P60493 35165455
    162490 7rqb:24 (2.45) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162491 7rqb:25 (2.45) BS02 MG ? GO:0003735 ... P80339 35165455
    162492 7rqb:25 (2.45) BS03 ZN ? GO:0003735 ... P80339 35165455
    162493 7rqb:26 (2.45) BS02 MG ? GO:0000049 ... P35871 35165455
    162494 7rqb:26 (2.45) BS03 ZN ? GO:0000049 ... P35871 35165455
    162495 7rqb:27 (2.45) BS02 MG ? GO:0003735 ... P80340 35165455
    162496 7rqb:27 (2.45) BS03 MG ? GO:0003735 ... P80340 35165455
    162497 7rqb:27 (2.45) BS04 MG ? GO:0003735 ... P80340 35165455
    162498 7rqb:29 (2.45) BS02 MG ? GO:0003735 ... Q5SHR2 35165455
    162499 7rqb:29 (2.45) BS03 ZN ? GO:0003735 ... Q5SHR2 35165455
    162500 7rqb:2D (2.45) BS03 MG ? GO:0002181 ... P60405 35165455
    162501 7rqb:2D (2.45) BS04 MG ? GO:0002181 ... P60405 35165455
    162502 7rqb:2D (2.45) BS05 MG ? GO:0002181 ... P60405 35165455
    162503 7rqb:2D (2.45) BS06 MG ? GO:0002181 ... P60405 35165455
    162504 7rqb:2E (2.45) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162505 7rqb:2E (2.45) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162506 7rqb:2E (2.45) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    162507 7rqb:2F (2.45) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162508 7rqb:2F (2.45) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162509 7rqb:2F (2.45) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162510 7rqb:2F (2.45) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162511 7rqb:2Q (2.45) BS03 MG ? GO:0000049 ... P60489 35165455
    162512 7rqb:2Q (2.45) BS04 MG ? GO:0000049 ... P60489 35165455
    162513 7rqb:2R (2.45) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    162514 7rqb:2U (2.45) BS02 MG ? GO:0000027 ... P60491 35165455
    162515 7rqb:2V (2.45) BS02 MG ? GO:0003723 ... P60492 35165455
    162516 7rqb:2V (2.45) BS03 MG ? GO:0003723 ... P60492 35165455
    162517 7rqb:2W (2.45) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    162518 7rqb:2W (2.45) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    162519 7rqb:2Y (2.45) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162520 7rqb:2f (2.45) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    162521 7rqb:2k (2.45) BS02 MG ? GO:0003735 ... P80376 35165455
    162522 7rqb:2l (2.45) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    162523 7rqb:2n (2.45) BS02 ZN ? GO:0003735 ... P0DOY6 35165455
    162524 7rqb:2t (2.45) BS02 MG ? GO:0003723 ... P80380 35165455
    162525 7rqc:10 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    162526 7rqc:10 (2.5) BS04 MG ? GO:0003735 ... P60493 35165455
    162527 7rqc:10 (2.5) BS05 MG ? GO:0003735 ... P60493 35165455
    162528 7rqc:11 (2.5) BS02 MG ? GO:0003735 ... P60494 35165455
    162529 7rqc:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    162530 7rqc:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    162531 7rqc:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162532 7rqc:15 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    162533 7rqc:15 (2.5) BS03 MG ? GO:0003735 ... P80339 35165455
    162534 7rqc:15 (2.5) BS04 MG ? GO:0003735 ... P80339 35165455
    162535 7rqc:15 (2.5) BS05 ZN ? GO:0003735 ... P80339 35165455
    162536 7rqc:16 (2.5) BS02 ZN ? GO:0000049 ... P35871 35165455
    162537 7rqc:17 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    162538 7rqc:17 (2.5) BS03 MG ? GO:0003735 ... P80340 35165455
    162539 7rqc:17 (2.5) BS04 MG ? GO:0003735 ... P80340 35165455
    162540 7rqc:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    162541 7rqc:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162542 7rqc:1D (2.5) BS02 MG ? GO:0002181 ... P60405 35165455
    162543 7rqc:1D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    162544 7rqc:1D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    162545 7rqc:1D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    162546 7rqc:1D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    162547 7rqc:1D (2.5) BS07 MG ? GO:0002181 ... P60405 35165455
    162548 7rqc:1D (2.5) BS08 MG ? GO:0002181 ... P60405 35165455
    162549 7rqc:1D (2.5) BS09 MG ? GO:0002181 ... P60405 35165455
    162550 7rqc:1D (2.5) BS10 MG ? GO:0002181 ... P60405 35165455
    162551 7rqc:1D (2.5) BS11 MG ? GO:0002181 ... P60405 35165455
    162552 7rqc:1D (2.5) BS12 MG ? GO:0002181 ... P60405 35165455
    162553 7rqc:1D (2.5) BS13 MG ? GO:0002181 ... P60405 35165455
    162554 7rqc:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162555 7rqc:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162556 7rqc:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    162557 7rqc:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    162558 7rqc:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162559 7rqc:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162560 7rqc:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162561 7rqc:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162562 7rqc:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    162563 7rqc:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    162564 7rqc:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    162565 7rqc:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    162566 7rqc:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    162567 7rqc:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    162568 7rqc:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162569 7rqc:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    162570 7rqc:1N (2.5) BS02 MG ? GO:0003729 ... P60488 35165455
    162571 7rqc:1N (2.5) BS03 MG ? GO:0003729 ... P60488 35165455
    162572 7rqc:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 35165455
    162573 7rqc:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    162574 7rqc:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    162575 7rqc:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    162576 7rqc:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 35165455
    162577 7rqc:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 35165455
    162578 7rqc:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 35165455
    162579 7rqc:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 35165455
    162580 7rqc:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    162581 7rqc:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    162582 7rqc:1R (2.5) BS04 MG ? GO:0003735 ... Q9Z9H5 35165455
    162583 7rqc:1R (2.5) BS05 MG ? GO:0003735 ... Q9Z9H5 35165455
    162584 7rqc:1U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    162585 7rqc:1U (2.5) BS03 MG ? GO:0000027 ... P60491 35165455
    162586 7rqc:1U (2.5) BS04 MG ? GO:0000027 ... P60491 35165455
    162587 7rqc:1U (2.5) BS05 MG ? GO:0000027 ... P60491 35165455
    162588 7rqc:1U (2.5) BS06 MG ? GO:0000027 ... P60491 35165455
    162589 7rqc:1V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    162590 7rqc:1V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    162591 7rqc:1V (2.5) BS04 MG ? GO:0003723 ... P60492 35165455
    162592 7rqc:1V (2.5) BS05 MG ? GO:0003723 ... P60492 35165455
    162593 7rqc:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    162594 7rqc:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162595 7rqc:1b (2.5) BS02 MG ? GO:0003735 ... P80371 35165455
    162596 7rqc:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 35165455
    162597 7rqc:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    162598 7rqc:1k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    162599 7rqc:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    162600 7rqc:1m (2.5) BS03 MG ? GO:0000049 ... P80377 35165455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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