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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162001 7ron:A (1.68) BS09 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162002 7ron:A (1.68) BS10 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162003 7ron:A (1.68) BS11 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162004 7ron:A (1.68) BS12 MG ? GO:0046872 ... A0A1Y0K711 35212625
    162005 7ron:A (1.68) BS13 MG ? GO:0046872 ... A0A1Y0K711 35212625
    162006 7roo:A (1.52) BS03 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162007 7roo:A (1.52) BS04 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162008 7roo:A (1.52) BS05 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162009 7roo:A (1.52) BS06 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162010 7roo:A (1.52) BS07 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162011 7roo:A (1.52) BS08 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162012 7roo:A (1.52) BS09 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162013 7roo:A (1.52) BS10 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162014 7roo:A (1.52) BS11 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162015 7roo:A (1.52) BS12 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162016 7roo:A (1.52) BS13 MG ? GO:0046872 ... A0A1Y0K711 35212625
    162017 7roo:A (1.52) BS14 MG ? GO:0046872 ... A0A1Y0K711 35212625
    162018 7ror:A (1.8) BS02 MG 6.1.1.1 GO:0000166 ... Q8IAR7 35653481
    162019 7ror:A (1.8) BS03 MG 6.1.1.1 GO:0000166 ... Q8IAR7 35653481
    162020 7ror:B (1.8) BS02 MG 6.1.1.1 GO:0000166 ... Q8IAR7 35653481
    162021 7ros:A (2.15) BS02 MG 6.1.1.1 GO:0000166 ... Q8IAR7 35653481
    162022 7ros:B (2.15) BS02 MG 6.1.1.1 GO:0000166 ... Q8IAR7 35653481
    162023 7rot:A (2.2) BS02 MG 6.1.1.1 GO:0000166 ... Q8IAR7 35653481
    162024 7rot:A (2.2) BS03 MG 6.1.1.1 GO:0000166 ... Q8IAR7 35653481
    162025 7roy:A (2.9) BS02 ZN ? N/A Q9Z2G0 34562363
    162026 7roy:C (2.9) BS02 ZN ? N/A Q9Z2G0 34562363
    162027 7roz:A (3.1) BS01 MG 2.7.7.48 GO:0003723 ... O82504 34903670
    162028 7rpk:H (2.7) BS01 CA 3.1.-.- GO:0007267 ... Q62226 34707294
    162029 7rpk:H (2.7) BS02 CA 3.1.-.- GO:0007267 ... Q62226 34707294
    162030 7rpk:H (2.7) BS03 ZN 3.1.-.- GO:0007267 ... Q62226 34707294
    162031 7rpo:E (4.16) BS04 MN 6.5.1.1 GO:0003677 ... Q980T8 34838188
    162032 7rpo:E (4.16) BS06 MN 6.5.1.1 GO:0003677 ... Q980T8 34838188
    162033 7rpv:A (3.54) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q9BYF1 34845451
    162034 7rpw:E (4.38) BS04 MN 6.5.1.1 GO:0003677 ... Q980T8 34838188
    162035 7rpw:E (4.38) BS06 MN 6.5.1.1 GO:0003677 ... Q980T8 34838188
    162036 7rpw:E (4.38) BS07 MN 6.5.1.1 GO:0003677 ... Q980T8 34838188
    162037 7rpx:E (4.2) BS03 MN 6.5.1.1 GO:0003677 ... Q980T8 34838188
    162038 7rpx:E (4.2) BS04 MN 6.5.1.1 GO:0003677 ... Q980T8 34838188
    162039 7rq8:10 (2.5) BS04 MG ? GO:0003735 ... P60493 34707295
    162040 7rq8:10 (2.5) BS05 MG ? GO:0003735 ... P60493 34707295
    162041 7rq8:11 (2.5) BS03 MG ? GO:0003735 ... P60494 34707295
    162042 7rq8:12 (2.5) BS02 MG ? GO:0003735 ... Q5SHP6 34707295
    162043 7rq8:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 34707295
    162044 7rq8:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 34707295
    162045 7rq8:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 34707295
    162046 7rq8:15 (2.5) BS02 ZN ? GO:0003735 ... P80339 34707295
    162047 7rq8:16 (2.5) BS02 MG ? GO:0000049 ... P35871 34707295
    162048 7rq8:16 (2.5) BS03 MG ? GO:0000049 ... P35871 34707295
    162049 7rq8:16 (2.5) BS04 ZN ? GO:0000049 ... P35871 34707295
    162050 7rq8:17 (2.5) BS02 MG ? GO:0003735 ... P80340 34707295
    162051 7rq8:17 (2.5) BS03 MG ? GO:0003735 ... P80340 34707295
    162052 7rq8:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 34707295
    162053 7rq8:18 (2.5) BS03 MG ? GO:0003735 ... Q5SKU1 34707295
    162054 7rq8:18 (2.5) BS04 MG ? GO:0003735 ... Q5SKU1 34707295
    162055 7rq8:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 34707295
    162056 7rq8:1D (2.5) BS03 MG ? GO:0002181 ... P60405 34707295
    162057 7rq8:1D (2.5) BS04 MG ? GO:0002181 ... P60405 34707295
    162058 7rq8:1D (2.5) BS05 MG ? GO:0002181 ... P60405 34707295
    162059 7rq8:1D (2.5) BS06 MG ? GO:0002181 ... P60405 34707295
    162060 7rq8:1D (2.5) BS07 MG ? GO:0002181 ... P60405 34707295
    162061 7rq8:1D (2.5) BS08 MG ? GO:0002181 ... P60405 34707295
    162062 7rq8:1D (2.5) BS09 MG ? GO:0002181 ... P60405 34707295
    162063 7rq8:1D (2.5) BS10 MG ? GO:0002181 ... P60405 34707295
    162064 7rq8:1D (2.5) BS11 MG ? GO:0002181 ... P60405 34707295
    162065 7rq8:1D (2.5) BS12 MG ? GO:0002181 ... P60405 34707295
    162066 7rq8:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 34707295
    162067 7rq8:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 34707295
    162068 7rq8:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 34707295
    162069 7rq8:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 34707295
    162070 7rq8:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 34707295
    162071 7rq8:1E (2.5) BS07 MG ? GO:0003735 ... Q5SHN8 34707295
    162072 7rq8:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 34707295
    162073 7rq8:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 34707295
    162074 7rq8:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 34707295
    162075 7rq8:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 34707295
    162076 7rq8:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 34707295
    162077 7rq8:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 34707295
    162078 7rq8:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 34707295
    162079 7rq8:1G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 34707295
    162080 7rq8:1N (2.5) BS02 MG ? GO:0003729 ... P60488 34707295
    162081 7rq8:1N (2.5) BS03 MG ? GO:0003729 ... P60488 34707295
    162082 7rq8:1N (2.5) BS04 MG ? GO:0003729 ... P60488 34707295
    162083 7rq8:1O (2.5) BS03 MG ? GO:0003735 ... Q5SHP8 34707295
    162084 7rq8:1O (2.5) BS04 MG ? GO:0003735 ... Q5SHP8 34707295
    162085 7rq8:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 34707295
    162086 7rq8:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 34707295
    162087 7rq8:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 34707295
    162088 7rq8:1P (2.5) BS05 MG ? GO:0003735 ... Q5SHQ7 34707295
    162089 7rq8:1P (2.5) BS06 MG ? GO:0003735 ... Q5SHQ7 34707295
    162090 7rq8:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 34707295
    162091 7rq8:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 34707295
    162092 7rq8:1Q (2.5) BS06 MG ? GO:0000049 ... P60489 34707295
    162093 7rq8:1Q (2.5) BS07 MG ? GO:0000049 ... P60489 34707295
    162094 7rq8:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 34707295
    162095 7rq8:1S (2.5) BS03 MG ? GO:0003735 ... Q5SHQ4 34707295
    162096 7rq8:1S (2.5) BS04 MG ? GO:0003735 ... Q5SHQ4 34707295
    162097 7rq8:1U (2.5) BS02 MG ? GO:0000027 ... P60491 34707295
    162098 7rq8:1U (2.5) BS03 MG ? GO:0000027 ... P60491 34707295
    162099 7rq8:1U (2.5) BS04 MG ? GO:0000027 ... P60491 34707295
    162100 7rq8:1U (2.5) BS05 MG ? GO:0000027 ... P60491 34707295
    162101 7rq8:1U (2.5) BS06 MG ? GO:0000027 ... P60491 34707295
    162102 7rq8:1U (2.5) BS07 MG ? GO:0000027 ... P60491 34707295
    162103 7rq8:1U (2.5) BS08 MG ? GO:0000027 ... P60491 34707295
    162104 7rq8:1V (2.5) BS02 MG ? GO:0003723 ... P60492 34707295
    162105 7rq8:1V (2.5) BS03 MG ? GO:0003723 ... P60492 34707295
    162106 7rq8:1V (2.5) BS04 MG ? GO:0003723 ... P60492 34707295
    162107 7rq8:1V (2.5) BS05 MG ? GO:0003723 ... P60492 34707295
    162108 7rq8:1V (2.5) BS06 MG ? GO:0003723 ... P60492 34707295
    162109 7rq8:1V (2.5) BS07 MG ? GO:0003723 ... P60492 34707295
    162110 7rq8:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    162111 7rq8:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 34707295
    162112 7rq8:1W (2.5) BS04 MG ? GO:0003735 ... Q5SHP3 34707295
    162113 7rq8:1W (2.5) BS05 MG ? GO:0003735 ... Q5SHP3 34707295
    162114 7rq8:1X (2.5) BS02 MG ? GO:0000027 ... Q5SHP0 34707295
    162115 7rq8:1X (2.5) BS03 MG ? GO:0000027 ... Q5SHP0 34707295
    162116 7rq8:1X (2.5) BS04 MG ? GO:0000027 ... Q5SHP0 34707295
    162117 7rq8:1X (2.5) BS05 MG ? GO:0000027 ... Q5SHP0 34707295
    162118 7rq8:1X (2.5) BS06 MG ? GO:0000027 ... Q5SHP0 34707295
    162119 7rq8:1Y (2.5) BS02 MG ? GO:0003723 ... Q5SHP9 34707295
    162120 7rq8:1Y (2.5) BS03 ZN ? GO:0003723 ... Q5SHP9 34707295
    162121 7rq8:1b (2.5) BS02 MG ? GO:0003735 ... P80371 34707295
    162122 7rq8:1e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    162123 7rq8:1e (2.5) BS03 MG ? GO:0003723 ... Q5SHQ5 34707295
    162124 7rq8:1f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    162125 7rq8:1k (2.5) BS02 MG ? GO:0003735 ... P80376 34707295
    162126 7rq8:1l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    162127 7rq8:1m (2.5) BS04 MG ? GO:0000049 ... P80377 34707295
    162128 7rq8:1n (2.5) BS02 MG ? GO:0003735 ... P0DOY6 34707295
    162129 7rq8:1n (2.5) BS03 ZN ? GO:0003735 ... P0DOY6 34707295
    162130 7rq8:1t (2.5) BS02 MG ? GO:0003723 ... P80380 34707295
    162131 7rq8:21 (2.5) BS02 MG ? GO:0003735 ... P60494 34707295
    162132 7rq8:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 34707295
    162133 7rq8:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 34707295
    162134 7rq8:25 (2.5) BS02 MG ? GO:0003735 ... P80339 34707295
    162135 7rq8:25 (2.5) BS03 ZN ? GO:0003735 ... P80339 34707295
    162136 7rq8:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 34707295
    162137 7rq8:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 34707295
    162138 7rq8:2D (2.5) BS03 MG ? GO:0002181 ... P60405 34707295
    162139 7rq8:2D (2.5) BS04 MG ? GO:0002181 ... P60405 34707295
    162140 7rq8:2D (2.5) BS05 MG ? GO:0002181 ... P60405 34707295
    162141 7rq8:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 34707295
    162142 7rq8:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 34707295
    162143 7rq8:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 34707295
    162144 7rq8:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 34707295
    162145 7rq8:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 34707295
    162146 7rq8:2Q (2.5) BS04 MG ? GO:0000049 ... P60489 34707295
    162147 7rq8:2T (2.5) BS03 MG ? GO:0003735 ... P60490 34707295
    162148 7rq8:2V (2.5) BS02 MG ? GO:0003723 ... P60492 34707295
    162149 7rq8:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    162150 7rq8:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 34707295
    162151 7rq8:2e (2.5) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    162152 7rq8:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    162153 7rq8:2k (2.5) BS02 MG ? GO:0003735 ... P80376 34707295
    162154 7rq8:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 34707295
    162155 7rq8:2l (2.5) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    162156 7rq8:2n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 34707295
    162157 7rq8:2q (2.5) BS02 MG ? GO:0003735 ... P0DOY7 34707295
    162158 7rq8:2q (2.5) BS03 MG ? GO:0003735 ... P0DOY7 34707295
    162159 7rq8:2t (2.5) BS02 MG ? GO:0003723 ... P80380 34707295
    162160 7rq9:10 (2.6) BS03 MG ? GO:0003735 ... P60493 34707295
    162161 7rq9:10 (2.6) BS04 MG ? GO:0003735 ... P60493 34707295
    162162 7rq9:10 (2.6) BS05 MG ? GO:0003735 ... P60493 34707295
    162163 7rq9:11 (2.6) BS03 MG ? GO:0003735 ... P60494 34707295
    162164 7rq9:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 34707295
    162165 7rq9:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 34707295
    162166 7rq9:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 34707295
    162167 7rq9:15 (2.6) BS02 MG ? GO:0003735 ... P80339 34707295
    162168 7rq9:15 (2.6) BS03 ZN ? GO:0003735 ... P80339 34707295
    162169 7rq9:16 (2.6) BS02 MG ? GO:0000049 ... P35871 34707295
    162170 7rq9:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 34707295
    162171 7rq9:17 (2.6) BS02 MG ? GO:0003735 ... P80340 34707295
    162172 7rq9:17 (2.6) BS03 MG ? GO:0003735 ... P80340 34707295
    162173 7rq9:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 34707295
    162174 7rq9:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 34707295
    162175 7rq9:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 34707295
    162176 7rq9:18 (2.6) BS05 MG ? GO:0003735 ... Q5SKU1 34707295
    162177 7rq9:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 34707295
    162178 7rq9:1D (2.6) BS03 MG ? GO:0002181 ... P60405 34707295
    162179 7rq9:1D (2.6) BS04 MG ? GO:0002181 ... P60405 34707295
    162180 7rq9:1D (2.6) BS05 MG ? GO:0002181 ... P60405 34707295
    162181 7rq9:1D (2.6) BS06 MG ? GO:0002181 ... P60405 34707295
    162182 7rq9:1D (2.6) BS07 MG ? GO:0002181 ... P60405 34707295
    162183 7rq9:1D (2.6) BS08 MG ? GO:0002181 ... P60405 34707295
    162184 7rq9:1D (2.6) BS09 MG ? GO:0002181 ... P60405 34707295
    162185 7rq9:1D (2.6) BS10 MG ? GO:0002181 ... P60405 34707295
    162186 7rq9:1D (2.6) BS11 MG ? GO:0002181 ... P60405 34707295
    162187 7rq9:1D (2.6) BS12 MG ? GO:0002181 ... P60405 34707295
    162188 7rq9:1D (2.6) BS13 MG ? GO:0002181 ... P60405 34707295
    162189 7rq9:1D (2.6) BS14 MG ? GO:0002181 ... P60405 34707295
    162190 7rq9:1D (2.6) BS15 MG ? GO:0002181 ... P60405 34707295
    162191 7rq9:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 34707295
    162192 7rq9:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 34707295
    162193 7rq9:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 34707295
    162194 7rq9:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 34707295
    162195 7rq9:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 34707295
    162196 7rq9:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 34707295
    162197 7rq9:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 34707295
    162198 7rq9:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 34707295
    162199 7rq9:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 34707295
    162200 7rq9:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 34707295
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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