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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16001 1ut5:A (2.75) BS01 MN 3.1.11.-
    3.1.11.3
    GO:0003677 ... P06229 15077103
    16002 1utj:A (1.83) BS02 CA 3.4.21.4 GO:0004252 ... P35031 15044735
    16003 1utk:A (1.53) BS01 CA 3.4.21.4 GO:0004252 ... P35031 15044735
    16004 1utl:M (1.7) BS02 CA 3.4.21.4 GO:0004252 ... P35031 15044735
    16005 1utm:A (1.5) BS02 CA 3.4.21.4 GO:0004252 ... P35031 15044735
    16006 1utn:A (1.15) BS03 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    16007 1uto:A (1.15) BS02 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    16008 1utp:A (1.3) BS02 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    16009 1utq:A (1.15) BS01 CA 3.4.21.4 GO:0004252 ... P00760 15044735
    16010 1utt:A (2.2) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 15289103
    16011 1utt:A (2.2) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 15289103
    16012 1utt:A (2.2) BS04 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    16013 1utt:A (2.2) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    16014 1utt:A (2.2) BS06 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    16015 1utz:A (2.5) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 15289103
    16016 1utz:A (2.5) BS04 ZN 3.4.24.65 GO:0004222 ... P39900 15289103
    16017 1utz:A (2.5) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    16018 1utz:A (2.5) BS06 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    16019 1utz:B (2.5) BS03 ZN 3.4.24.65 GO:0004222 ... P39900 15289103
    16020 1utz:B (2.5) BS04 ZN 3.4.24.65 GO:0004222 ... P39900 15289103
    16021 1utz:B (2.5) BS05 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    16022 1utz:B (2.5) BS06 CA 3.4.24.65 GO:0004222 ... P39900 15289103
    16023 1uuf:A (1.76) BS01 ZN 1.1.1.2 GO:0008106 ... P75691 N/A
    16024 1uuf:A (1.76) BS02 ZN 1.1.1.2 GO:0008106 ... P75691 N/A
    16025 1uup:A (2.6) BS01 ZN ? GO:0005576 ... P0DJY7 15295110
    16026 1uup:B (2.6) BS01 ZN ? GO:0005576 ... P0DJY7 15295110
    16027 1uup:C (2.6) BS01 ZN ? GO:0005576 ... P0DJY7 15295110
    16028 1uup:D (2.6) BS01 ZN ? GO:0005576 ... P0DJY7 15295110
    16029 1uut:A (2.0) BS02 MG ? N/A Q9YJC1 14967147
    16030 1uut:B (2.0) BS02 MG ? N/A Q9YJC1 14967147
    16031 1uuv:A (1.65) BS04 FE 1.14.12.12 GO:0005506 ... P0A110 15942729
    16032 1uuw:A (2.3) BS02 FE 1.14.12.12 GO:0005506 ... P0A110 15942729
    16033 1uv0:A (1.78) BS01 ZN ? GO:0005179 ... Q06141 10417404
    16034 1uv4:A (1.5) BS01 CA 3.2.1.99 GO:0004553 ... P94522 15708971
    16035 1uvh:A (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    16036 1uvh:B (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    16037 1uvh:C (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    16038 1uvh:D (2.8) BS01 FE 1.16.-.- GO:0003677 ... P0C558 16030020
    16039 1uvi:A (2.15) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16040 1uvi:B (2.15) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16041 1uvi:C (2.15) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16042 1uvj:A (1.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16043 1uvj:B (1.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16044 1uvj:C (1.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16045 1uvk:A (2.45) BS01 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16046 1uvk:C (2.45) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16047 1uvk:E (2.45) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16048 1uvl:A (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16049 1uvl:C (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16050 1uvl:E (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16051 1uvm:A (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16052 1uvm:B (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16053 1uvm:C (2.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16054 1uvn:A (3.0) BS04 CA 2.7.7.48 GO:0000166 ... P11124 14962391
    16055 1uvn:A (3.0) BS05 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16056 1uvn:C (3.0) BS04 CA 2.7.7.48 GO:0000166 ... P11124 14962391
    16057 1uvn:C (3.0) BS05 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16058 1uvn:E (3.0) BS04 CA 2.7.7.48 GO:0000166 ... P11124 14962391
    16059 1uvn:E (3.0) BS05 MN 2.7.7.48 GO:0000166 ... P11124 14962391
    16060 1uvo:A (1.85) BS01 CD 3.4.21.36 GO:0004252 ... P00772 15840915
    16061 1uvp:A (1.85) BS01 CD 3.4.21.36 GO:0004252 ... P00772 15840915
    16062 1uvq:B (1.8) BS03 ZN ? GO:0006955 ... P01920 14769912
    16063 1uw0:A (-1.00) BS01 ZN 6.5.1.1 GO:0003677 ... P49916 15288782
    16064 1uw1:A (1.94) BS02 ZN N/A N/A N/A 15024384
    16065 1uw8:A (2.0) BS01 MN 4.1.1.2 GO:0005737 ... O34714 14871895
    16066 1uw8:A (2.0) BS02 MN 4.1.1.2 GO:0005737 ... O34714 14871895
    16067 1uw9:A (2.05) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16068 1uw9:B (2.05) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16069 1uw9:E (2.05) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16070 1uw9:H (2.05) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16071 1uw9:K (2.05) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16072 1uw9:O (2.05) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16073 1uw9:R (2.05) BS03 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16074 1uw9:V (2.05) BS03 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16075 1uwa:A (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16076 1uwa:B (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16077 1uwa:E (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16078 1uwa:H (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16079 1uwa:K (2.3) BS01 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16080 1uwa:O (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16081 1uwa:R (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16082 1uwa:V (2.3) BS02 MG 4.1.1.39 GO:0000287 ... P00877 15628851
    16083 1uww:A (1.4) BS01 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    16084 1uww:A (1.4) BS02 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    16085 1uww:A (1.4) BS03 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    16086 1uww:B (1.4) BS01 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    16087 1uww:B (1.4) BS02 CA 3.2.1.4 GO:0008810 ... P06564 15136030
    16088 1uwy:A (3.0) BS01 ZN 3.4.17.12 GO:0004180 ... P14384 15066430
    16089 1uwz:A (1.99) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16090 1uwz:B (1.99) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16091 1ux0:A (1.99) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16092 1ux0:B (1.99) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16093 1ux1:A (2.36) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16094 1ux1:B (2.36) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16095 1ux1:C (2.36) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16096 1ux1:D (2.36) BS02 ZN 3.5.4.5 GO:0003824 ... P19079 15147186
    16097 1ux6:A (1.9) BS01 CA ? GO:0005509 ... P07996 15014436
    16098 1ux6:A (1.9) BS02 CA ? GO:0005509 ... P07996 15014436
    16099 1ux6:A (1.9) BS03 CA ? GO:0005509 ... P07996 15014436
    16100 1ux6:A (1.9) BS04 CA ? GO:0005509 ... P07996 15014436
    16101 1ux6:A (1.9) BS05 CA ? GO:0005509 ... P07996 15014436
    16102 1ux6:A (1.9) BS06 CA ? GO:0005509 ... P07996 15014436
    16103 1ux6:A (1.9) BS07 CA ? GO:0005509 ... P07996 15014436
    16104 1ux6:A (1.9) BS08 CA ? GO:0005509 ... P07996 15014436
    16105 1ux6:A (1.9) BS09 CA ? GO:0005509 ... P07996 15014436
    16106 1ux6:A (1.9) BS10 CA ? GO:0005509 ... P07996 15014436
    16107 1ux6:A (1.9) BS11 CA ? GO:0005509 ... P07996 15014436
    16108 1ux6:A (1.9) BS12 CA ? GO:0005509 ... P07996 15014436
    16109 1ux6:A (1.9) BS13 CA ? GO:0005509 ... P07996 15014436
    16110 1ux6:A (1.9) BS14 CA ? GO:0005509 ... P07996 15014436
    16111 1ux6:A (1.9) BS15 CA ? GO:0005509 ... P07996 15014436
    16112 1ux6:A (1.9) BS16 CA ? GO:0005509 ... P07996 15014436
    16113 1ux7:A (1.5) BS03 CA 3.2.1.55 GO:0030246 ... P45796 15242594
    16114 1ux7:A (1.5) BS04 CA 3.2.1.55 GO:0030246 ... P45796 15242594
    16115 1uxa:A (1.5) BS02 ZN ? GO:0007155 ... Q64823 15220447
    16116 1uxa:B (1.5) BS02 ZN ? GO:0007155 ... Q64823 15220447
    16117 1uxb:A (1.75) BS02 ZN ? GO:0007155 ... Q64822 15220447
    16118 1uxb:B (1.75) BS02 ZN ? GO:0007155 ... Q64822 15220447
    16119 1uxe:A (2.0) BS01 ZN ? GO:0007155 ... Q64823 15220447
    16120 1uxe:B (2.0) BS01 ZN ? GO:0007155 ... Q64823 15220447
    16121 1uxl:A (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16122 1uxl:A (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16123 1uxl:B (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16124 1uxl:B (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16125 1uxl:C (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16126 1uxl:C (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16127 1uxl:D (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16128 1uxl:D (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16129 1uxl:E (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16130 1uxl:E (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16131 1uxl:F (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16132 1uxl:F (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16133 1uxl:G (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16134 1uxl:G (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16135 1uxl:H (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16136 1uxl:H (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16137 1uxl:I (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16138 1uxl:I (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16139 1uxl:J (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16140 1uxl:J (1.6) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16141 1uxm:A (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16142 1uxm:A (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16143 1uxm:B (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16144 1uxm:B (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16145 1uxm:C (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16146 1uxm:C (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16147 1uxm:D (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16148 1uxm:D (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16149 1uxm:E (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16150 1uxm:E (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16151 1uxm:F (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16152 1uxm:F (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16153 1uxm:G (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16154 1uxm:G (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16155 1uxm:H (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16156 1uxm:H (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16157 1uxm:I (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16158 1uxm:I (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16159 1uxm:J (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16160 1uxm:J (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16161 1uxm:K (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16162 1uxm:K (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16163 1uxm:L (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    16164 1uxm:L (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 15056757
    16165 1uxx:X (1.6) BS06 CA 3.2.1.8 GO:0030246 ... O52780 15010454
    16166 1uy0:A (1.65) BS03 CA ? GO:0030246 ... O07653 15010454
    16167 1uy0:A (1.65) BS04 CA ? GO:0030246 ... O07653 15010454
    16168 1uy0:B (1.65) BS04 CA ? GO:0030246 ... O07653 15010454
    16169 1uy0:B (1.65) BS05 CA ? GO:0030246 ... O07653 15010454
    16170 1uy1:A (1.8) BS01 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    16171 1uy2:A (1.7) BS02 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    16172 1uy3:A (1.89) BS04 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    16173 1uy4:A (1.69) BS04 CA 3.2.1.8 GO:0030246 ... Q8GJ44 15223327
    16174 1uyx:A (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    16175 1uyx:A (1.47) BS05 CA ? GO:0030246 ... O07653 15010454
    16176 1uyx:B (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    16177 1uyx:B (1.47) BS05 CA ? GO:0030246 ... O07653 15010454
    16178 1uyy:A (1.47) BS03 CA ? GO:0030246 ... O07653 15010454
    16179 1uyy:A (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    16180 1uyy:B (1.47) BS04 CA ? GO:0030246 ... O07653 15010454
    16181 1uyy:B (1.47) BS05 CA ? GO:0030246 ... O07653 15010454
    16182 1uyz:A (1.6) BS02 CA ? GO:0030246 ... O07653 15010454
    16183 1uyz:A (1.6) BS03 CA ? GO:0030246 ... O07653 15010454
    16184 1uyz:B (1.6) BS02 CA ? GO:0030246 ... O07653 15010454
    16185 1uyz:B (1.6) BS03 CA ? GO:0030246 ... O07653 15010454
    16186 1uz0:A (2.0) BS04 CA ? GO:0030246 ... O07653 15010454
    16187 1uz0:A (2.0) BS05 CA ? GO:0030246 ... O07653 15010454
    16188 1uzd:A (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16189 1uzd:B (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16190 1uzd:E (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16191 1uzd:H (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16192 1uzd:K (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16193 1uzd:O (2.4) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16194 1uzd:R (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16195 1uzd:V (2.4) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16196 1uze:A (1.82) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 15236580
    16197 1uzf:A (2.0) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 15236580
    16198 1uzh:A (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16199 1uzh:B (2.2) BS02 MG 4.1.1.39 GO:0000287 ... P00877 16026157
    16200 1uzh:E (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00877 16026157

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218