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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    159801 7pmv:B (3.7) BS03 CA ? N/A P04275 35377815
    159802 7pmv:D (3.7) BS01 CA ? N/A P04275 35377815
    159803 7pmv:D (3.7) BS02 CA ? N/A P04275 35377815
    159804 7pmv:D (3.7) BS03 CA ? N/A P04275 35377815
    159805 7pmv:E (3.7) BS01 CA ? N/A P04275 35377815
    159806 7pmv:E (3.7) BS02 CA ? N/A P04275 35377815
    159807 7pmv:E (3.7) BS03 CA ? N/A P04275 35377815
    159808 7pmz:A (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159809 7pmz:B (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159810 7pmz:D (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159811 7pmz:E (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159812 7pmz:F (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159813 7pmz:G (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159814 7pmz:H (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159815 7pmz:K (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159816 7pmz:N (2.03) BS03 MG 1.1.1.205 GO:0000166 ... Q9L0I7 35481629
    159817 7pn4:A (2.05) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 36583658
    159818 7pn5:A (1.82) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 36583658
    159819 7pn6:A (1.5) BS01 MG 1.11.2.1 GO:0004601 ... B9W4V6 36583658
    159820 7pn7:A (1.65) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 36583658
    159821 7pn8:A (1.5) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 36583658
    159822 7pn9:A (1.85) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 36583658
    159823 7pna:A (1.9) BS02 MG 1.11.2.1 GO:0004601 ... B9W4V6 36583658
    159824 7pnd:A (1.85) BS01 ZN ? GO:0006508 ... O86049 36173175
    159825 7pnd:B (1.85) BS01 ZN ? GO:0006508 ... O86049 36173175
    159826 7pnf:B (4.35) BS01 CA ? N/A P04275 35377815
    159827 7pnf:B (4.35) BS02 CA ? N/A P04275 35377815
    159828 7pnf:B (4.35) BS03 CA ? N/A P04275 35377815
    159829 7pnf:D (4.35) BS01 CA ? N/A P04275 35377815
    159830 7pnf:D (4.35) BS02 CA ? N/A P04275 35377815
    159831 7pnf:D (4.35) BS03 CA ? N/A P04275 35377815
    159832 7pnk:D (3.61) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159833 7pnk:a (3.61) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159834 7pnk:d (3.61) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159835 7pnt:B (3.19) BS02 MG ? GO:0003735 ... Q924T2 35676484
    159836 7pnt:O (3.19) BS02 ZN ? GO:0003735 ... Q99N84 35676484
    159837 7pnu:B (3.06) BS02 MG ? GO:0003735 ... Q924T2 35676484
    159838 7pnu:O (3.06) BS02 ZN ? GO:0003735 ... Q99N84 35676484
    159839 7pnv:B (3.06) BS02 MG ? GO:0003735 ... Q924T2 35676484
    159840 7pnv:O (3.06) BS02 ZN ? GO:0003735 ... Q99N84 35676484
    159841 7pnw:B (3.09) BS02 MG ? GO:0003735 ... Q924T2 35676484
    159842 7pnw:O (3.09) BS02 ZN ? GO:0003735 ... Q99N84 35676484
    159843 7pnx:B (2.76) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    159844 7pnx:O (2.76) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    159845 7pny:B (3.06) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    159846 7pny:O (3.06) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    159847 7pnz:B (3.09) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    159848 7pnz:O (3.09) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    159849 7po0:B (2.9) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    159850 7po0:O (2.9) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    159851 7po1:B (2.92) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    159852 7po1:O (2.92) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    159853 7po2:7 (3.09) BS05 MG ? GO:0003723 ... P46199 35676484
    159854 7po2:B (3.09) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    159855 7po2:O (3.09) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    159856 7po3:B (2.92) BS02 MG ? GO:0003735 ... Q9Y399 35676484
    159857 7po3:O (2.92) BS02 ZN ? GO:0003735 ... Q9Y676 35676484
    159858 7po4:0 (2.56) BS02 ZN ? GO:0003723 ... Q9BYC8 35676484
    159859 7po7:H (2.31) BS01 CA 3.1.3.21
    3.1.3.48    		 GO:0000121 ... Q8CHP8 36369173
    159860 7po9:A (1.9) BS01 ZN ? GO:0005634 ... Q9VHM3 35580610
    159861 7po9:B (1.9) BS01 ZN ? GO:0005634 ... Q9VHM3 35580610
    159862 7pod:A (1.5) BS03 CA 3.2.1.96 GO:0004040 ... P59206 37418323
    159863 7pog:A (2.83) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... P16154 34817920
    159864 7poh:A (2.85) BS01 ZN ? N/A P07664 35580610
    159865 7poh:B (2.85) BS01 ZN ? N/A P07664 35580610
    159866 7pok:A (1.8) BS01 ZN ? GO:0005634 ... Q95RQ8 35580610
    159867 7pok:B (1.8) BS01 ZN ? GO:0005634 ... Q95RQ8 35580610
    159868 7pok:C (1.8) BS01 ZN ? GO:0005634 ... Q95RQ8 35580610
    159869 7pok:D (1.8) BS01 ZN ? GO:0005634 ... Q95RQ8 35580610
    159870 7pol:A (1.95) BS01 ZN ? GO:0006508 ... O86049 36173175
    159871 7pom:A (1.98) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 35008553
    159872 7pom:B (1.98) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 35008553
    159873 7pom:C (1.98) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 35008553
    159874 7pom:D (1.98) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 35008553
    159875 7poo:A (2.7) BS01 ZN ? GO:0006508 ... O86049 36173175
    159876 7poo:B (2.7) BS01 ZN ? GO:0006508 ... O86049 36173175
    159877 7poq:A (1.85) BS01 ZN ? GO:0006508 ... O86049 36173175
    159878 7poq:B (1.85) BS01 ZN ? GO:0006508 ... O86049 36173175
    159879 7pou:A (2.03) BS01 ZN ? GO:0006508 ... O86049 36173175
    159880 7pou:B (2.03) BS01 ZN ? GO:0006508 ... O86049 36173175
    159881 7pov:A (3.8) BS01 CA ? N/A Q02817 35377815
    159882 7pov:A (3.8) BS02 CA ? N/A Q02817 35377815
    159883 7pov:B (3.8) BS01 CA ? N/A Q02817 35377815
    159884 7pov:B (3.8) BS02 CA ? N/A Q02817 35377815
    159885 7pov:C (3.8) BS01 CA ? N/A Q02817 35377815
    159886 7pov:D (3.8) BS01 CA ? N/A Q02817 35377815
    159887 7pow:A (2.51) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    159888 7pow:A (2.51) BS03 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    159889 7pow:B (2.51) BS02 CA 2.7.8.8 GO:0003882 ... Q58609 N/A
    159890 7pow:B (2.51) BS03 MG 2.7.8.8 GO:0003882 ... Q58609 N/A
    159891 7poy:A (1.75) BS01 FE 1.21.3.1 GO:0005506 ... P05326 35835215
    159892 7poz:A (1.9) BS01 ZN 3.5.1.98 GO:0000122 ... A5H660 35970392
    159893 7pp0:A (1.73) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 35050549
    159894 7pp0:A (1.73) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 35050549
    159895 7pp4:d (3.84) BS01 ZN 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    159896 7pp4:d (3.84) BS02 ZN 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    159897 7pp4:d (3.84) BS03 MG 2.7.7.6 GO:0000287 ... P9WGY7 N/A
    159898 7pp6:A (3.4) BS01 CA ? N/A Q02817 35377815
    159899 7pp6:A (3.4) BS02 CA ? N/A Q02817 35377815
    159900 7pp6:B (3.4) BS01 CA ? N/A Q02817 35377815
    159901 7pp6:B (3.4) BS02 CA ? N/A Q02817 35377815
    159902 7pp6:B (3.4) BS03 CA ? N/A Q02817 35377815
    159903 7pp6:C (3.4) BS01 CA ? N/A Q02817 35377815
    159904 7pp6:D (3.4) BS01 CA ? N/A Q02817 35377815
    159905 7pp6:D (3.4) BS02 CA ? N/A Q02817 35377815
    159906 7pp6:D (3.4) BS03 CA ? N/A Q02817 35377815
    159907 7pp6:E (3.4) BS01 CA ? N/A Q02817 35377815
    159908 7pp6:E (3.4) BS02 CA ? N/A Q02817 35377815
    159909 7pp6:G (3.4) BS01 CA ? N/A Q02817 35377815
    159910 7pp7:A (2.05) BS01 FE 1.14.19.26 GO:0006631 ... Q41510 34893899
    159911 7pp7:A (2.05) BS02 FE 1.14.19.26 GO:0006631 ... Q41510 34893899
    159912 7pp9:A (2.34) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 35008553
    159913 7pp9:B (2.34) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 35008553
    159914 7pp9:C (2.34) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 35008553
    159915 7pp9:D (2.34) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 35008553
    159916 7ppj:A (3.44) BS01 ZN ? GO:0005524 ... Q08AF3 35037067
    159917 7ppo:B (2.91) BS01 CA ? GO:0000086 ... P0DP24 34702826
    159918 7ppp:A (2.9) BS01 ZN ? GO:0005634 ... A0A5F9DAT3 35580610
    159919 7ppp:B (2.9) BS01 ZN ? GO:0005634 ... A0A5F9DAT3 35580610
    159920 7ppt:A (1.42) BS01 FE ? GO:0016491 ... F9VPE5 35102889
    159921 7ppt:A (1.42) BS02 FE ? GO:0016491 ... F9VPE5 35102889
    159922 7ppt:B (1.42) BS01 FE ? GO:0016491 ... F9VPE5 35102889
    159923 7ppt:B (1.42) BS02 FE ? GO:0016491 ... F9VPE5 35102889
    159924 7ppu:A (1.34) BS01 FE ? GO:0016491 ... F9VPE5 35102889
    159925 7ppu:A (1.34) BS02 FE ? GO:0016491 ... F9VPE5 35102889
    159926 7ppu:B (1.34) BS01 FE ? GO:0016491 ... F9VPE5 35102889
    159927 7ppu:B (1.34) BS02 FE ? GO:0016491 ... F9VPE5 35102889
    159928 7ppv:A (1.36) BS01 FE ? GO:0016491 ... F9VPE5 35102889
    159929 7ppv:A (1.36) BS02 FE ? GO:0016491 ... F9VPE5 35102889
    159930 7ppv:B (1.36) BS01 FE ? GO:0016491 ... F9VPE5 35102889
    159931 7ppv:B (1.36) BS02 FE ? GO:0016491 ... F9VPE5 35102889
    159932 7pq9:AAA (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159933 7pq9:AAA (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    159934 7pq9:BBB (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159935 7pq9:BBB (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    159936 7pq9:CCC (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159937 7pq9:CCC (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    159938 7pq9:DDD (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159939 7pq9:DDD (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    159940 7pq9:DDD (2.8) BS03 CA N/A GO:0003700 ... N/A 37378428
    159941 7pq9:EEE (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159942 7pq9:FFF (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159943 7pq9:GGG (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159944 7pq9:GGG (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    159945 7pq9:HHH (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159946 7pq9:HHH (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    159947 7pq9:III (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159948 7pq9:III (2.8) BS02 CA N/A GO:0003700 ... N/A 37378428
    159949 7pq9:JJJ (2.8) BS01 CA N/A GO:0003700 ... N/A 37378428
    159950 7pqc:B (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159951 7pqc:D (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159952 7pqc:F (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159953 7pqc:H (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159954 7pqc:J (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159955 7pqc:L (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159956 7pqc:N (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159957 7pqd:L (2.9) BS09 FE N/A GO:0009772 ... N/A 34622934
    159958 7pqd:M (2.9) BS06 FE ? GO:0009772 ... Q3J1A6 34622934
    159959 7pqd:l (2.9) BS11 FE N/A GO:0009772 ... N/A 34622934
    159960 7pqd:m (2.9) BS08 FE ? GO:0009772 ... Q3J1A6 34622934
    159961 7pqe:B (3.7) BS01 CA ? GO:0000086 ... P0DP24 34702826
    159962 7pqp:B (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159963 7pqp:F (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159964 7pqp:H (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159965 7pqp:J (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159966 7pqp:L (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159967 7pqp:N (4.1) BS02 MG 3.6.5.- GO:0000226 ... Q2XVP4 34963892
    159968 7pqr:A (1.3) BS01 CU 3.2.1.4 GO:0004497 ... A0A0S2GKZ1 36071795
    159969 7pqv:A (2.13) BS02 CA 2.7.12.2 GO:0004672 ... Q02750 35195996
    159970 7pqv:A (2.13) BS03 MG 2.7.12.2 GO:0004672 ... Q02750 35195996
    159971 7pr1:A (2.81) BS02 MG ? GO:0005524 ... G0SBE6 35896548
    159972 7pr1:B (2.81) BS03 MG ? GO:0005524 ... G0SBE6 35896548
    159973 7pr3:A (2.37) BS04 ZN ? GO:0005515 ... P00044 35529063
    159974 7pr3:A (2.37) BS05 ZN ? GO:0005515 ... P00044 35529063
    159975 7pr3:B (2.37) BS04 ZN ? GO:0005515 ... P00044 35529063
    159976 7pr3:B (2.37) BS05 ZN ? GO:0005515 ... P00044 35529063
    159977 7pr3:C (2.37) BS05 ZN ? GO:0005515 ... P00044 35529063
    159978 7pr3:C (2.37) BS06 ZN ? GO:0005515 ... P00044 35529063
    159979 7pr3:D (2.37) BS05 ZN ? GO:0005515 ... P00044 35529063
    159980 7pr5:A (1.94) BS03 ZN ? GO:0030246 ... A0A0S4TLR1 35529063
    159981 7pr5:B (1.94) BS03 ZN ? GO:0030246 ... A0A0S4TLR1 35529063
    159982 7pr5:D (1.94) BS03 ZN ? GO:0030246 ... A0A0S4TLR1 35529063
    159983 7pr5:E (1.94) BS04 ZN ? GO:0030246 ... A0A0S4TLR1 35529063
    159984 7pr5:F (1.94) BS01 ZN ? GO:0030246 ... A0A0S4TLR1 35529063
    159985 7pr5:H (1.94) BS02 ZN ? GO:0030246 ... A0A0S4TLR1 35529063
    159986 7pr5:J (1.94) BS03 ZN ? GO:0030246 ... A0A0S4TLR1 35529063
    159987 7prc:L (2.65) BS06 FE2 ? GO:0009772 ... P06009 10024457
    159988 7prc:M (2.65) BS04 FE2 ? GO:0009772 ... P06010 10024457
    159989 7prg:A (1.85) BS01 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159990 7prg:A (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159991 7prg:B (1.85) BS01 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159992 7prg:B (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159993 7prg:C (1.85) BS01 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159994 7prg:C (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159995 7prg:D (1.85) BS02 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159996 7prg:D (1.85) BS03 CA ? GO:0030246 ... A0A069Q9V4 35017516
    159997 7pri:AAA (1.679) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35234146
    159998 7pri:BBB (1.679) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35234146
    159999 7prj:A (1.2) BS01 ZN 3.4.21.38 N/A P00748 N/A
    160000 7prj:A (1.2) BS02 ZN 3.4.21.38 N/A P00748 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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