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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    159601 7pjy:6 (3.1) BS02 ZN ? GO:0002181 ... P0A7M9 34635670
    159602 7pjy:C (3.1) BS02 MG ? GO:0000027 ... P60422 34635670
    159603 7pjy:M (3.1) BS03 MG ? GO:0000027 ... P0ADY7 34635670
    159604 7pjy:O (3.1) BS03 MG ? GO:0002181 ... P0C018 34635670
    159605 7pjz:6 (6.0) BS02 ZN N/A GO:0003735 ... N/A 34635670
    159606 7pk8:A (2.3) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    159607 7pk9:A (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159608 7pk9:A (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159609 7pk9:B (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159610 7pk9:B (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159611 7pk9:C (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159612 7pk9:C (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159613 7pk9:D (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159614 7pk9:D (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159615 7pk9:E (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159616 7pk9:E (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159617 7pk9:F (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159618 7pk9:F (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159619 7pk9:G (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159620 7pk9:G (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159621 7pk9:H (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159622 7pk9:H (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159623 7pk9:I (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159624 7pk9:I (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159625 7pk9:J (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159626 7pk9:J (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159627 7pkb:A (3.2) BS01 CA ? GO:0001849 ... P02741 34975846
    159628 7pkb:A (3.2) BS02 CA ? GO:0001849 ... P02741 34975846
    159629 7pkb:B (3.2) BS01 CA ? GO:0001849 ... P02741 34975846
    159630 7pkb:B (3.2) BS02 CA ? GO:0001849 ... P02741 34975846
    159631 7pkb:C (3.2) BS01 CA ? GO:0001849 ... P02741 34975846
    159632 7pkb:C (3.2) BS02 CA ? GO:0001849 ... P02741 34975846
    159633 7pkb:D (3.2) BS01 CA ? GO:0001849 ... P02741 34975846
    159634 7pkb:D (3.2) BS02 CA ? GO:0001849 ... P02741 34975846
    159635 7pkb:E (3.2) BS01 CA ? GO:0001849 ... P02741 34975846
    159636 7pkb:E (3.2) BS02 CA ? GO:0001849 ... P02741 34975846
    159637 7pkd:A (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159638 7pkd:A (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159639 7pkd:B (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159640 7pkd:B (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159641 7pkd:C (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159642 7pkd:C (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159643 7pkd:D (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159644 7pkd:D (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159645 7pkd:E (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159646 7pkd:E (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159647 7pkd:F (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159648 7pkd:F (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159649 7pkd:G (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159650 7pkd:G (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159651 7pkd:H (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159652 7pkd:H (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159653 7pkd:I (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159654 7pkd:I (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159655 7pkd:J (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159656 7pkd:J (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159657 7pke:A (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159658 7pke:A (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159659 7pke:B (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159660 7pke:B (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159661 7pke:C (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159662 7pke:C (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159663 7pke:D (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159664 7pke:D (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159665 7pke:E (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159666 7pke:E (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159667 7pkf:A (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159668 7pkf:A (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159669 7pkf:B (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159670 7pkf:B (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159671 7pkf:C (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159672 7pkf:C (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159673 7pkf:D (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159674 7pkf:D (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159675 7pkf:E (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159676 7pkf:E (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159677 7pkf:F (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159678 7pkf:F (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159679 7pkf:G (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159680 7pkf:G (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159681 7pkf:H (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159682 7pkf:H (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159683 7pkf:I (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159684 7pkf:I (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159685 7pkf:J (2.8) BS01 CA ? GO:0001849 ... P02741 34975846
    159686 7pkf:J (2.8) BS02 CA ? GO:0001849 ... P02741 34975846
    159687 7pkg:A (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159688 7pkg:A (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159689 7pkg:B (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159690 7pkg:B (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159691 7pkg:C (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159692 7pkg:C (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159693 7pkg:D (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159694 7pkg:D (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159695 7pkg:E (3.3) BS01 CA ? GO:0001849 ... P02741 34975846
    159696 7pkg:E (3.3) BS02 CA ? GO:0001849 ... P02741 34975846
    159697 7pkh:A (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159698 7pkh:A (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159699 7pkh:B (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159700 7pkh:B (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159701 7pkh:C (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159702 7pkh:C (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159703 7pkh:D (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159704 7pkh:D (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159705 7pkh:E (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159706 7pkh:E (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159707 7pkh:F (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159708 7pkh:F (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159709 7pkh:G (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159710 7pkh:G (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159711 7pkh:H (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159712 7pkh:H (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159713 7pkh:I (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159714 7pkh:I (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159715 7pkh:J (3.0) BS01 CA ? GO:0001849 ... P02741 34975846
    159716 7pkh:J (3.0) BS02 CA ? GO:0001849 ... P02741 34975846
    159717 7pkk:A (2.55) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    159718 7pkm:A (2.1) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    159719 7pks:A (3.6) BS04 MG 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    159720 7pks:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    159721 7pks:A (3.6) BS06 ZN 2.7.7.6 GO:0000428 ... A0A7M4DUC2 34762484
    159722 7pks:B (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... A0A0B8RVL1 34762484
    159723 7pks:C (3.6) BS01 ZN ? GO:0003677 ... A0A481DF93 34762484
    159724 7pks:I (3.6) BS01 ZN ? GO:0000428 ... P60899 34762484
    159725 7pks:I (3.6) BS02 ZN ? GO:0000428 ... P60899 34762484
    159726 7pks:J (3.6) BS01 ZN ? GO:0000428 ... A0A7K6NXI9 34762484
    159727 7pks:L (3.6) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 34762484
    159728 7pks:k (3.6) BS01 ZN 3.1.27.- GO:0004521 ... Q5TA45 34762484
    159729 7pks:k (3.6) BS02 ZN 3.1.27.- GO:0004521 ... Q5TA45 34762484
    159730 7pks:q (3.6) BS01 MN 3.1.3.16 GO:0000159 ... P67775 34762484
    159731 7pks:q (3.6) BS02 MN 3.1.3.16 GO:0000159 ... P67775 34762484
    159732 7pkt:y (3.0) BS05 ZN ? GO:0003735 ... A8JGW4 34887394
    159733 7pl3:A (1.8) BS01 CA 3.2.1.96 GO:0004040 ... P59205 37418323
    159734 7pl5:AAA (1.99) BS01 ZN 3.2.1.96 N/A P59206 37418323
    159735 7pl5:BBB (1.99) BS01 ZN 3.2.1.96 N/A P59206 37418323
    159736 7plb:A (1.73) BS01 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159737 7plb:B (1.73) BS01 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159738 7plc:A (2.15) BS04 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159739 7plc:B (2.15) BS02 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159740 7plc:C (2.15) BS04 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159741 7plc:D (2.15) BS03 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159742 7pld:A (1.7) BS01 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159743 7pld:B (1.7) BS05 FE2 3.1.1.110 GO:0004341 ... Q9A9Z1 34761460
    159744 7plf:AAA (1.461) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 35234146
    159745 7plf:BBB (1.461) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 35234146
    159746 7plm:A (2.9) BS05 CA 1.2.7.1 GO:0003824 ... P94692 35327633
    159747 7plm:A (2.9) BS06 MG 1.2.7.1 GO:0003824 ... P94692 35327633
    159748 7plm:B (2.9) BS05 CA 1.2.7.1 GO:0003824 ... P94692 35327633
    159749 7plm:B (2.9) BS06 MG 1.2.7.1 GO:0003824 ... P94692 35327633
    159750 7plo:2 (2.8) BS02 ZN 3.6.4.12 GO:0000727 ... P49736 34700328
    159751 7plo:2 (2.8) BS03 MG 3.6.4.12 GO:0000727 ... P49736 34700328
    159752 7plo:3 (2.8) BS04 MG 3.6.4.12 GO:0000727 ... P25205 34700328
    159753 7plo:4 (2.8) BS01 ZN 3.6.4.12 GO:0000727 ... P33991 34700328
    159754 7plo:5 (2.8) BS04 ZN 3.6.4.12 GO:0000727 ... P33992 34700328
    159755 7plo:6 (2.8) BS04 ZN 3.6.4.12 GO:0000727 ... Q14566 34700328
    159756 7plo:7 (2.8) BS03 ZN 3.6.4.12 GO:0000727 ... P33993 34700328
    159757 7plo:B (2.8) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000082 ... Q07864 34700328
    159758 7plo:T (2.8) BS01 ZN 2.3.2.27
    2.3.2.32    		 GO:0000165 ... P62877 34700328
    159759 7plp:A (1.4) BS01 CA ? N/A Q6N022 35099835
    159760 7plp:A (1.4) BS02 CA ? N/A Q6N022 35099835
    159761 7plp:A (1.4) BS03 CA ? N/A Q6N022 35099835
    159762 7plp:B (1.4) BS01 CA ? N/A Q6N022 35099835
    159763 7plp:B (1.4) BS02 CA ? N/A Q6N022 35099835
    159764 7plp:B (1.4) BS03 CA ? N/A Q6N022 35099835
    159765 7plr:AAA (2.64) BS02 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159766 7plr:AAA (2.64) BS03 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159767 7plr:AAA (2.64) BS04 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159768 7plr:BBB (2.64) BS01 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159769 7plr:BBB (2.64) BS02 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159770 7plr:DDD (2.64) BS02 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159771 7plr:DDD (2.64) BS03 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159772 7plr:GGG (2.64) BS02 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159773 7plr:GGG (2.64) BS03 MN 2.7.7.48
    3.1.-.-    		 N/A A5HC98 38656310
    159774 7pmk:2 (3.2) BS03 MG 3.6.4.12 GO:0000727 ... P29469 34700328
    159775 7pmk:2 (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P29469 34700328
    159776 7pmk:3 (3.2) BS03 MG 3.6.4.12 GO:0000727 ... P24279 34700328
    159777 7pmk:4 (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 34700328
    159778 7pmk:5 (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P29496 34700328
    159779 7pmk:6 (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 34700328
    159780 7pmk:7 (3.2) BS01 ZN 3.6.4.12 GO:0000727 ... P38132 34700328
    159781 7pmk:Q (3.2) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 34700328
    159782 7pmk:Q (3.2) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 34700328
    159783 7pmn:2 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P29469 34700328
    159784 7pmn:4 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 34700328
    159785 7pmn:5 (3.2) BS03 MG 3.6.4.12 GO:0000727 ... P29496 34700328
    159786 7pmn:5 (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P29496 34700328
    159787 7pmn:6 (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 34700328
    159788 7pmn:7 (3.2) BS01 ZN 3.6.4.12 GO:0000727 ... P38132 34700328
    159789 7pmn:Q (3.2) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 34700328
    159790 7pmn:Q (3.2) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 34700328
    159791 7pmo:D (2.1) BS01 MG ? GO:0005975 ... A7B6A6 34936658
    159792 7pmo:D (2.1) BS02 MG ? GO:0005975 ... A7B6A6 34936658
    159793 7pmo:D (2.1) BS03 CA ? GO:0005975 ... A7B6A6 34936658
    159794 7pmo:G (2.1) BS01 MG ? GO:0005975 ... A7B6A6 34936658
    159795 7pmo:G (2.1) BS02 CA ? GO:0005975 ... A7B6A6 34936658
    159796 7pmv:A (3.7) BS01 CA ? N/A P04275 35377815
    159797 7pmv:A (3.7) BS02 CA ? N/A P04275 35377815
    159798 7pmv:A (3.7) BS03 CA ? N/A P04275 35377815
    159799 7pmv:B (3.7) BS01 CA ? N/A P04275 35377815
    159800 7pmv:B (3.7) BS02 CA ? N/A P04275 35377815
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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