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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    159001 7p48:6 (2.9) BS07 MG N/A GO:0005524 ... N/A 35137182
    159002 7p49:E (2.05) BS02 ZN ? N/A P13747 35705051
    159003 7p49:G (2.05) BS02 ZN ? N/A P13747 35705051
    159004 7p4b:E (1.72) BS03 ZN ? N/A P13747 35705051
    159005 7p4b:G (1.72) BS03 ZN ? N/A P13747 35705051
    159006 7p4j:A (1.79) BS01 ZN 3.1.4.39 GO:0001953 ... Q64610 36623871
    159007 7p4j:A (1.79) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 36623871
    159008 7p4j:A (1.79) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 36623871
    159009 7p4j:A (1.79) BS06 CA 3.1.4.39 GO:0001953 ... Q64610 36623871
    159010 7p4l:A (2.3) BS01 CA ? N/A C0HM55 35794124
    159011 7p4l:A (2.3) BS02 CA ? N/A C0HM55 35794124
    159012 7p4l:A (2.3) BS03 CA ? N/A C0HM55 35794124
    159013 7p4l:A (2.3) BS04 CA ? N/A C0HM55 35794124
    159014 7p4l:A (2.3) BS05 CA ? N/A C0HM55 35794124
    159015 7p4l:A (2.3) BS06 CA ? N/A C0HM55 35794124
    159016 7p4l:B (2.3) BS01 CA ? N/A C0HM55 35794124
    159017 7p4l:B (2.3) BS02 CA ? N/A C0HM55 35794124
    159018 7p4l:B (2.3) BS03 CA ? N/A C0HM55 35794124
    159019 7p4l:B (2.3) BS04 CA ? N/A C0HM55 35794124
    159020 7p4l:B (2.3) BS05 CA ? N/A C0HM55 35794124
    159021 7p4l:B (2.3) BS06 CA ? N/A C0HM55 35794124
    159022 7p4l:B (2.3) BS07 CA ? N/A C0HM55 35794124
    159023 7p4l:B (2.3) BS08 CA ? N/A C0HM55 35794124
    159024 7p4l:C (2.3) BS01 CA ? N/A C0HM55 35794124
    159025 7p4l:C (2.3) BS02 CA ? N/A C0HM55 35794124
    159026 7p4l:C (2.3) BS03 CA ? N/A C0HM55 35794124
    159027 7p4l:C (2.3) BS04 CA ? N/A C0HM55 35794124
    159028 7p4l:C (2.3) BS05 CA ? N/A C0HM55 35794124
    159029 7p4l:C (2.3) BS06 CA ? N/A C0HM55 35794124
    159030 7p4l:C (2.3) BS07 CA ? N/A C0HM55 35794124
    159031 7p4o:A (1.69) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 36623871
    159032 7p4o:A (1.69) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 36623871
    159033 7p4o:A (1.69) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 36623871
    159034 7p4w:A (2.28) BS01 CA 3.2.1.1 GO:0004556 ... P0C1B3 35497656
    159035 7p56:A (1.735) BS01 CA ? GO:0042783 ... P26332 36943866
    159036 7p56:B (1.735) BS02 CA ? GO:0042783 ... P26332 36943866
    159037 7p5h:B (2.3) BS04 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159038 7p5h:E (2.3) BS04 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159039 7p5h:b (2.3) BS04 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159040 7p5h:e (2.3) BS04 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159041 7p5o:A (2.48) BS02 MG 5.4.2.2 GO:0000287 ... Q4WY53 N/A
    159042 7p5o:B (2.48) BS02 MG 5.4.2.2 GO:0000287 ... Q4WY53 N/A
    159043 7p5x:AD (3.2) BS03 ZN 2.7.7.6 GO:0000287 ... A0QS66 34851662
    159044 7p5x:AD (3.2) BS04 ZN 2.7.7.6 GO:0000287 ... A0QS66 34851662
    159045 7p5z:2 (3.3) BS04 ZN 3.6.4.12 GO:0000727 ... P29469 34963704
    159046 7p5z:4 (3.3) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 34963704
    159047 7p5z:5 (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 34963704
    159048 7p5z:6 (3.3) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 34963704
    159049 7p5z:7 (3.3) BS03 MG 3.6.4.12 GO:0000727 ... P38132 34963704
    159050 7p5z:7 (3.3) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 34963704
    159051 7p5z:A (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P29469 34963704
    159052 7p5z:C (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 34963704
    159053 7p5z:D (3.3) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 34963704
    159054 7p5z:E (3.3) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 34963704
    159055 7p5z:F (3.3) BS03 MG 3.6.4.12 GO:0000727 ... P38132 34963704
    159056 7p5z:F (3.3) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 34963704
    159057 7p5z:G (3.3) BS01 ZN ? GO:0000775 ... P32325 34963704
    159058 7p61:G (3.2) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159059 7p62:G (3.6) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159060 7p63:G (3.4) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159061 7p64:G (2.5) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159062 7p69:G (3.0) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159063 7p6z:2 (3.5) BS02 ZN ? GO:0003735 ... P52864 36171285
    159064 7p6z:M (3.5) BS02 ZN ? GO:0003735 ... Q50305 36171285
    159065 7p6z:Q (3.5) BS02 ZN ? GO:0003735 ... P75541 36171285
    159066 7p6z:y (3.5) BS02 ZN ? GO:0003735 ... P75238 36171285
    159067 7p6z:z (3.5) BS02 ZN ? GO:0003735 ... P78015 36171285
    159068 7p70:A (2.0) BS02 CA ? GO:0001525 ... P07355
    Q13884
    36115835
    159069 7p70:A (2.0) BS03 CA ? GO:0001525 ... P07355
    Q13884
    36115835
    159070 7p70:A (2.0) BS04 CA ? GO:0001525 ... P07355
    Q13884
    36115835
    159071 7p70:A (2.0) BS05 CA ? GO:0001525 ... P07355
    Q13884
    36115835
    159072 7p70:A (2.0) BS06 CA ? GO:0001525 ... P07355
    Q13884
    36115835
    159073 7p71:A (2.6) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159074 7p71:A (2.6) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159075 7p71:A (2.6) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159076 7p71:A (2.6) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159077 7p71:B (2.6) BS02 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159078 7p71:B (2.6) BS03 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159079 7p71:B (2.6) BS04 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159080 7p71:B (2.6) BS05 CA ? GO:0001525 ... P07355
    Q96QZ7
    36115835
    159081 7p72:A (2.15) BS02 CA ? GO:0001525 ... P07355
    Q96L92
    36115835
    159082 7p72:A (2.15) BS03 CA ? GO:0001525 ... P07355
    Q96L92
    36115835
    159083 7p72:A (2.15) BS04 CA ? GO:0001525 ... P07355
    Q96L92
    36115835
    159084 7p72:A (2.15) BS05 CA ? GO:0001525 ... P07355
    Q96L92
    36115835
    159085 7p72:A (2.15) BS06 CA ? GO:0001525 ... P07355
    Q96L92
    36115835
    159086 7p73:A (1.85) BS02 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159087 7p73:A (1.85) BS03 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159088 7p73:A (1.85) BS04 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159089 7p73:A (1.85) BS05 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159090 7p73:A (1.85) BS06 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159091 7p73:A (1.85) BS07 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159092 7p73:A (1.85) BS08 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159093 7p74:A (1.9) BS02 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159094 7p74:A (1.9) BS03 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159095 7p74:A (1.9) BS04 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159096 7p74:A (1.9) BS05 CA ? GO:0001525 ... P07355
    P57105
    36115835
    159097 7p7c:G (2.4) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159098 7p7e:G (2.7) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159099 7p7i:AAA (1.7) BS01 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159100 7p7i:BBB (1.7) BS01 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159101 7p7j:G (2.7) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159102 7p7k:G (3.1) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159103 7p7l:G (3.0) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159104 7p7m:G (3.2) BS05 CA 7.1.1.- GO:0003954 ... P33602 36104567
    159105 7p7n:CCC (1.8) BS03 AU 3.5.1.5 GO:0005737 ... P41020 34585201
    159106 7p7p:A (3.0) BS02 ZN 3.4.11.- GO:0002250 ... Q6P179 35178178
    159107 7p7p:B (3.0) BS02 ZN 3.4.11.- GO:0002250 ... Q6P179 35178178
    159108 7p7q:0 (2.4) BS05 MG N/A GO:0005524 ... N/A 35387982
    159109 7p7q:0 (2.4) BS06 MG N/A GO:0005524 ... N/A 35387982
    159110 7p7q:4 (2.4) BS02 ZN ? GO:0003735 ... Q836R0 35387982
    159111 7p7q:5 (2.4) BS02 ZN ? GO:0003735 ... P59628 35387982
    159112 7p7q:8 (2.4) BS02 ZN ? GO:0003735 ... Q839E1 35387982
    159113 7p7q:Q (2.4) BS02 MG ? GO:0003735 ... Q839D8 35387982
    159114 7p7q:n (2.4) BS02 MG ? GO:0000049 ... P59754 35387982
    159115 7p7q:o (2.4) BS02 ZN ? GO:0003735 ... Q839F1 35387982
    159116 7p7r:0 (2.9) BS05 MG N/A GO:0005524 ... N/A 35387982
    159117 7p7r:0 (2.9) BS06 MG N/A GO:0005524 ... N/A 35387982
    159118 7p7r:4 (2.9) BS02 ZN ? GO:0003735 ... Q836R0 35387982
    159119 7p7r:5 (2.9) BS02 ZN ? GO:0003735 ... P59628 35387982
    159120 7p7r:8 (2.9) BS02 ZN ? GO:0003735 ... Q839E1 35387982
    159121 7p7r:Q (2.9) BS02 MG ? GO:0003735 ... Q839D8 35387982
    159122 7p7r:n (2.9) BS02 MG ? GO:0000049 ... P59754 35387982
    159123 7p7r:o (2.9) BS02 ZN ? GO:0003735 ... Q839F1 35387982
    159124 7p7s:0 (3.0) BS05 MG N/A GO:0005524 ... N/A 35387982
    159125 7p7s:0 (3.0) BS06 MG N/A GO:0005524 ... N/A 35387982
    159126 7p7s:4 (3.0) BS02 ZN ? GO:0003735 ... A0A1B4XMM2 35387982
    159127 7p7s:5 (3.0) BS02 ZN ? GO:0003735 ... A0A1B4XR98 35387982
    159128 7p7s:8 (3.0) BS02 ZN ? GO:0003735 ... A0A1B4XKT9 35387982
    159129 7p7s:Q (3.0) BS02 MG ? GO:0003735 ... A0A1B4XKX1 35387982
    159130 7p7s:n (3.0) BS02 MG ? GO:0000049 ... A0A1B4XKT7 35387982
    159131 7p7s:o (3.0) BS02 ZN ? GO:0003735 ... A0A1B4XKT0 35387982
    159132 7p7t:0 (2.9) BS05 MG N/A GO:0005524 ... N/A 35387982
    159133 7p7t:0 (2.9) BS06 MG N/A GO:0005524 ... N/A 35387982
    159134 7p7t:4 (2.9) BS02 ZN ? GO:0003735 ... A0A1B4XMM2 35387982
    159135 7p7t:5 (2.9) BS02 ZN ? GO:0003735 ... A0A1B4XR98 35387982
    159136 7p7t:8 (2.9) BS02 ZN ? GO:0003735 ... A0A1B4XKT9 35387982
    159137 7p7t:n (2.9) BS02 MG ? GO:0000049 ... A0A1B4XKT7 35387982
    159138 7p7t:o (2.9) BS02 ZN ? GO:0003735 ... A0A1B4XKT0 35387982
    159139 7p7u:4 (3.1) BS02 ZN ? GO:0003735 ... A0A1B4XMM2 35387982
    159140 7p7u:5 (3.1) BS02 ZN ? GO:0003735 ... A0A1B4XR98 35387982
    159141 7p7u:8 (3.1) BS02 ZN ? GO:0003735 ... A0A1B4XKT9 35387982
    159142 7p7u:Q (3.1) BS02 MG ? GO:0003735 ... A0A1B4XKX1 35387982
    159143 7p7u:n (3.1) BS02 MG ? GO:0000049 ... A0A1B4XKT7 35387982
    159144 7p7u:o (3.1) BS02 ZN ? GO:0003735 ... A0A1B4XKT0 35387982
    159145 7p7w:AAA (1.57) BS02 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159146 7p7w:AAA (1.57) BS03 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159147 7p7w:BBB (1.57) BS02 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159148 7p85:A (1.47) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 36752589
    159149 7p85:A (1.47) BS03 ZN 3.1.8.1 GO:0004063 ... P0A434 36752589
    159150 7p8d:A (1.7) BS01 MG 2.7.13.3
    3.1.3.16
    GO:0000160 ... Q9C5U0 34630499
    159151 7p8d:B (1.7) BS01 MG 2.7.13.3
    3.1.3.16
    GO:0000160 ... Q9C5U0 34630499
    159152 7p8e:A (2.5) BS01 CA 2.7.13.3 GO:0000155 ... G7LCC3 34630499
    159153 7p8k:B (2.65) BS01 ZN ? GO:0003700 ... C4B7M5 34880132
    159154 7p8n:B (2.8) BS06 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159155 7p8n:b (2.8) BS04 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159156 7p8v:B (3.6) BS02 MG ? GO:0000018 ... P23367 35670670
    159157 7p91:B (2.8) BS06 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159158 7p91:b (2.8) BS04 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159159 7p92:B (2.7) BS06 ZN 1.12.1.4 GO:0005737 ... O52682 36018003
    159160 7p97:AAA (2.35) BS02 MG 2.7.7.106 GO:0005525 ... E5ASS2 35038903
    159161 7p97:AAA (2.35) BS03 MG 2.7.7.106 GO:0005525 ... E5ASS2 35038903
    159162 7p97:BBB (2.35) BS02 MG 2.7.7.106 GO:0005525 ... E5ASS2 35038903
    159163 7p97:BBB (2.35) BS03 MG 2.7.7.106 GO:0005525 ... E5ASS2 35038903
    159164 7p99:A (1.8) BS01 ZN 3.4.22.- GO:0030576 ... Q5W0Q7 35383180
    159165 7p9j:A (1.9) BS01 CO ? N/A H2J4R1 35508653
    159166 7p9j:A (1.9) BS02 CO ? N/A H2J4R1 35508653
    159167 7p9j:B (1.9) BS02 CO ? N/A H2J4R1 35508653
    159168 7p9j:B (1.9) BS03 CO ? N/A H2J4R1 35508653
    159169 7p9j:C (1.9) BS01 CO ? N/A H2J4R1 35508653
    159170 7p9j:C (1.9) BS02 CO ? N/A H2J4R1 35508653
    159171 7p9l:AAA (1.75) BS02 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159172 7p9l:AAA (1.75) BS03 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159173 7p9l:BBB (1.75) BS02 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159174 7p9l:BBB (1.75) BS03 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159175 7p9n:A (1.55) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159176 7p9n:A (1.55) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159177 7p9n:A (1.55) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159178 7p9p:AAA (2.11) BS01 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159179 7p9p:AAA (2.11) BS03 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159180 7p9p:BBB (2.11) BS02 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159181 7p9p:BBB (2.11) BS03 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159182 7p9q:A (2.53) BS01 MN N/A GO:0016831 ... N/A 35218772
    159183 7p9q:B (2.53) BS01 MN N/A GO:0016831 ... N/A 35218772
    159184 7p9q:C (2.53) BS01 MN N/A GO:0016831 ... N/A 35218772
    159185 7p9q:D (2.53) BS01 MN N/A GO:0016831 ... N/A 35218772
    159186 7p9q:E (2.53) BS01 MN N/A GO:0016831 ... N/A 35218772
    159187 7p9q:F (2.53) BS01 MN N/A GO:0016831 ... N/A 35218772
    159188 7p9r:A (1.41) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159189 7p9r:A (1.41) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159190 7p9r:A (1.41) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159191 7p9t:A (1.79) BS01 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159192 7p9t:A (1.79) BS02 ZN 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159193 7p9t:A (1.79) BS03 CA 3.1.3.35
    3.1.3.5
    3.1.3.89
    3.1.3.91
    3.1.3.99
    GO:0000166 ... P21589 34403084
    159194 7p9w:A (2.0001) BS04 MG ? GO:0042981 ... P03182 36298777
    159195 7p9w:A (2.0001) BS05 MG ? GO:0042981 ... P03182 36298777
    159196 7p9w:A (2.0001) BS06 MG ? GO:0042981 ... P03182 36298777
    159197 7p9y:AAA (1.94) BS01 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159198 7p9y:AAA (1.94) BS02 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159199 7p9y:BBB (1.94) BS01 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    159200 7p9y:BBB (1.94) BS02 ZN 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218