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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157801 7o6c:A (1.2) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157802 7o6c:A (1.2) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157803 7o6c:A (1.2) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157804 7o6c:A (1.2) BS05 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157805 7o6d:A (1.47) BS01 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157806 7o6d:A (1.47) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157807 7o6d:A (1.47) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157808 7o6d:A (1.47) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157809 7o6d:A (1.47) BS05 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157810 7o6x:AAA (2.2) BS02 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 34878777
    157811 7o6x:BBB (2.2) BS02 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 34878777
    157812 7o6y:M (3.4) BS01 ZN ? GO:0005739 ... Q6C8J9 34767441
    157813 7o6z:A (2.3) BS01 ND 1.1.2.7 GO:0005509 ... A0A7R8L7W4 34544276
    157814 7o6z:B (2.3) BS02 ND 1.1.2.7 GO:0005509 ... A0A7R8L7W4 34544276
    157815 7o71:M (2.4) BS01 ZN ? GO:0005739 ... Q6C8J9 34767441
    157816 7o72:3 (3.4) BS01 ZN ? GO:0000993 ... Q03290 34133942
    157817 7o72:3 (3.4) BS02 ZN ? GO:0000993 ... Q03290 34133942
    157818 7o72:4 (3.4) BS01 ZN ? GO:0000112 ... Q12004 34133942
    157819 7o72:6 (3.4) BS01 ZN ? GO:0000112 ... Q04673 34133942
    157820 7o72:6 (3.4) BS02 ZN ? GO:0000112 ... Q04673 34133942
    157821 7o72:6 (3.4) BS03 ZN ? GO:0000112 ... Q04673 34133942
    157822 7o72:6 (3.4) BS04 ZN ? GO:0000112 ... Q04673 34133942
    157823 7o72:A (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157824 7o72:A (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157825 7o72:A (3.4) BS03 MG 2.7.7.6 GO:0000428 ... P04050 34133942
    157826 7o72:B (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 34133942
    157827 7o72:C (3.4) BS01 ZN ? GO:0000428 ... P16370 34133942
    157828 7o72:I (3.4) BS01 ZN ? GO:0000428 ... P27999 34133942
    157829 7o72:I (3.4) BS02 ZN ? GO:0000428 ... P27999 34133942
    157830 7o72:J (3.4) BS01 ZN ? GO:0000428 ... P22139 34133942
    157831 7o72:L (3.4) BS01 ZN ? GO:0000428 ... P40422 34133942
    157832 7o72:M (3.4) BS02 ZN ? GO:0000993 ... P29055 34133942
    157833 7o72:W (3.4) BS01 ZN ? GO:0000993 ... P36100 34133942
    157834 7o73:3 (3.4) BS01 ZN ? GO:0000993 ... Q03290 34133942
    157835 7o73:3 (3.4) BS02 ZN ? GO:0000993 ... Q03290 34133942
    157836 7o73:4 (3.4) BS01 ZN ? GO:0000112 ... Q12004 34133942
    157837 7o73:6 (3.4) BS01 ZN ? GO:0000112 ... Q04673 34133942
    157838 7o73:6 (3.4) BS02 ZN ? GO:0000112 ... Q04673 34133942
    157839 7o73:6 (3.4) BS03 ZN ? GO:0000112 ... Q04673 34133942
    157840 7o73:6 (3.4) BS04 ZN ? GO:0000112 ... Q04673 34133942
    157841 7o73:A (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157842 7o73:A (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157843 7o73:A (3.4) BS04 MG 2.7.7.6 GO:0000428 ... P04050 34133942
    157844 7o73:B (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 34133942
    157845 7o73:C (3.4) BS01 ZN ? GO:0000428 ... P16370 34133942
    157846 7o73:I (3.4) BS01 ZN ? GO:0000428 ... P27999 34133942
    157847 7o73:I (3.4) BS02 ZN ? GO:0000428 ... P27999 34133942
    157848 7o73:J (3.4) BS01 ZN ? GO:0000428 ... P22139 34133942
    157849 7o73:L (3.4) BS01 ZN ? GO:0000428 ... P40422 34133942
    157850 7o73:M (3.4) BS03 ZN ? GO:0000993 ... P29055 34133942
    157851 7o73:W (3.4) BS03 ZN ? GO:0000993 ... P36100 34133942
    157852 7o75:3 (3.2) BS01 ZN ? GO:0000993 ... Q03290 34133942
    157853 7o75:3 (3.2) BS02 ZN ? GO:0000993 ... Q03290 34133942
    157854 7o75:4 (3.2) BS01 ZN ? GO:0000112 ... Q12004 34133942
    157855 7o75:6 (3.2) BS01 ZN ? GO:0000112 ... Q04673 34133942
    157856 7o75:6 (3.2) BS02 ZN ? GO:0000112 ... Q04673 34133942
    157857 7o75:6 (3.2) BS03 ZN ? GO:0000112 ... Q04673 34133942
    157858 7o75:6 (3.2) BS04 ZN ? GO:0000112 ... Q04673 34133942
    157859 7o75:A (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157860 7o75:A (3.2) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157861 7o75:A (3.2) BS05 MG 2.7.7.6 GO:0000428 ... P04050 34133942
    157862 7o75:B (3.2) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 34133942
    157863 7o75:C (3.2) BS01 ZN ? GO:0000428 ... P16370 34133942
    157864 7o75:I (3.2) BS01 ZN ? GO:0000428 ... P27999 34133942
    157865 7o75:I (3.2) BS02 ZN ? GO:0000428 ... P27999 34133942
    157866 7o75:J (3.2) BS01 ZN ? GO:0000428 ... P22139 34133942
    157867 7o75:L (3.2) BS01 ZN ? GO:0000428 ... P40422 34133942
    157868 7o75:M (3.2) BS02 ZN ? GO:0000993 ... P29055 34133942
    157869 7o75:W (3.2) BS01 ZN ? GO:0000993 ... P36100 34133942
    157870 7o7g:A (1.6) BS11 CA ? N/A Q8EG34 34556577
    157871 7o7g:A (1.6) BS12 CA ? N/A Q8EG34 34556577
    157872 7o7g:A (1.6) BS13 CA ? N/A Q8EG34 34556577
    157873 7o7g:A (1.6) BS14 CA ? N/A Q8EG34 34556577
    157874 7o7y:AC (2.2) BS02 ZN ? GO:0003723 ... G1SK22 34029205
    157875 7o7y:AE (2.2) BS02 ZN N/A GO:0003735 ... N/A 34029205
    157876 7o7y:AG (2.2) BS02 ZN ? GO:0003735 ... G1U7M4 34029205
    157877 7o7y:Bg (2.2) BS02 ZN ? GO:0003735 ... G1TXG5 34029205
    157878 7o7y:Bj (2.2) BS03 ZN ? GO:0003723 ... U3KPD5 34029205
    157879 7o7y:Bm (2.2) BS02 ZN N/A GO:0003735 ... N/A 34029205
    157880 7o7y:Bo (2.2) BS03 ZN ? GO:0003735 ... G1T040 34029205
    157881 7o7y:Bp (2.2) BS02 ZN ? GO:0003735 ... G1SY53 34029205
    157882 7o7z:AC (2.4) BS02 ZN ? GO:0003723 ... G1SK22 34029205
    157883 7o7z:AE (2.4) BS03 ZN N/A GO:0003735 ... N/A 34029205
    157884 7o7z:AG (2.4) BS02 ZN ? GO:0003735 ... G1U7M4 34029205
    157885 7o7z:Bg (2.4) BS02 ZN ? GO:0003735 ... G1TXG5 34029205
    157886 7o7z:Bj (2.4) BS03 ZN ? GO:0003723 ... U3KPD5 34029205
    157887 7o7z:Bm (2.4) BS02 ZN N/A GO:0003735 ... N/A 34029205
    157888 7o7z:Bo (2.4) BS04 ZN ? GO:0003735 ... G1T040 34029205
    157889 7o7z:Bp (2.4) BS02 ZN ? GO:0003735 ... G1SY53 34029205
    157890 7o80:AC (2.9) BS02 ZN ? GO:0003723 ... G1SK22 34029205
    157891 7o80:AE (2.9) BS03 ZN N/A GO:0003735 ... N/A 34029205
    157892 7o80:AG (2.9) BS02 ZN ? GO:0003735 ... G1U7M4 34029205
    157893 7o80:Bg (2.9) BS02 ZN ? GO:0003735 ... G1TXG5 34029205
    157894 7o80:Bj (2.9) BS03 ZN ? GO:0003723 ... U3KPD5 34029205
    157895 7o80:Bm (2.9) BS02 ZN N/A GO:0003735 ... N/A 34029205
    157896 7o80:Bo (2.9) BS04 ZN ? GO:0003735 ... G1T040 34029205
    157897 7o80:Bp (2.9) BS02 ZN ? GO:0003735 ... G1SY53 34029205
    157898 7o81:AC (3.1) BS02 ZN ? GO:0003723 ... G1SK22 34029205
    157899 7o81:AE (3.1) BS02 ZN N/A GO:0003735 ... N/A 34029205
    157900 7o81:AG (3.1) BS02 ZN ? GO:0003735 ... G1U7M4 34029205
    157901 7o81:Bg (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 34029205
    157902 7o81:Bj (3.1) BS03 ZN ? GO:0003723 ... U3KPD5 34029205
    157903 7o81:Bm (3.1) BS02 ZN N/A GO:0003735 ... N/A 34029205
    157904 7o81:Bo (3.1) BS03 ZN ? GO:0003735 ... G1T040 34029205
    157905 7o81:Bp (3.1) BS02 ZN ? GO:0003735 ... G1SY53 34029205
    157906 7o85:A (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    157907 7o85:A (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    157908 7o85:D (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    157909 7o85:D (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    157910 7o85:G (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    157911 7o85:G (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    157912 7o85:J (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    157913 7o85:J (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    157914 7o85:M (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    157915 7o85:M (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    157916 7o85:P (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    157917 7o85:P (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    157918 7o85:S (3.3) BS01 CA ? GO:0005576 ... P13423 34473089
    157919 7o85:S (3.3) BS02 CA ? GO:0005576 ... P13423 34473089
    157920 7o87:AAA (1.5) BS02 MG N/A GO:0003824 ... N/A 36214476
    157921 7o87:BBB (1.5) BS02 MG N/A GO:0003824 ... N/A 36214476
    157922 7o8a:A (1.21) BS01 FE ? GO:0016491 ... F9VPE5 34757735
    157923 7o8a:A (1.21) BS02 FE ? GO:0016491 ... F9VPE5 34757735
    157924 7o8a:B (1.21) BS01 FE ? GO:0016491 ... F9VPE5 34757735
    157925 7o8a:B (1.21) BS02 FE ? GO:0016491 ... F9VPE5 34757735
    157926 7o8a:C (1.21) BS01 FE ? GO:0016491 ... F9VPE5 34757735
    157927 7o8a:C (1.21) BS02 FE ? GO:0016491 ... F9VPE5 34757735
    157928 7o8d:A (1.12) BS01 FE ? GO:0016491 ... F9VPE5 34757735
    157929 7o8d:A (1.12) BS02 FE ? GO:0016491 ... F9VPE5 34757735
    157930 7o8d:B (1.12) BS01 FE ? GO:0016491 ... F9VPE5 34757735
    157931 7o8d:B (1.12) BS02 FE ? GO:0016491 ... F9VPE5 34757735
    157932 7o90:A (1.49) BS01 FE ? GO:0016491 ... F9VPE5 34757735
    157933 7o90:B (1.49) BS01 FE ? GO:0016491 ... F9VPE5 34757735
    157934 7o91:A (1.1) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    157935 7o91:A (1.1) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    157936 7o91:B (1.1) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    157937 7o91:B (1.1) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    157938 7o91:C (1.1) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    157939 7o91:C (1.1) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    157940 7o93:A (1.17) BS01 MN ? GO:0016491 ... F9VPE5 34757735
    157941 7o93:A (1.17) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    157942 7o93:B (1.17) BS02 MN ? GO:0016491 ... F9VPE5 34757735
    157943 7o93:B (1.17) BS03 MN ? GO:0016491 ... F9VPE5 34757735
    157944 7o99:A (1.24) BS01 CO ? GO:0016491 ... F9VPE5 34757735
    157945 7o99:A (1.24) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    157946 7o99:B (1.24) BS01 CO ? GO:0016491 ... F9VPE5 34757735
    157947 7o99:B (1.24) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    157948 7o99:B (1.24) BS03 CO ? GO:0016491 ... F9VPE5 34757735
    157949 7o9d:A (1.28) BS01 CO ? GO:0016491 ... F9VPE5 34757735
    157950 7o9d:A (1.28) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    157951 7o9d:B (1.28) BS02 CO ? GO:0016491 ... F9VPE5 34757735
    157952 7o9d:B (1.28) BS03 CO ? GO:0016491 ... F9VPE5 34757735
    157953 7o9d:B (1.28) BS04 CO ? GO:0016491 ... F9VPE5 34757735
    157954 7o9f:C (2.51) BS03 MG 3.6.5.4 GO:0003924 ... P37105 35217658
    157955 7o9k:0 (3.1) BS02 ZN ? GO:0003723 ... Q9BYC8 34135318
    157956 7o9k:4 (3.1) BS02 ZN ? GO:0003735 ... Q9P0J6 34135318
    157957 7o9k:G (3.1) BS03 MG ? GO:0000287 ... Q9H4K7 34135318
    157958 7o9k:W (3.1) BS02 MG ? GO:0003723 ... Q9P0M9 34135318
    157959 7o9k:t (3.1) BS03 MG ? GO:0003723 ... P49411 34135318
    157960 7o9m:0 (2.6) BS02 ZN ? GO:0003723 ... Q9BYC8 34135318
    157961 7o9m:4 (2.6) BS02 ZN ? GO:0003735 ... Q9P0J6 34135318
    157962 7o9m:F (2.6) BS02 MG ? GO:0003723 ... Q9BYD3 34135318
    157963 7o9m:n (2.6) BS02 MG 2.1.1.- GO:0000451 ... Q9UI43 34135318
    157964 7o9r:AAA (1.85) BS01 MG N/A GO:0003824 ... N/A 36214476
    157965 7o9r:BBB (1.85) BS01 MG N/A GO:0003824 ... N/A 36214476
    157966 7oa1:AAA (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157967 7oa1:BBB (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157968 7oa4:AAA (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157969 7oa4:AAA (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157970 7oa4:BBB (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157971 7oa4:BBB (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157972 7oa4:DDD (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157973 7oa4:DDD (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157974 7oa4:GGG (2.9) BS02 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157975 7oa4:GGG (2.9) BS03 MN 2.7.7.48
    3.1.-.-
    N/A A5HC98 38656310
    157976 7oa7:A (1.45) BS01 CA ? N/A A0A0B7GRV8 36626560
    157977 7oar:B (2.58) BS03 MG ? GO:0000723 ... K7RJ88 35736675
    157978 7ob0:A (1.9) BS01 CA ? GO:0000166 ... M1E1F8 34146595
    157979 7ob0:B (1.9) BS01 MG ? GO:0000166 ... M1E1F8 34146595
    157980 7ob0:B (1.9) BS02 CA ? GO:0000166 ... M1E1F8 34146595
    157981 7ob0:C (1.9) BS01 MG ? GO:0000166 ... M1E1F8 34146595
    157982 7ob5:A (1.8) BS02 CA ? GO:0000122 ... P31947 37130519
    157983 7ob6:A (2.598) BS01 ZN N/A N/A N/A 35405098
    157984 7ob6:A (2.598) BS02 ZN N/A N/A N/A 35405098
    157985 7ob8:A (1.8) BS03 MG ? GO:0000122 ... P31947 37130519
    157986 7ob9:A (2.7) BS04 ZN 2.7.7.6 GO:0000287 ... O95602 34887565
    157987 7ob9:A (2.7) BS05 ZN 2.7.7.6 GO:0000287 ... O95602 34887565
    157988 7ob9:A (2.7) BS06 MG 2.7.7.6 GO:0000287 ... O95602 34887565
    157989 7ob9:B (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... Q9H9Y6 34887565
    157990 7ob9:I (2.7) BS01 ZN ? GO:0000428 ... Q9P1U0 34887565
    157991 7ob9:J (2.7) BS01 ZN ? GO:0000428 ... P62875 34887565
    157992 7ob9:L (2.7) BS01 ZN ? GO:0000428 ... P53803 34887565
    157993 7oba:A (3.1) BS01 ZN 2.7.7.6 GO:0000287 ... O95602 34887565
    157994 7oba:A (3.1) BS02 ZN 2.7.7.6 GO:0000287 ... O95602 34887565
    157995 7oba:B (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... Q9H9Y6 34887565
    157996 7oba:I (3.1) BS01 ZN ? GO:0000428 ... Q9P1U0 34887565
    157997 7oba:I (3.1) BS02 ZN ? GO:0000428 ... Q9P1U0 34887565
    157998 7oba:J (3.1) BS01 ZN ? GO:0000428 ... P62875 34887565
    157999 7oba:L (3.1) BS01 ZN ? GO:0000428 ... P53803 34887565
    158000 7obb:A (3.3) BS03 ZN 2.7.7.6 GO:0000287 ... O95602 34887565

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218