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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    157601 7o1b:B (3.08) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157602 7o1c:AB (2.6) BS02 ZN ? GO:0000028 ... P0A7V0 34504068
    157603 7o1c:B4 (2.6) BS02 ZN ? GO:0002181 ... P0A7Q6 34504068
    157604 7o1c:BI (2.6) BS03 ZN ? GO:0002181 ... P0A7M9 34504068
    157605 7o1c:BL (2.6) BS02 MG ? GO:0002181 ... P02413 34504068
    157606 7o1r:A (1.3) BS01 MG 1.11.2.1 GO:0004601 ... A0A1Y2TH07 34540338
    157607 7o1u:A (1.7) BS02 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157608 7o1u:A (1.7) BS03 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157609 7o1u:A (1.7) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157610 7o1u:A (1.7) BS05 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    157611 7o1u:A (1.7) BS06 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    157612 7o1w:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157613 7o1w:A (1.8) BS05 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157614 7o1w:A (1.8) BS06 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157615 7o1w:A (1.8) BS07 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    157616 7o1x:A (1.6) BS01 MG 1.11.2.1 GO:0004601 ... A0A1Y2TH07 34540338
    157617 7o1y:A (1.7) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157618 7o1y:A (1.7) BS05 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157619 7o1y:A (1.7) BS06 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157620 7o1y:A (1.7) BS07 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    157621 7o1z:A (1.8) BS03 MG 1.11.2.1 GO:0004601 ... A0A1Y2TH07 34540338
    157622 7o20:A (1.8) BS04 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157623 7o20:A (1.8) BS05 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157624 7o20:A (1.8) BS06 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157625 7o20:A (1.8) BS07 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    157626 7o22:A (1.8) BS01 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157627 7o22:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157628 7o22:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 34415722
    157629 7o22:A (1.8) BS04 NA 3.4.21.75 GO:0004252 ... P09958 34415722
    157630 7o2a:A (1.57) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157631 7o2a:A (1.57) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157632 7o2a:A (1.57) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157633 7o2b:A (2.03) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157634 7o2b:A (2.03) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157635 7o2b:A (2.03) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157636 7o2c:A (1.52) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157637 7o2c:A (1.52) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157638 7o2c:A (1.52) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 34154424
    157639 7o2d:A (2.68) BS02 MG 1.11.2.1 GO:0004601 ... A0A1Y2TH07 34540338
    157640 7o2g:A (2.1) BS03 MG 1.11.2.1 GO:0004601 ... A0A1Y2TH07 34540338
    157641 7o2l:G (3.0) BS01 MG ? GO:0000502 ... P21243 35469007
    157642 7o2l:K (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 35469007
    157643 7o2l:V (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P25043 35469007
    157644 7o2l:W (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P25451 35469007
    157645 7o2l:Y (3.0) BS02 MG 3.4.25.1 GO:0004298 ... P30656 35469007
    157646 7o2l:Z (3.0) BS01 MG 3.4.25.1 GO:0000502 ... P23724 35469007
    157647 7o2p:A (1.9) BS02 ZN ? N/A F8W4B7 34795871
    157648 7o2p:B (1.9) BS03 ZN ? N/A F8W4B7 34795871
    157649 7o2r:A (2.3) BS02 ZN ? N/A F8W4B7 34795871
    157650 7o2s:A (2.28) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157651 7o2s:A (2.28) BS02 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157652 7o2s:A (2.28) BS03 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157653 7o37:a (3.2) BS01 CU 7.1.1.9 GO:0001666 ... P00397 34616041
    157654 7o37:f (3.2) BS01 ZN ? GO:0005740 ... P19536 34616041
    157655 7o3c:a (3.3) BS01 CU 7.1.1.9 GO:0001666 ... P00397 34616041
    157656 7o3c:f (3.3) BS01 ZN ? GO:0005740 ... P19536 34616041
    157657 7o3e:a (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00397 34616041
    157658 7o3e:b (3.6) BS02 MG 7.1.1.9 GO:0001666 ... P00405 34616041
    157659 7o3e:f (3.6) BS01 ZN ? GO:0005740 ... P19536 34616041
    157660 7o3s:A (2.0) BS03 MG ? GO:0000122 ... P31947 34076416
    157661 7o3u:A (1.8) BS02 CA ? GO:0005509 ... Q27709 34802167
    157662 7o45:A (2.1) BS01 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157663 7o45:A (2.1) BS02 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157664 7o45:A (2.1) BS03 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157665 7o45:B (2.1) BS01 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157666 7o45:B (2.1) BS02 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157667 7o45:B (2.1) BS03 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157668 7o45:C (2.1) BS01 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157669 7o45:C (2.1) BS02 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157670 7o45:C (2.1) BS03 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157671 7o45:D (2.1) BS01 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157672 7o45:D (2.1) BS02 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157673 7o45:D (2.1) BS03 ZN 2.1.1.37 N/A Q9UBC3 35760008
    157674 7o48:A (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157675 7o48:B (2.0) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 34232641
    157676 7o4d:A (2.249) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 37561584
    157677 7o4d:B (2.249) BS02 ZN 1.10.5.1 GO:0001512 ... P16083 37561584
    157678 7o4e:A (2.5) BS01 ZN ? GO:0008270 ... Q9M1V3 34712911
    157679 7o4e:A (2.5) BS02 ZN ? GO:0008270 ... Q9M1V3 34712911
    157680 7o4e:B (2.5) BS01 ZN ? GO:0008270 ... Q9M1V3 34712911
    157681 7o4e:B (2.5) BS02 ZN ? GO:0008270 ... Q9M1V3 34712911
    157682 7o4f:A (1.65) BS01 ZN ? GO:0008270 ... Q9M1V3 34712911
    157683 7o4f:A (1.65) BS02 ZN ? GO:0008270 ... Q9M1V3 34712911
    157684 7o4f:B (1.65) BS01 ZN ? GO:0008270 ... Q9M1V3 34712911
    157685 7o4f:B (1.65) BS02 ZN ? GO:0008270 ... Q9M1V3 34712911
    157686 7o4f:D (1.65) BS01 ZN ? GO:0008270 ... Q9M1V3 34712911
    157687 7o4f:D (1.65) BS02 ZN ? GO:0008270 ... Q9M1V3 34712911
    157688 7o4f:G (1.65) BS01 ZN ? GO:0008270 ... Q9M1V3 34712911
    157689 7o4f:G (1.65) BS02 ZN ? GO:0008270 ... Q9M1V3 34712911
    157690 7o4g:A (2.66) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157691 7o4g:A (2.66) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157692 7o4g:B (2.66) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157693 7o4g:B (2.66) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157694 7o4i:3 (3.2) BS01 ZN ? GO:0000993 ... Q03290 34133942
    157695 7o4i:3 (3.2) BS02 ZN ? GO:0000993 ... Q03290 34133942
    157696 7o4i:4 (3.2) BS01 ZN ? GO:0000112 ... Q12004 34133942
    157697 7o4i:6 (3.2) BS01 ZN ? GO:0000112 ... Q04673 34133942
    157698 7o4i:6 (3.2) BS02 ZN ? GO:0000112 ... Q04673 34133942
    157699 7o4i:6 (3.2) BS03 ZN ? GO:0000112 ... Q04673 34133942
    157700 7o4i:6 (3.2) BS04 ZN ? GO:0000112 ... Q04673 34133942
    157701 7o4i:A (3.2) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157702 7o4i:A (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157703 7o4i:A (3.2) BS04 MG 2.7.7.6 GO:0000428 ... P04050 34133942
    157704 7o4i:B (3.2) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 34133942
    157705 7o4i:C (3.2) BS01 ZN ? GO:0000428 ... P16370 34133942
    157706 7o4i:I (3.2) BS01 ZN ? GO:0000428 ... P27999 34133942
    157707 7o4i:I (3.2) BS02 ZN ? GO:0000428 ... P27999 34133942
    157708 7o4i:J (3.2) BS01 ZN ? GO:0000428 ... P22139 34133942
    157709 7o4i:L (3.2) BS01 ZN ? GO:0000428 ... P40422 34133942
    157710 7o4i:M (3.2) BS02 ZN ? GO:0000993 ... P29055 34133942
    157711 7o4i:W (3.2) BS02 ZN ? GO:0000993 ... P36100 34133942
    157712 7o4j:3 (2.9) BS01 ZN ? GO:0000993 ... Q03290 34133942
    157713 7o4j:3 (2.9) BS02 ZN ? GO:0000993 ... Q03290 34133942
    157714 7o4j:4 (2.9) BS01 ZN ? GO:0000112 ... Q12004 34133942
    157715 7o4j:6 (2.9) BS01 ZN ? GO:0000112 ... Q04673 34133942
    157716 7o4j:6 (2.9) BS02 ZN ? GO:0000112 ... Q04673 34133942
    157717 7o4j:6 (2.9) BS03 ZN ? GO:0000112 ... Q04673 34133942
    157718 7o4j:6 (2.9) BS04 ZN ? GO:0000112 ... Q04673 34133942
    157719 7o4j:A (2.9) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157720 7o4j:A (2.9) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157721 7o4j:A (2.9) BS03 MG 2.7.7.6 GO:0000428 ... P04050 34133942
    157722 7o4j:B (2.9) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 34133942
    157723 7o4j:C (2.9) BS01 ZN ? GO:0000428 ... P16370 34133942
    157724 7o4j:I (2.9) BS01 ZN ? GO:0000428 ... P27999 34133942
    157725 7o4j:I (2.9) BS02 ZN ? GO:0000428 ... P27999 34133942
    157726 7o4j:J (2.9) BS01 ZN ? GO:0000428 ... P22139 34133942
    157727 7o4j:L (2.9) BS01 ZN ? GO:0000428 ... P40422 34133942
    157728 7o4j:M (2.9) BS02 ZN ? GO:0000993 ... P29055 34133942
    157729 7o4j:W (2.9) BS03 ZN ? GO:0000993 ... P36100 34133942
    157730 7o4k:3 (3.6) BS01 ZN ? GO:0000993 ... Q03290 34133942
    157731 7o4k:3 (3.6) BS02 ZN ? GO:0000993 ... Q03290 34133942
    157732 7o4k:4 (3.6) BS01 ZN ? GO:0000112 ... Q12004 34133942
    157733 7o4k:6 (3.6) BS01 ZN ? GO:0000112 ... Q04673 34133942
    157734 7o4k:6 (3.6) BS02 ZN ? GO:0000112 ... Q04673 34133942
    157735 7o4k:6 (3.6) BS03 ZN ? GO:0000112 ... Q04673 34133942
    157736 7o4k:6 (3.6) BS04 ZN ? GO:0000112 ... Q04673 34133942
    157737 7o4k:A (3.6) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157738 7o4k:B (3.6) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 34133942
    157739 7o4k:W (3.6) BS01 ZN ? GO:0000993 ... P36100 34133942
    157740 7o4l:3 (3.4) BS01 ZN ? GO:0000993 ... Q03290 34133942
    157741 7o4l:3 (3.4) BS02 ZN ? GO:0000993 ... Q03290 34133942
    157742 7o4l:4 (3.4) BS01 ZN ? GO:0000112 ... Q12004 34133942
    157743 7o4l:6 (3.4) BS01 ZN ? GO:0000112 ... Q04673 34133942
    157744 7o4l:6 (3.4) BS02 ZN ? GO:0000112 ... Q04673 34133942
    157745 7o4l:6 (3.4) BS03 ZN ? GO:0000112 ... Q04673 34133942
    157746 7o4l:6 (3.4) BS04 ZN ? GO:0000112 ... Q04673 34133942
    157747 7o4l:A (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157748 7o4l:A (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 34133942
    157749 7o4l:B (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 34133942
    157750 7o4l:W (3.4) BS01 ZN ? GO:0000993 ... P36100 34133942
    157751 7o58:A (1.97) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157752 7o58:A (1.97) BS03 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157753 7o58:B (1.97) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157754 7o58:B (1.97) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157755 7o5h:K (3.1) BS02 MG ? GO:0002181 ... P0A7R9 34086932
    157756 7o5l:A (1.74) BS02 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    157757 7o5l:A (1.74) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    157758 7o5l:A (1.74) BS04 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    157759 7o5l:C (1.74) BS02 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    157760 7o5l:C (1.74) BS03 RB 3.13.2.1 GO:0004013 ... P74008 35775986
    157761 7o5r:A (1.65) BS01 MN N/A GO:0003824 ... N/A 36214476
    157762 7o5r:A (1.65) BS02 MN N/A GO:0003824 ... N/A 36214476
    157763 7o5r:B (1.65) BS01 MN N/A GO:0003824 ... N/A 36214476
    157764 7o5v:AAA (1.95) BS01 MG N/A GO:0003824 ... N/A 36214476
    157765 7o5v:BBB (1.95) BS01 MG N/A GO:0003824 ... N/A 36214476
    157766 7o5w:AAA (1.2) BS01 MG N/A GO:0003824 ... N/A 36214476
    157767 7o5w:BBB (1.2) BS01 MG N/A GO:0003824 ... N/A 36214476
    157768 7o5z:A (2.07) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157769 7o5z:A (2.07) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157770 7o5z:B (2.07) BS01 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157771 7o5z:B (2.07) BS02 MG 5.4.2.8 GO:0004615 ... O15305 34859900
    157772 7o63:A (1.16) BS01 MG 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157773 7o63:A (1.16) BS02 MG 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157774 7o64:A (1.96) BS01 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157775 7o65:A (1.7) BS01 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157776 7o65:A (1.7) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157777 7o65:A (1.7) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157778 7o65:A (1.7) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157779 7o66:A (1.6) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157780 7o66:A (1.6) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157781 7o66:A (1.6) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157782 7o66:A (1.6) BS05 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157783 7o67:A (1.86) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157784 7o67:A (1.86) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157785 7o67:A (1.86) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157786 7o67:A (1.86) BS05 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157787 7o68:A (1.68) BS01 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157788 7o68:A (1.68) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157789 7o68:A (1.68) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157790 7o68:A (1.68) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157791 7o69:A (1.35) BS01 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157792 7o69:A (1.35) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157793 7o69:A (1.35) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157794 7o69:A (1.35) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157795 7o6a:A (1.4) BS01 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157796 7o6a:A (1.4) BS02 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157797 7o6a:A (1.4) BS03 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157798 7o6a:A (1.4) BS04 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157799 7o6a:A (1.4) BS05 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    157800 7o6c:A (1.2) BS01 FE2 1.16.3.1 GO:0006826 ... Q8N4E7 34343376
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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